Clone Name | rbasd21o03 |
---|---|
Clone Library Name | barley_pub |
>SUC3_ARATH (O80605) Sucrose transport protein SUC3 (Sucrose permease 3)| (Sucrose-proton symporter 3) (Sucrose transporter 2) Length = 594 Score = 61.6 bits (148), Expect(2) = 2e-20 Identities = 28/44 (63%), Positives = 36/44 (81%) Frame = -2 Query: 615 SLALFAFLGIPLAILYSVPFAVTAQLAANKGGGQGLCTGVLNIA 484 ++ +FA LG PLAI YSVPF+VTA++ A+ GGGQGL GVLN+A Sbjct: 491 AVIVFALLGFPLAITYSVPFSVTAEVTADSGGGQGLAIGVLNLA 534 Score = 57.0 bits (136), Expect(2) = 2e-20 Identities = 24/45 (53%), Positives = 35/45 (77%) Frame = -1 Query: 469 KVIIAVGAGPWDELFGKGNIPAFGMASVFALIGGVVGIFLLPKIS 335 ++I+++GAGPWD+LFG GN+PAF +ASV A GV+ + LP +S Sbjct: 539 QMIVSLGAGPWDQLFGGGNLPAFVLASVAAFAAGVIALQRLPTLS 583
>SUC2_ARATH (Q39231) Sucrose transport protein SUC2 (Sucrose permease 2)| (Sucrose-proton symporter 2) (Sucrose transporter 1) Length = 512 Score = 54.3 bits (129), Expect(2) = 1e-16 Identities = 25/44 (56%), Positives = 32/44 (72%) Frame = -2 Query: 615 SLALFAFLGIPLAILYSVPFAVTAQLAANKGGGQGLCTGVLNIA 484 +L LFA LGIP AI +S+PFA+ + + N G GQGL GVLN+A Sbjct: 407 ALTLFAILGIPQAITFSIPFALASIFSTNSGAGQGLSLGVLNLA 450 Score = 51.6 bits (122), Expect(2) = 1e-16 Identities = 21/42 (50%), Positives = 33/42 (78%) Frame = -1 Query: 469 KVIIAVGAGPWDELFGKGNIPAFGMASVFALIGGVVGIFLLP 344 +++I+VG GP+DELFG GNIPAF + ++ A + GV+ + +LP Sbjct: 455 QMVISVGGGPFDELFGGGNIPAFVLGAIAAAVSGVLALTVLP 496
>SUT_SPIOL (Q03411) Sucrose transport protein (Sucrose permease)| (Sucrose-proton symporter) Length = 525 Score = 56.6 bits (135), Expect(2) = 1e-15 Identities = 26/44 (59%), Positives = 35/44 (79%) Frame = -2 Query: 615 SLALFAFLGIPLAILYSVPFAVTAQLAANKGGGQGLCTGVLNIA 484 +LA+FA LGIPLAI +S+PFA+ + +A+ G GQGL GVLN+A Sbjct: 421 ALAIFAVLGIPLAITFSIPFALASIFSASSGSGQGLSLGVLNLA 464 Score = 45.8 bits (107), Expect(2) = 1e-15 Identities = 22/57 (38%), Positives = 32/57 (56%) Frame = -1 Query: 469 KVIIAVGAGPWDELFGKGNIPAFGMASVFALIGGVVGIFLLPKISRRQFRAVSGGGH 299 ++ ++V +GPWD +FG GN+PAF + +V A V+ LLP S GGH Sbjct: 469 QMFVSVTSGPWDAMFGGGNLPAFVVGAVAATASAVLSFTLLPSPPPEAKIGGSMGGH 525
>SUC1_ARATH (Q39232) Sucrose transport protein SUC1 (Sucrose permease 1)| (Sucrose-proton symporter 1) Length = 513 Score = 52.4 bits (124), Expect(2) = 2e-15 Identities = 25/44 (56%), Positives = 33/44 (75%) Frame = -2 Query: 615 SLALFAFLGIPLAILYSVPFAVTAQLAANKGGGQGLCTGVLNIA 484 +L+LFA LGIPLAI +S PFA+ + ++ G GQGL GVLN+A Sbjct: 408 ALSLFAVLGIPLAITFSTPFALASIFSSCSGAGQGLSLGVLNLA 451 Score = 49.7 bits (117), Expect(2) = 2e-15 Identities = 23/56 (41%), Positives = 38/56 (67%) Frame = -1 Query: 469 KVIIAVGAGPWDELFGKGNIPAFGMASVFALIGGVVGIFLLPKISRRQFRAVSGGG 302 ++I+++G GP+D LFG GN+PAF +A++ A I GV+ + +LP +A + GG Sbjct: 456 QMIVSLGGGPFDALFGGGNLPAFIVAAIAAAISGVLALTVLPSPPPDAPKATTMGG 511
>SUC4_ARATH (Q9FE59) Sucrose transport protein SUC4 (Sucrose permease 4)| (Sucrose-proton symporter 4) (Sucrose transporter 4) Length = 510 Score = 54.7 bits (130), Expect(2) = 2e-15 Identities = 22/43 (51%), Positives = 31/43 (72%) Frame = -1 Query: 469 KVIIAVGAGPWDELFGKGNIPAFGMASVFALIGGVVGIFLLPK 341 +VI++VG+GPWD+LFG GN PA + + IGG+V I LP+ Sbjct: 458 QVIVSVGSGPWDQLFGGGNSPALAVGAATGFIGGIVAILALPR 500 Score = 47.0 bits (110), Expect(2) = 2e-15 Identities = 23/44 (52%), Positives = 31/44 (70%) Frame = -2 Query: 615 SLALFAFLGIPLAILYSVPFAVTAQLAANKGGGQGLCTGVLNIA 484 ++ +F LGIPLAI YSVP+A+ + + G GQGL GVLN+A Sbjct: 410 AVLIFTILGIPLAITYSVPYALISIRIESLGLGQGLSLGVLNLA 453
>SUC9_ARATH (Q9FG00) Sucrose transport protein SUC9 (Sucrose permease 9)| (Sucrose-proton symporter 9) Length = 491 Score = 55.8 bits (133), Expect(2) = 6e-15 Identities = 25/44 (56%), Positives = 36/44 (81%) Frame = -2 Query: 615 SLALFAFLGIPLAILYSVPFAVTAQLAANKGGGQGLCTGVLNIA 484 +L+LFA LGIPLAI +S+PFA+ + ++++ G GQGL GVLN+A Sbjct: 402 ALSLFAILGIPLAITFSIPFALASIISSSSGAGQGLSLGVLNMA 445 Score = 44.3 bits (103), Expect(2) = 6e-15 Identities = 19/42 (45%), Positives = 29/42 (69%) Frame = -1 Query: 469 KVIIAVGAGPWDELFGKGNIPAFGMASVFALIGGVVGIFLLP 344 ++I++ G GP D LFG GN+P F + ++ ALI VV + +LP Sbjct: 450 QMIVSFGVGPIDALFGGGNLPGFVVGAIAALISSVVALTVLP 491
>SUC8_ARATH (Q9ZVK6) Sucrose transport protein SUC8 (Sucrose permease 8)| (Sucrose-proton symporter 8) Length = 492 Score = 55.5 bits (132), Expect(2) = 6e-14 Identities = 25/44 (56%), Positives = 35/44 (79%) Frame = -2 Query: 615 SLALFAFLGIPLAILYSVPFAVTAQLAANKGGGQGLCTGVLNIA 484 +L LFA LGIPLAI +S+PFA+ + ++++ G GQGL GVLN+A Sbjct: 403 ALTLFALLGIPLAITFSIPFALASIISSSSGAGQGLSLGVLNMA 446 Score = 41.2 bits (95), Expect(2) = 6e-14 Identities = 18/42 (42%), Positives = 27/42 (64%) Frame = -1 Query: 469 KVIIAVGAGPWDELFGKGNIPAFGMASVFALIGGVVGIFLLP 344 ++I++ G GP D LFG GN+P F + ++ A I VV +LP Sbjct: 451 QMIVSFGVGPIDALFGGGNLPRFVVGAIAAAISSVVAFTVLP 492
>SUC5_ARATH (Q9C8X2) Sucrose transport protein SUC5 (Sucrose permease 5)| (Sucrose-proton symporter 5) Length = 512 Score = 55.5 bits (132), Expect(2) = 2e-13 Identities = 26/42 (61%), Positives = 31/42 (73%) Frame = -2 Query: 609 ALFAFLGIPLAILYSVPFAVTAQLAANKGGGQGLCTGVLNIA 484 +LF LGIPLAI YS+PFA+ + + N G GQGL GVLNIA Sbjct: 409 SLFTVLGIPLAITYSIPFALASIFSTNSGAGQGLSLGVLNIA 450 Score = 39.7 bits (91), Expect(2) = 2e-13 Identities = 15/42 (35%), Positives = 29/42 (69%) Frame = -1 Query: 469 KVIIAVGAGPWDELFGKGNIPAFGMASVFALIGGVVGIFLLP 344 ++I++ +GP D FG GN+P+F + ++ A + GV+ + +LP Sbjct: 455 QMIVSFSSGPLDAQFGGGNLPSFVVGAIAAAVSGVLALTVLP 496
>SUC6_ARATH (Q6A329) Probable sucrose transport protein SUC6 (Sucrose permease| 6) (Sucrose-proton symporter 6) Length = 492 Score = 53.9 bits (128), Expect(2) = 2e-13 Identities = 24/43 (55%), Positives = 34/43 (79%) Frame = -2 Query: 615 SLALFAFLGIPLAILYSVPFAVTAQLAANKGGGQGLCTGVLNI 487 +L LFA LGIPLAI +S+PFA+ + ++++ G GQGL GVLN+ Sbjct: 403 ALTLFALLGIPLAITFSIPFALASIISSSSGAGQGLSLGVLNM 445 Score = 41.2 bits (95), Expect(2) = 2e-13 Identities = 17/42 (40%), Positives = 27/42 (64%) Frame = -1 Query: 469 KVIIAVGAGPWDELFGKGNIPAFGMASVFALIGGVVGIFLLP 344 +++++ G GP D LFG GN+P F + ++ A I VV +LP Sbjct: 451 QMVVSFGVGPIDALFGGGNLPGFVVGAIAAAISSVVAFSVLP 492
>SUC7_ARATH (Q67YF8) Probable sucrose transport protein SUC7 (Sucrose permease| 7) (Sucrose-proton symporter 7) Length = 491 Score = 52.4 bits (124), Expect(2) = 5e-13 Identities = 24/44 (54%), Positives = 34/44 (77%) Frame = -2 Query: 615 SLALFAFLGIPLAILYSVPFAVTAQLAANKGGGQGLCTGVLNIA 484 +L LFA LGIPLAI +S+PFA+ + ++++ G GQ L GVLN+A Sbjct: 402 ALTLFALLGIPLAITFSIPFALASIISSSSGAGQRLSLGVLNMA 445 Score = 41.2 bits (95), Expect(2) = 5e-13 Identities = 16/42 (38%), Positives = 27/42 (64%) Frame = -1 Query: 469 KVIIAVGAGPWDELFGKGNIPAFGMASVFALIGGVVGIFLLP 344 ++I++ G GP D LFG GN+P F + ++ A + +V +LP Sbjct: 450 QMIVSFGVGPIDALFGDGNLPGFVVGAIAAAVSSIVAFTVLP 491
>POLS_RUBV (P08564) Structural polyprotein [Contains: Spike glycoprotein E1;| Spike glycoprotein E2] (Fragment) Length = 522 Score = 32.7 bits (73), Expect = 0.87 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = +2 Query: 476 SRWAMFSTPVHSPCPPPLFAASCAVTAKGTLYRMARGIPRKAKRAR 613 SRW + S H+P PP FA + +TA+G L+ + +P R R Sbjct: 328 SRWGLGSPNCHAPIGPPRFANAIPLTARG-LWGPRQSVPAALGRRR 372
>HSY1_LYCES (Q7XAD0) Hydroxyproline-rich systemin precursor (Defense-signaling| glycopeptide hormone) [Contains: HypSys I (TomHypSys I); HypSys II (TomHypSys II); HypSys III (TomHypSys III)] Length = 146 Score = 32.3 bits (72), Expect = 1.1 Identities = 24/79 (30%), Positives = 32/79 (40%) Frame = +3 Query: 303 PPPLTARNWRLEILGSRNMPTTPPMSAKTDAMPNAGMLPLPNSSSHGPAPTAMITLRYHD 482 PPP ++ EI+ R+ PP S KTD P G L T + T +HD Sbjct: 56 PPPTSSSPTHQEIVNGRHDSVLPPPSPKTD--PIIGQL------------TTITTTPHHD 101 Query: 483 GRCSARPCTALVHRLCSPP 539 +A P + SPP Sbjct: 102 DTVAAPPVGGRHDYVASPP 120
>TMPS9_HUMAN (Q7Z410) Transmembrane protease, serine 9 (EC 3.4.21.-)| (Polyserase-1) (Polyserase-I) (Polyserine protease 1) [Contains: Serase-1; Serase-2; Serase-3] Length = 1059 Score = 32.0 bits (71), Expect = 1.5 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%) Frame = +3 Query: 321 RNWRLEILGSRNMPTTPP----MSAKTDAMPNAGMLPLPNSSSHGPAPTAMITLRYHDGR 488 + W LEI+ S+ +P +PP M A T AG L +P ++ P P A R Sbjct: 728 KGWILEIMSSQPLPMSPPSTTRMLATTSPRTTAG-LTVPGATPSRPTPGAA-------SR 779 Query: 489 CSARPCTALVHRLCSPPAAQSP 554 + +P + + + + Q+P Sbjct: 780 VTGQPANSTLSAVSTTARGQTP 801
>MEGF9_HUMAN (Q9H1U4) Multiple epidermal growth factor-like domains 9 precursor| (EGF-like domain-containing protein 5) (Multiple EGF-like domain protein 5) Length = 600 Score = 32.0 bits (71), Expect = 1.5 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 7/72 (9%) Frame = +3 Query: 360 PTTPPMSAKTDAMPNAGMLPLPN--SSSHGPAPTAMITLRYHDGRCSARPCTALVHR--- 524 PTTPP + +T A P P S++ GPAPT + P L Sbjct: 122 PTTPPAAERTSTTSQAPTRPAPTTLSTTTGPAPTTPVATTVPAPTTPRTPTPDLPSSSNS 181 Query: 525 --LCSPPAAQSP 554 L +PPA ++P Sbjct: 182 SVLPTPPATEAP 193
>FIBP_ADEM1 (P19721) Fiber protein (pIV)| Length = 613 Score = 32.0 bits (71), Expect = 1.5 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Frame = +3 Query: 333 LEILGSRNMPTTPPMSAKTDAMPNAGMLP-LPNSSSHGPAPTAMITLRYHDGRCSARPCT 509 +E+ + + PP TD + +L +PN+ + A T L++HD R S R T Sbjct: 511 MELAKEQAVQAQPPEHVNTDWADHMNLLRFMPNTLVYPTAATIAANLQFHDTRLSLRRAT 570 Query: 510 ALVHRLCSPPAA 545 + SP +A Sbjct: 571 LKIRLNGSPDSA 582
>PRDM2_RAT (Q63755) PR domain zinc finger protein 2 (PR domain-containing| protein 2) (Retinoblastoma protein-interacting zinc-finger protein) (Zinc finger protein RIZ) Length = 1706 Score = 24.6 bits (52), Expect(2) = 3.1 Identities = 15/44 (34%), Positives = 19/44 (43%) Frame = +2 Query: 437 PRPRTHRDDHLAVSRWAMFSTPVHSPCPPPLFAASCAVTAKGTL 568 P P T + S + S SP PPPL A S V++ L Sbjct: 1038 PGPPTLSSSSSSSSSFPSSSCSSTSPSPPPLSAVSSVVSSGDNL 1081 Score = 24.6 bits (52), Expect(2) = 3.1 Identities = 10/32 (31%), Positives = 15/32 (46%) Frame = +3 Query: 357 MPTTPPMSAKTDAMPNAGMLPLPNSSSHGPAP 452 +PT P +DA P P N+++ P P Sbjct: 982 LPTVPLSHPSSDASPQQCPSPFSNTTAQSPLP 1013
>LHX61_MOUSE (Q9R1R0) LIM/homeobox protein Lhx6.1| Length = 363 Score = 30.4 bits (67), Expect = 4.3 Identities = 22/63 (34%), Positives = 27/63 (42%) Frame = +3 Query: 363 TTPPMSAKTDAMPNAGMLPLPNSSSHGPAPTAMITLRYHDGRCSARPCTALVHRLCSPPA 542 TTPP A++DA AG L +GR S PCT +CSPP+ Sbjct: 18 TTPPAMAQSDAEALAGALDKD------------------EGRAS--PCTPSTPSVCSPPS 57 Query: 543 AQS 551 A S Sbjct: 58 AAS 60
>PREG_NEUCR (Q06712) Nuc-1 negative regulatory protein preg| Length = 483 Score = 30.4 bits (67), Expect = 4.3 Identities = 19/54 (35%), Positives = 23/54 (42%) Frame = +3 Query: 306 PPLTARNWRLEILGSRNMPTTPPMSAKTDAMPNAGMLPLPNSSSHGPAPTAMIT 467 P L R+ L SR T P ++ T LP+ S HGPAP A T Sbjct: 47 PSLREAASRIPALSSRRQSATAPATSSTS-------LPISIQSRHGPAPVASHT 93
>TLE3_MOUSE (Q08122) Transducin-like enhancer protein 3 (ESG) (Grg-3)| Length = 771 Score = 30.0 bits (66), Expect = 5.7 Identities = 21/67 (31%), Positives = 34/67 (50%) Frame = +3 Query: 345 GSRNMPTTPPMSAKTDAMPNAGMLPLPNSSSHGPAPTAMITLRYHDGRCSARPCTALVHR 524 G R+MP PP M +A P+ +SS+ PAP AM++ +G ++ A +H Sbjct: 335 GLRSMPGKPPGMDPIGIMASALRTPITLTSSY-PAPFAMMSHHEMNGSLTSPSAYAGLHN 393 Query: 525 LCSPPAA 545 + S +A Sbjct: 394 IPSQMSA 400
>ATM_PIG (Q6PQD5) Serine-protein kinase ATM (EC 2.7.11.1) (Ataxia| telangiectasia mutated homolog) (A-T, mutated homolog) Length = 3056 Score = 30.0 bits (66), Expect = 5.7 Identities = 21/58 (36%), Positives = 28/58 (48%) Frame = +1 Query: 40 SHNPKDDTPAGDGCPHPPVHFPLHTVTLTGTHIQTQHIRFPTILILLYGVLRREPPSY 213 S +P D + D P+PP HFP H + T +I H T L + VL + P SY Sbjct: 1362 STDPCDFSGDLDPRPNPP-HFPSHVIKATFAYISNCH---KTKLKSILEVLSKSPDSY 1415
>ATM_HUMAN (Q13315) Serine-protein kinase ATM (EC 2.7.11.1) (Ataxia| telangiectasia mutated) (A-T, mutated) Length = 3056 Score = 29.6 bits (65), Expect = 7.4 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = +1 Query: 73 DGCPHPPVHFPLHTVTLTGTHIQTQHIRFPTILILLYGVLRREPPSY 213 D P+PP HFP H + T +I H T L + +L + P SY Sbjct: 1373 DPAPNPP-HFPSHVIKATFAYISNCH---KTKLKSILEILSKSPDSY 1415
>UL61_HCMVA (P16818) Hypothetical protein UL61| Length = 431 Score = 29.6 bits (65), Expect = 7.4 Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 1/81 (1%) Frame = +3 Query: 345 GSRNMPTTPPMSAKTDAMPNAGMLPLPNSSSHGPAPTAMITLRYHDG-RCSARPCTALVH 521 G R PP ++ + + PLP + PAP + G R S P T + Sbjct: 115 GGRGAQPEPPRGSRRETRKPSRSTPLPELLTGPPAPNLPGPIAVEPGRRPSPPPSTRPTY 174 Query: 522 RLCSPPAAQSPRKGHCTEWPE 584 R P AA RK P+ Sbjct: 175 RRRRPTAATPSRKKKARRGPK 195
>DYN_DROME (P27619) Dynamin (EC 3.6.5.5) (dDyn) (Protein shibire)| Length = 877 Score = 29.3 bits (64), Expect = 9.7 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 3/47 (6%) Frame = +3 Query: 342 LGSRNMPTTPPMSAKTDAMPN---AGMLPLPNSSSHGPAPTAMITLR 473 LG RN P P A+PN G PLP G P M+ R Sbjct: 783 LGGRNPPLPPSTGRPAPAIPNRPGGGAPPLPGGRPGGSLPPPMLPSR 829 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,216,226 Number of Sequences: 219361 Number of extensions: 1749939 Number of successful extensions: 5368 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 5036 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5360 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)