ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22d05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_463690.1| Oryza sativa (japonica cultivar-group), predic... 266 7e-68
2dbj|AK068569.1| Oryza sativa (japonica cultivar-group) cDNA clon... 266 7e-68
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 186 5e-44
4dbj|AP003412.4| Oryza sativa (japonica cultivar-group) genomic D... 186 5e-44
5gb|AC135914.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.48
6emb|AL359292.12| Human DNA sequence from clone RP3-448K1 on chro... 44 0.48
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.48
8emb|AL928704.10| Mouse DNA sequence from clone RP23-393G10 on ch... 42 1.9
9gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 42 1.9
10dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 42 1.9
11ref|XM_323660.1| Neurospora crassa OR74A predicted protein (NCU0... 40 7.5
12ref|XM_955874.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.5
13emb|BX927107.9| Zebrafish DNA sequence from clone CH211-281H20 i... 40 7.5
14ref|XM_810831.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 7.5
15ref|XM_810833.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 7.5
16ref|XM_797493.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 7.5
17gb|AC158532.2| Mus musculus BAC clone RP23-178C22 from chromosom... 40 7.5
18emb|AL627407.10| Human DNA sequence from clone RP11-496J2 on chr... 40 7.5
19emb|AL356772.14| Human DNA sequence from clone RP11-47B24 on chr... 40 7.5
20emb|BX294026.1|NCB7H23 Neurospora crassa DNA linkage group V BAC... 40 7.5
21gb|AC113190.8| Homo sapiens chromosome 15, clone RP11-186H10, co... 40 7.5
22gb|AC112706.2| Homo sapiens chromosome 19 clone CTD-3195E18, com... 40 7.5
23gb|AC092074.3| Homo sapiens chromosome 19 clone X200282, complet... 40 7.5
24emb|AL808027.14| Mouse DNA sequence from clone RP23-161B9 on chr... 40 7.5
25gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 40 7.5
26emb|BX324225.7| Zebrafish DNA sequence from clone DKEY-180I22 in... 40 7.5
27emb|BX323808.7| Zebrafish DNA sequence from clone DKEY-117N4, co... 40 7.5
28gb|AC139063.11| Mus musculus chromosome 7, clone RP23-73F23, com... 40 7.5
29gb|AC074313.29| Mus musculus strain C57BL/6J clone rp23-412j23 m... 40 7.5
30gb|AC005319.1|AC005319 Human Chromosome 15q26.1 PAC clone pDJ430... 40 7.5
31gb|AC005379.1|AC005379 Homo sapiens chromosome 19, cosmid R32603... 40 7.5
32emb|AL845447.3| Mouse DNA sequence from clone RP23-133L20 on chr... 40 7.5 
>ref|XM_463690.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1371

 Score =  266 bits (134), Expect = 7e-68
 Identities = 224/254 (88%)
 Strand = Plus / Minus

                                                                        
Query: 234  aggagagacgggcggtagaatgtgtggctctgcgccatctcgatcctctcacgagggtcg 293
            |||||||| |||||||||||||  ||||| ||||||||||| ||||| |||||||| || 
Sbjct: 1358 aggagagatgggcggtagaatgcatggctttgcgccatctcaatcctttcacgaggatca 1299

                                                                        
Query: 294  ttcatggtttcgtccctcagggcttggaggatgtctctcaccgggagctccctttttatc 353
            ||||||||||| || ||||||||||| || || |||||   || ||||||||||||||| 
Sbjct: 1298 ttcatggtttcatctctcagggcttgcagaatatctcttgtcgagagctccctttttatt 1239

                                                                        
Query: 354  agaattctataaagcctcttcagaattgggcacagttcagcaggagccacttgcttgttt 413
            || |||||||| ||||||||||  || ||||||||||||||||| || |||||||| |||
Sbjct: 1238 agtattctatagagcctcttcaagatcgggcacagttcagcaggtgcaacttgcttattt 1179

                                                                        
Query: 414  tcctctgggtgtagaacacttaagctgggttgactgagcagctcaaaaaatgcaccaaca 473
            |||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1178 tcctctgggtgttgcacacttaagctgggttgactgagaagctcaaaaaatgcaccaaca 1119

                          
Query: 474  gcagaaataccctg 487
            ||||| ||||||||
Sbjct: 1118 gcagagataccctg 1105
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>dbj|AK068569.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154E21, full
            insert sequence
          Length = 2080

 Score =  266 bits (134), Expect = 7e-68
 Identities = 224/254 (88%)
 Strand = Plus / Minus

                                                                        
Query: 234  aggagagacgggcggtagaatgtgtggctctgcgccatctcgatcctctcacgagggtcg 293
            |||||||| |||||||||||||  ||||| ||||||||||| ||||| |||||||| || 
Sbjct: 1841 aggagagatgggcggtagaatgcatggctttgcgccatctcaatcctttcacgaggatca 1782

                                                                        
Query: 294  ttcatggtttcgtccctcagggcttggaggatgtctctcaccgggagctccctttttatc 353
            ||||||||||| || ||||||||||| || || |||||   || ||||||||||||||| 
Sbjct: 1781 ttcatggtttcatctctcagggcttgcagaatatctcttgtcgagagctccctttttatt 1722

                                                                        
Query: 354  agaattctataaagcctcttcagaattgggcacagttcagcaggagccacttgcttgttt 413
            || |||||||| ||||||||||  || ||||||||||||||||| || |||||||| |||
Sbjct: 1721 agtattctatagagcctcttcaagatcgggcacagttcagcaggtgcaacttgcttattt 1662

                                                                        
Query: 414  tcctctgggtgtagaacacttaagctgggttgactgagcagctcaaaaaatgcaccaaca 473
            |||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1661 tcctctgggtgttgcacacttaagctgggttgactgagaagctcaaaaaatgcaccaaca 1602

                          
Query: 474  gcagaaataccctg 487
            ||||| ||||||||
Sbjct: 1601 gcagagataccctg 1588
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  186 bits (94), Expect = 5e-44
 Identities = 139/154 (90%)
 Strand = Plus / Minus

                                                                            
Query: 344      cctttttatcagaattctataaagcctcttcagaattgggcacagttcagcaggagccac 403
                ||||||||| || |||||||| ||||||||||  || ||||||||||||||||| || ||
Sbjct: 41241436 cctttttattagtattctatagagcctcttcaagatcgggcacagttcagcaggtgcaac 41241377

                                                                            
Query: 404      ttgcttgttttcctctgggtgtagaacacttaagctgggttgactgagcagctcaaaaaa 463
                |||||| ||||||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct: 41241376 ttgcttattttcctctgggtgttgcacacttaagctgggttgactgagaagctcaaaaaa 41241317

                                                  
Query: 464      tgcaccaacagcagaaataccctgtccagtgaaa 497
                ||||||||||||||| |||||||||  |||||||
Sbjct: 41241316 tgcaccaacagcagagataccctgtagagtgaaa 41241283



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                            
Query: 234      aggagagacgggcggtagaatgtgtggctctgcgccatctcgatcctctcacgagggtcg 293
                |||||||| |||||||||||||  ||||| ||||||||||| ||||| |||||||| || 
Sbjct: 41242014 aggagagatgggcggtagaatgcatggctttgcgccatctcaatcctttcacgaggatca 41241955

                                          
Query: 294      ttcatggtttcgtccctcagggcttg 319
                ||||||||||| || |||||||||||
Sbjct: 41241954 ttcatggtttcatctctcagggcttg 41241929
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>dbj|AP003412.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1150F11
          Length = 130355

 Score =  186 bits (94), Expect = 5e-44
 Identities = 139/154 (90%)
 Strand = Plus / Minus

                                                                         
Query: 344   cctttttatcagaattctataaagcctcttcagaattgggcacagttcagcaggagccac 403
             ||||||||| || |||||||| ||||||||||  || ||||||||||||||||| || ||
Sbjct: 58351 cctttttattagtattctatagagcctcttcaagatcgggcacagttcagcaggtgcaac 58292

                                                                         
Query: 404   ttgcttgttttcctctgggtgtagaacacttaagctgggttgactgagcagctcaaaaaa 463
             |||||| ||||||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct: 58291 ttgcttattttcctctgggtgttgcacacttaagctgggttgactgagaagctcaaaaaa 58232

                                               
Query: 464   tgcaccaacagcagaaataccctgtccagtgaaa 497
             ||||||||||||||| |||||||||  |||||||
Sbjct: 58231 tgcaccaacagcagagataccctgtagagtgaaa 58198



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                         
Query: 234   aggagagacgggcggtagaatgtgtggctctgcgccatctcgatcctctcacgagggtcg 293
             |||||||| |||||||||||||  ||||| ||||||||||| ||||| |||||||| || 
Sbjct: 58929 aggagagatgggcggtagaatgcatggctttgcgccatctcaatcctttcacgaggatca 58870

                                       
Query: 294   ttcatggtttcgtccctcagggcttg 319
             ||||||||||| || |||||||||||
Sbjct: 58869 ttcatggtttcatctctcagggcttg 58844
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>gb|AC135914.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0074P11, complete sequence
          Length = 148753

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 396   ggagccacttgcttgttttcctctgg 421
             ||||||||||||||||||| ||||||
Sbjct: 28035 ggagccacttgcttgttttactctgg 28010
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>emb|AL359292.12| Human DNA sequence from clone RP3-448K1 on chromosome 6 Contains the
            5' end of the AIM1 gene for absent in melanoma 1 and two
            CpG islands, complete sequence
          Length = 53905

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 411  ttttcctctgggtgtagaacacttaa 436
            |||||||||||||||||| |||||||
Sbjct: 6959 ttttcctctgggtgtagatcacttaa 6934
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 396     ggagccacttgcttgttttcctctgg 421
               ||||||||||||||||||| ||||||
Sbjct: 6797081 ggagccacttgcttgttttactctgg 6797056
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>emb|AL928704.10| Mouse DNA sequence from clone RP23-393G10 on chromosome 2, complete
             sequence
          Length = 171715

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 442   gttgactgagcagctcaaaaa 462
             |||||||||||||||||||||
Sbjct: 77664 gttgactgagcagctcaaaaa 77684
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>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 304     cgtccctcagggcttggaggatgtc 328
               ||||| |||||||||||||||||||
Sbjct: 5313421 cgtccttcagggcttggaggatgtc 5313445
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>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 304     cgtccctcagggcttggaggatgtc 328
               ||||| |||||||||||||||||||
Sbjct: 5283435 cgtccttcagggcttggaggatgtc 5283459
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>ref|XM_323660.1| Neurospora crassa OR74A predicted protein (NCU04321.1) partial mRNA
          Length = 4395

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  agccgaggtcacggcttccc 232
            ||||||||||||||||||||
Sbjct: 1212 agccgaggtcacggcttccc 1231
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>ref|XM_955874.1| Neurospora crassa OR74A hypothetical protein (NCU04321.1) partial
            mRNA
          Length = 4395

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  agccgaggtcacggcttccc 232
            ||||||||||||||||||||
Sbjct: 1212 agccgaggtcacggcttccc 1231
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>emb|BX927107.9| Zebrafish DNA sequence from clone CH211-281H20 in linkage group 7,
            complete sequence
          Length = 135772

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   tccaaatttccaaacacaca 93
            ||||||||||||||||||||
Sbjct: 3644 tccaaatttccaaacacaca 3663
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>ref|XM_810831.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053508739.30) partial mRNA
          Length = 996

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 457 caaaaaatgcaccaacagca 476
           ||||||||||||||||||||
Sbjct: 207 caaaaaatgcaccaacagca 188
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>ref|XM_810833.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053508739.50) partial mRNA
          Length = 2817

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 457  caaaaaatgcaccaacagca 476
            ||||||||||||||||||||
Sbjct: 1590 caaaaaatgcaccaacagca 1571
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>ref|XM_797493.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053509135.9) partial mRNA
          Length = 1893

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 457  caaaaaatgcaccaacagca 476
            ||||||||||||||||||||
Sbjct: 1584 caaaaaatgcaccaacagca 1565
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>gb|AC158532.2| Mus musculus BAC clone RP23-178C22 from chromosome 14, complete
             sequence
          Length = 188421

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 70    ggggtccaaatttccaaacacacaagcc 97
             |||| |||||| ||||||||||||||||
Sbjct: 62668 ggggaccaaatatccaaacacacaagcc 62695
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>emb|AL627407.10| Human DNA sequence from clone RP11-496J2 on chromosome X, complete
             sequence
          Length = 110978

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 489   ccagtgaaatgcagagcttatact 512
             |||| |||||||||||||||||||
Sbjct: 21561 ccagggaaatgcagagcttatact 21538
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>emb|AL356772.14| Human DNA sequence from clone RP11-47B24 on chromosome 10, complete
              sequence
          Length = 163861

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 453    agctcaaaaaatgcaccaac 472
              ||||||||||||||||||||
Sbjct: 136041 agctcaaaaaatgcaccaac 136022
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>emb|BX294026.1|NCB7H23 Neurospora crassa DNA linkage group V BAC contig B7H23
          Length = 114377

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   agccgaggtcacggcttccc 232
             ||||||||||||||||||||
Sbjct: 71870 agccgaggtcacggcttccc 71889
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>gb|AC113190.8| Homo sapiens chromosome 15, clone RP11-186H10, complete sequence
          Length = 161765

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 384    cacagttcagcaggagccac 403
              ||||||||||||||||||||
Sbjct: 155034 cacagttcagcaggagccac 155053
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>gb|AC112706.2| Homo sapiens chromosome 19 clone CTD-3195E18, complete sequence
          Length = 65069

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 399   gccacttgcttgttttcctc 418
             ||||||||||||||||||||
Sbjct: 59660 gccacttgcttgttttcctc 59679
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>gb|AC092074.3| Homo sapiens chromosome 19 clone X200282, complete sequence
          Length = 38986

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 399   gccacttgcttgttttcctc 418
             ||||||||||||||||||||
Sbjct: 34791 gccacttgcttgttttcctc 34810
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>emb|AL808027.14| Mouse DNA sequence from clone RP23-161B9 on chromosome 2, complete
              sequence
          Length = 241914

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 311    cagggcttggaggatgtctctcac 334
              ||||||||||||||||| ||||||
Sbjct: 187491 cagggcttggaggatgtttctcac 187468
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>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 503     agcttatactcagtcaatgc 522
               ||||||||||||||||||||
Sbjct: 1950574 agcttatactcagtcaatgc 1950593
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>emb|BX324225.7| Zebrafish DNA sequence from clone DKEY-180I22 in linkage group 21,
             complete sequence
          Length = 207125

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 529   tgaagaacacaaaagtgaac 548
             ||||||||||||||||||||
Sbjct: 11105 tgaagaacacaaaagtgaac 11086
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>emb|BX323808.7| Zebrafish DNA sequence from clone DKEY-117N4, complete sequence
          Length = 152686

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   tccaaatttccaaacacaca 93
            ||||||||||||||||||||
Sbjct: 3644 tccaaatttccaaacacaca 3663
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>gb|AC139063.11| Mus musculus chromosome 7, clone RP23-73F23, complete sequence
          Length = 202863

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 398    agccacttgcttgttttcct 417
              ||||||||||||||||||||
Sbjct: 107381 agccacttgcttgttttcct 107362
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>gb|AC074313.29| Mus musculus strain C57BL/6J clone rp23-412j23 map 7, complete sequence
          Length = 199260

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 398    agccacttgcttgttttcct 417
              ||||||||||||||||||||
Sbjct: 104734 agccacttgcttgttttcct 104753
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>gb|AC005319.1|AC005319 Human Chromosome 15q26.1 PAC clone pDJ430i19, complete sequence
          Length = 118741

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 384   cacagttcagcaggagccac 403
             ||||||||||||||||||||
Sbjct: 98818 cacagttcagcaggagccac 98799
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>gb|AC005379.1|AC005379 Homo sapiens chromosome 19, cosmid R32603, complete sequence
          Length = 45617

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 399  gccacttgcttgttttcctc 418
            ||||||||||||||||||||
Sbjct: 1171 gccacttgcttgttttcctc 1190
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>emb|AL845447.3| Mouse DNA sequence from clone RP23-133L20 on chromosome X, complete
             sequence
          Length = 105525

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   tttacaatctaatcatgtac 205
             ||||||||||||||||||||
Sbjct: 36032 tttacaatctaatcatgtac 36051


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,370,224
Number of Sequences: 3902068
Number of extensions: 4370224
Number of successful extensions: 81417
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81340
Number of HSP's gapped (non-prelim): 77
length of query: 556
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 533
effective length of database: 17,143,297,704
effective search space: 9137377676232
effective search space used: 9137377676232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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