>CTR1_HUMAN (P30825) High-affinity cationic amino acid transporter 1 (CAT-1)|
           (CAT1) (System Y+ basic amino acid transporter)
           (Ecotropic retroviral leukemia receptor homolog) (ERR)
           (Ecotropic retrovirus receptor homolog)
          Length = 629

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
 Frame = +1

Query: 235 GETGGRMCGSAPSRSSHEGRSWFRPSGLGGCLSPGAPFLSEF--YKASSELGTVQQEPLA 408
           G T GR+C +  ++    G   F P G  G LS  A     F  +   +  G   + P  
Sbjct: 225 GNTSGRLCLNNDTKEGKPGVGGFMPFGFSGVLSGAATCFYAFVGFDCIATTGEEVKNPQK 284

Query: 409 CFPLGV 426
             P+G+
Sbjct: 285 AIPVGI 290

>PININ_MOUSE (O35691) Pinin|
          Length = 725

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -3

Query: 380 NSEEAL*NSDKKGAPGERHP-PSPEGRNHERPS*EDRDGAEPHILPPVSPREAVTSAALC 204
           NS+E    S++K    E+ P P PE     +P  +    ++PH  P   P+  + S  LC
Sbjct: 449 NSQEVEKESEEKEEKEEKEPEPQPEPVAQPQPPPQPLPQSQPHSQPHSQPQPVLQSQPLC 508

>MATK_TORCL (Q9MVV7) Maturase K (Intron maturase)|
          Length = 495

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -2

Query: 531 SWHALTEYKLCISLDRVFLLLVHFLSCSVNPA*VFYTQRKTSKWLLLNCAQ 379
           SW +LT+  +    DR+ + L H+ S S+N   ++Y +      LLL CA+
Sbjct: 390 SWTSLTDDDILDRFDRICINLFHYYSGSINKDGLYYIK----YILLLPCAK 436

>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor|
          Length = 1745

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 344  GAPGERHPPSPEGRNHER--PS*EDRDGAEPHILPP 243
            G  GER PP P G   E+  P  E R+GA+  + PP
Sbjct: 929  GPLGERGPPGPPGPPGEQGLPGLEGREGAKGELGPP 964

>CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor|
          Length = 1775

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
 Frame = -3

Query: 359  NSDKKGAPGERHPPSPEGRNHERPS*EDRDG--------AEPHILPPVSPR 231
            N    GAPGER    P+GR       + RDG         EP +LPP  P+
Sbjct: 1423 NDGPVGAPGERGFTGPKGR-------DGRDGTPGLPGQKGEPGMLPPPGPK 1466

>CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor|
          Length = 1355

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 350 KKGAPGERHPPSPEGRNHERPS*EDRDGAEPH 255
           ++GAPG+  PP   G   ER +  +  GA PH
Sbjct: 563 ERGAPGDFGPPGSAGTRGERGAPGESGGAGPH 594

>MATK_AMEAR (Q9MSR8) Maturase K (Intron maturase)|
          Length = 509

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -2

Query: 531 SWHALTEYKLCISLDRVFLLLVHFLSCSVNPA*VFYTQRKTSKWLLLNCAQ 379
           SW +L++  +    DR+   L H+ S S+NP  ++Y +      LLL CA+
Sbjct: 391 SWTSLSDDDILDRFDRICRNLFHYYSGSINPDGLYYIK----YILLLPCAK 437

>KAP3_BOVIN (P31322) cAMP-dependent protein kinase type II-beta regulatory|
           subunit
          Length = 417

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +1

Query: 271 SRSSHEGRSW--FRPSGLGGCLSPGAPFLSEFYKASSELGTVQQEPLA 408
           +R  HEGR+W     +G GG  S G  F  E   + SE G  ++E  A
Sbjct: 48  ARFGHEGRTWGDAGAAGGGGTPSKGVNFAEEPRHSDSENGEEEEEEAA 95

>HUT1_CRYNE (Q5K915) UDP-galactose transporter homolog 1|
          Length = 412

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 66  HRGPNFQTHKPADLKPGDAFAQPIVM 143
           H  P+ Q H P+D  PGD F  P+ +
Sbjct: 35  HPHPHQQPHSPSDPPPGDKFPSPLFL 60

>CI079_HUMAN (Q6ZUB1) Protein C9orf79|
          Length = 1445

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
 Frame = -3

Query: 437  LKCS---TPRGKQASGSC*TVPNSEEAL*NSDKKGAPGERHPPSPEGRNHERPS*EDRDG 267
            L CS   TP+G          P     + + D   AP  R P SP G +H RP      G
Sbjct: 1375 LACSPKATPKGHHC-------PVKNRGIRDRDSSWAPPPREPVSPAGPHHHRPRMASTSG 1427

Query: 266  AEPH 255
              PH
Sbjct: 1428 G-PH 1430


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,627,511
Number of Sequences: 219361
Number of extensions: 2044417
Number of successful extensions: 6445
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6435
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)