ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21o02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_549989.1| Oryza sativa (japonica cultivar-group), mRNA 305 8e-80
2dbj|AK103631.1| Oryza sativa (japonica cultivar-group) cDNA clon... 305 8e-80
3gb|AY104137.1| Zea mays PCO146094 mRNA sequence 295 8e-77
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 242 1e-60
5dbj|AP003233.3| Oryza sativa (japonica cultivar-group) genomic D... 242 1e-60
6dbj|AP002909.2| Oryza sativa (japonica cultivar-group) genomic D... 242 1e-60
7emb|AL807771.6| Mouse DNA sequence from clone RP23-141C15 on chr... 48 0.031
8gb|AC144658.33| Medicago truncatula clone mth2-31g20, complete s... 46 0.12
9ref|NM_127245.2| Arabidopsis thaliana ubiquitin conjugating enzy... 42 1.9
10ref|NM_179887.1| Arabidopsis thaliana ubiquitin conjugating enzy... 42 1.9
11ref|XM_475903.1| Oryza sativa (japonica cultivar-group), predic... 42 1.9
12gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
13gb|AY091326.1| Arabidopsis thaliana putative ubiquitin-conjugati... 42 1.9
14gb|AY074292.1| Arabidopsis thaliana putative E2, ubiquitin-conju... 42 1.9
15emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 42 1.9
16gb|U78721.3| Arabidopsis thaliana chromosome 2 clone T1B8 map TE... 42 1.9
17gb|AC005167.3| Arabidopsis thaliana chromosome 2 clone F12A24 ma... 42 1.9
18dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
19gb|DQ027037.1| Arabidopsis thaliana ubiquitinating enzyme (At2g3... 42 1.9
20emb|BX957253.12| Zebrafish DNA sequence from clone DKEY-234L14 i... 40 7.5
21emb|AL627308.20| Human DNA sequence from clone RP11-211A18 on ch... 40 7.5
22emb|AL513550.9| Human DNA sequence from clone RP11-98I9 on chrom... 40 7.5
23dbj|AK027751.1| Homo sapiens cDNA FLJ14845 fis, clone PLACE1000308 40 7.5
24dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020 40 7.5
25gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 40 7.5
26gb|AC093381.5| Homo sapiens BAC clone RP11-436J10 from 2, comple... 40 7.5
27emb|AL954215.1| Pan troglodytes chromosome 22 clone RP43-034B14 ... 40 7.5
28dbj|AK115981.1| Ciona intestinalis cDNA, clone:citb002p15, full ... 40 7.5
29gb|AC087242.10| Homo sapiens 12 BAC RP11-361I14 (Roswell Park Ca... 40 7.5 
>ref|XM_549989.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3562

 Score =  305 bits (154), Expect = 8e-80
 Identities = 272/313 (86%)
 Strand = Plus / Minus

                                                                        
Query: 238  cttgcaagtaggcctcacaagctttgagaatgnagtgcccacgcttgcagaagtgacttt 297
            ||||||| |||||||||||||||||||||||| | |  ||||||||| ||||||| || |
Sbjct: 3262 cttgcaaataggcctcacaagctttgagaatgtatttgccacgcttggagaagtggctct 3203

                                                                        
Query: 298  tcacaaaatcctcgaaattcataggaggccgcctcaagatatacaacatggatttcacgc 357
            |  |||| |||||||||| ||| ||||| ||||||| |||||||||||||||||||| ||
Sbjct: 3202 ttgcaaagtcctcgaaatgcattggaggtcgcctcaggatatacaacatggatttcaagc 3143

                                                                        
Query: 358  ttancanatatgtgtnttcattgtatggcagtgcattcttctccccttcaacagtaccga 417
            | | || ||||||||  ||||| ||||||| ||||||||||||||||||||||||||| |
Sbjct: 3142 tcagcagatatgtgttctcattatatggcaatgcattcttctccccttcaacagtaccaa 3083

                                                                        
Query: 418  cttgttnttcatatccagcttcattgaaatagggcttttcattgagaactagtccctgaa 477
            |||| |  ||||| ||||||||||| ||||| ||||||||||| ||||| |  |||||||
Sbjct: 3082 cttgcttctcatagccagcttcattaaaataaggcttttcatttagaaccaagccctgaa 3023

                                                                        
Query: 478  gtgagactagtacttggagaatactagatgaggatggatcccatacttcattccctctgc 537
            |||| || || |||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 3022 gtgaaaccaggacttggagaatactggatgatgatggatcccatacttcattccctctgc 2963

                         
Query: 538  cagtccaagtatt 550
            | ||||| |||||
Sbjct: 2962 ccgtccaggtatt 2950
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>dbj|AK103631.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133P14, full
            insert sequence
          Length = 3560

 Score =  305 bits (154), Expect = 8e-80
 Identities = 272/313 (86%)
 Strand = Plus / Minus

                                                                        
Query: 238  cttgcaagtaggcctcacaagctttgagaatgnagtgcccacgcttgcagaagtgacttt 297
            ||||||| |||||||||||||||||||||||| | |  ||||||||| ||||||| || |
Sbjct: 3260 cttgcaaataggcctcacaagctttgagaatgtatttgccacgcttggagaagtggctct 3201

                                                                        
Query: 298  tcacaaaatcctcgaaattcataggaggccgcctcaagatatacaacatggatttcacgc 357
            |  |||| |||||||||| ||| ||||| ||||||| |||||||||||||||||||| ||
Sbjct: 3200 ttgcaaagtcctcgaaatgcattggaggtcgcctcaggatatacaacatggatttcaagc 3141

                                                                        
Query: 358  ttancanatatgtgtnttcattgtatggcagtgcattcttctccccttcaacagtaccga 417
            | | || ||||||||  ||||| ||||||| ||||||||||||||||||||||||||| |
Sbjct: 3140 tcagcagatatgtgttctcattatatggcaatgcattcttctccccttcaacagtaccaa 3081

                                                                        
Query: 418  cttgttnttcatatccagcttcattgaaatagggcttttcattgagaactagtccctgaa 477
            |||| |  ||||| ||||||||||| ||||| ||||||||||| ||||| |  |||||||
Sbjct: 3080 cttgcttctcatagccagcttcattaaaataaggcttttcatttagaaccaagccctgaa 3021

                                                                        
Query: 478  gtgagactagtacttggagaatactagatgaggatggatcccatacttcattccctctgc 537
            |||| || || |||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 3020 gtgaaaccaggacttggagaatactggatgatgatggatcccatacttcattccctctgc 2961

                         
Query: 538  cagtccaagtatt 550
            | ||||| |||||
Sbjct: 2960 ccgtccaggtatt 2948
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>gb|AY104137.1| Zea mays PCO146094 mRNA sequence
          Length = 990

 Score =  295 bits (149), Expect = 8e-77
 Identities = 273/316 (86%)
 Strand = Plus / Minus

                                                                       
Query: 238 cttgcaagtaggcctcacaagctttgagaatgnagtgcccacgcttgcagaagtgacttt 297
           ||||||| || |||||||| ||||| || ||| |||| |||||||||| |||||| || |
Sbjct: 615 cttgcaaatatgcctcacaggctttaaggatgtagtgaccacgcttgcggaagtggctct 556

                                                                       
Query: 298 tcacaaaatcctcgaaattcataggaggccgcctcaagatatacaacatggatttcacgc 357
           ||||||||||||| |||| || ||||||||| ||||| ||||||| ||||||||||||||
Sbjct: 555 tcacaaaatcctcaaaatgcaaaggaggccgtctcaatatatacagcatggatttcacgc 496

                                                                       
Query: 358 ttancanatatgtgtnttcattgtatggcagtgcattcttctccccttcaacagtaccga 417
           | | ||  || || |  ||||| || |||| ||||||||||||||||||||||||||| |
Sbjct: 495 tcagcaggtacgtattctcattatacggcactgcattcttctccccttcaacagtaccaa 436

                                                                       
Query: 418 cttgttnttcatatccagcttcattgaaatagggcttttcattgagaactagtccctgaa 477
           |||| |  ||||| ||||| ||||| |||||||| |||||||||||||| | ||||||||
Sbjct: 435 cttgcttctcatacccagcctcattaaaatagggtttttcattgagaaccaatccctgaa 376

                                                                       
Query: 478 gtgagactagtacttggagaatactagatgaggatggatcccatacttcattccctctgc 537
           |||| |||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||
Sbjct: 375 gtgaaactagtacttggagaatacttgatgatgatggatcccaaacttcgttccctctgc 316

                           
Query: 538 cagtccaagtatttaa 553
           ||||||| ||||||||
Sbjct: 315 cagtccaggtatttaa 300
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  242 bits (122), Expect = 1e-60
 Identities = 202/230 (87%)
 Strand = Plus / Minus

                                                                           
Query: 321     ggaggccgcctcaagatatacaacatggatttcacgcttancanatatgtgtnttcattg 380
               ||||| ||||||| |||||||||||||||||||| ||| | || ||||||||  ||||| 
Sbjct: 1425927 ggaggtcgcctcaggatatacaacatggatttcaagctcagcagatatgtgttctcatta 1425868

                                                                           
Query: 381     tatggcagtgcattcttctccccttcaacagtaccgacttgttnttcatatccagcttca 440
               ||||||| ||||||||||||||||||||||||||| ||||| |  ||||| |||||||||
Sbjct: 1425867 tatggcaatgcattcttctccccttcaacagtaccaacttgcttctcatagccagcttca 1425808

                                                                           
Query: 441     ttgaaatagggcttttcattgagaactagtccctgaagtgagactagtacttggagaata 500
               || ||||| ||||||||||| ||||| |  ||||||||||| || || ||||||||||||
Sbjct: 1425807 ttaaaataaggcttttcatttagaaccaagccctgaagtgaaaccaggacttggagaata 1425748

                                                                 
Query: 501     ctagatgaggatggatcccatacttcattccctctgccagtccaagtatt 550
               || ||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 1425747 ctggatgatgatggatcccatacttcattccctctgcccgtccaggtatt 1425698



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                           
Query: 238     cttgcaagtaggcctcacaagctttgagaatgnagtgcccacgcttgcagaagtgacttt 297
               ||||||| |||||||||||||||||||||||| | |  ||||||||| ||||||| || |
Sbjct: 1426350 cttgcaaataggcctcacaagctttgagaatgtatttgccacgcttggagaagtggctct 1426291

                                 
Query: 298     tcacaaaatcctcgaaat 315
               |  |||| ||||||||||
Sbjct: 1426290 ttgcaaagtcctcgaaat 1426273
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>dbj|AP003233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0037C04
          Length = 137879

 Score =  242 bits (122), Expect = 1e-60
 Identities = 202/230 (87%)
 Strand = Plus / Minus

                                                                          
Query: 321    ggaggccgcctcaagatatacaacatggatttcacgcttancanatatgtgtnttcattg 380
              ||||| ||||||| |||||||||||||||||||| ||| | || ||||||||  ||||| 
Sbjct: 123978 ggaggtcgcctcaggatatacaacatggatttcaagctcagcagatatgtgttctcatta 123919

                                                                          
Query: 381    tatggcagtgcattcttctccccttcaacagtaccgacttgttnttcatatccagcttca 440
              ||||||| ||||||||||||||||||||||||||| ||||| |  ||||| |||||||||
Sbjct: 123918 tatggcaatgcattcttctccccttcaacagtaccaacttgcttctcatagccagcttca 123859

                                                                          
Query: 441    ttgaaatagggcttttcattgagaactagtccctgaagtgagactagtacttggagaata 500
              || ||||| ||||||||||| ||||| |  ||||||||||| || || ||||||||||||
Sbjct: 123858 ttaaaataaggcttttcatttagaaccaagccctgaagtgaaaccaggacttggagaata 123799

                                                                
Query: 501    ctagatgaggatggatcccatacttcattccctctgccagtccaagtatt 550
              || ||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 123798 ctggatgatgatggatcccatacttcattccctctgcccgtccaggtatt 123749



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                          
Query: 238    cttgcaagtaggcctcacaagctttgagaatgnagtgcccacgcttgcagaagtgacttt 297
              ||||||| |||||||||||||||||||||||| | |  ||||||||| ||||||| || |
Sbjct: 124401 cttgcaaataggcctcacaagctttgagaatgtatttgccacgcttggagaagtggctct 124342

                                
Query: 298    tcacaaaatcctcgaaat 315
              |  |||| ||||||||||
Sbjct: 124341 ttgcaaagtcctcgaaat 124324
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>dbj|AP002909.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0044F08
          Length = 141528

 Score =  242 bits (122), Expect = 1e-60
 Identities = 202/230 (87%)
 Strand = Plus / Minus

                                                                         
Query: 321   ggaggccgcctcaagatatacaacatggatttcacgcttancanatatgtgtnttcattg 380
             ||||| ||||||| |||||||||||||||||||| ||| | || ||||||||  ||||| 
Sbjct: 75548 ggaggtcgcctcaggatatacaacatggatttcaagctcagcagatatgtgttctcatta 75489

                                                                         
Query: 381   tatggcagtgcattcttctccccttcaacagtaccgacttgttnttcatatccagcttca 440
             ||||||| ||||||||||||||||||||||||||| ||||| |  ||||| |||||||||
Sbjct: 75488 tatggcaatgcattcttctccccttcaacagtaccaacttgcttctcatagccagcttca 75429

                                                                         
Query: 441   ttgaaatagggcttttcattgagaactagtccctgaagtgagactagtacttggagaata 500
             || ||||| ||||||||||| ||||| |  ||||||||||| || || ||||||||||||
Sbjct: 75428 ttaaaataaggcttttcatttagaaccaagccctgaagtgaaaccaggacttggagaata 75369

                                                               
Query: 501   ctagatgaggatggatcccatacttcattccctctgccagtccaagtatt 550
             || ||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 75368 ctggatgatgatggatcccatacttcattccctctgcccgtccaggtatt 75319



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                         
Query: 238   cttgcaagtaggcctcacaagctttgagaatgnagtgcccacgcttgcagaagtgacttt 297
             ||||||| |||||||||||||||||||||||| | |  ||||||||| ||||||| || |
Sbjct: 75971 cttgcaaataggcctcacaagctttgagaatgtatttgccacgcttggagaagtggctct 75912

                               
Query: 298   tcacaaaatcctcgaaat 315
             |  |||| ||||||||||
Sbjct: 75911 ttgcaaagtcctcgaaat 75894
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>emb|AL807771.6| Mouse DNA sequence from clone RP23-141C15 on chromosome 4, complete
              sequence
          Length = 233077

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 160    tgaagcccatggagcaggagtact 183
              ||||||||||||||||||||||||
Sbjct: 142736 tgaagcccatggagcaggagtact 142759
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>gb|AC144658.33| Medicago truncatula clone mth2-31g20, complete sequence
          Length = 119041

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 430   atccagcttcattgaaatagggctttt 456
             ||||||||||||||||||| |||||||
Sbjct: 71682 atccagcttcattgaaataaggctttt 71656
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>ref|NM_127245.2| Arabidopsis thaliana ubiquitin conjugating enzyme/ ubiquitin-like
            activating enzyme AT2G16920 mRNA, complete cds
          Length = 3665

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 99/125 (79%)
 Strand = Plus / Minus

                                                                        
Query: 426  tcatatccagcttcattgaaatagggcttttcattgagaactagtccctgaagtgagact 485
            ||||| || |||||||||||||| ||||||  ||| |  || | |||||| ||||| || 
Sbjct: 2968 tcatacccggcttcattgaaataaggctttgaattcaacaccaatccctggagtgaaaca 2909

                                                                        
Query: 486  agtacttggagaatactagatgaggatggatcccatacttcattccctctgccagtccaa 545
            || ||||| || || ||||||||    |||||||| |||||||| || ||||| ||||| 
Sbjct: 2908 agaacttgaaggatgctagatgatttgggatcccagacttcatttcccctgcctgtccag 2849

                 
Query: 546  gtatt 550
            |||||
Sbjct: 2848 gtatt 2844
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>ref|NM_179887.1| Arabidopsis thaliana ubiquitin conjugating enzyme AT2G33770 mRNA,
            complete cds
          Length = 4102

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 426  tcatatccagcttcattgaaatagggcttttcattgagaac 466
            ||||| |||||||||||||| || ||||| ||||| |||||
Sbjct: 3533 tcatagccagcttcattgaagtaaggcttctcattcagaac 3493
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>ref|XM_475903.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2982

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 426  tcatatccagcttcattgaaatagggcttttcattgagaac 466
            ||||| ||||| |||||||| || || ||||||||||||||
Sbjct: 2645 tcatagccagcctcattgaagtaaggtttttcattgagaac 2605
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>gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1214_E03,
              complete sequence
          Length = 144601

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 426    tcatatccagcttcattgaaatagggcttttcattgagaac 466
              ||||| ||||| |||||||| || || ||||||||||||||
Sbjct: 117024 tcatagccagcctcattgaagtaaggtttttcattgagaac 117064
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>gb|AY091326.1| Arabidopsis thaliana putative ubiquitin-conjugating enzyme E2
            (At2g33770) mRNA, complete cds
          Length = 2755

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 426  tcatatccagcttcattgaaatagggcttttcattgagaac 466
            ||||| |||||||||||||| || ||||| ||||| |||||
Sbjct: 2381 tcatagccagcttcattgaagtaaggcttctcattcagaac 2341
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>gb|AY074292.1| Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme
            (At2g33770) mRNA, complete cds
          Length = 4118

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 426  tcatatccagcttcattgaaatagggcttttcattgagaac 466
            ||||| |||||||||||||| || ||||| ||||| |||||
Sbjct: 3533 tcatagccagcttcattgaagtaaggcttctcattcagaac 3493
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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 506     tgaggatggatcccatacttc 526
               |||||||||||||||||||||
Sbjct: 1506231 tgaggatggatcccatacttc 1506211
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>gb|U78721.3| Arabidopsis thaliana chromosome 2 clone T1B8 map TEn5, complete
             sequence
          Length = 114144

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 426   tcatatccagcttcattgaaatagggcttttcattgagaac 466
             ||||| |||||||||||||| || ||||| ||||| |||||
Sbjct: 31265 tcatagccagcttcattgaagtaaggcttctcattcagaac 31305
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>gb|AC005167.3| Arabidopsis thaliana chromosome 2 clone F12A24 map mi398, complete
             sequence
          Length = 93861

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 99/125 (79%)
 Strand = Plus / Plus

                                                                         
Query: 426   tcatatccagcttcattgaaatagggcttttcattgagaactagtccctgaagtgagact 485
             ||||| || |||||||||||||| ||||||  ||| |  || | |||||| ||||| || 
Sbjct: 42207 tcatacccggcttcattgaaataaggctttgaattcaacaccaatccctggagtgaaaca 42266

                                                                         
Query: 486   agtacttggagaatactagatgaggatggatcccatacttcattccctctgccagtccaa 545
             || ||||| || || ||||||||    |||||||| |||||||| || ||||| ||||| 
Sbjct: 42267 agaacttgaaggatgctagatgatttgggatcccagacttcatttcccctgcctgtccag 42326

                  
Query: 546   gtatt 550
             |||||
Sbjct: 42327 gtatt 42331
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 426      tcatatccagcttcattgaaatagggcttttcattgagaac 466
                ||||| ||||| |||||||| || || ||||||||||||||
Sbjct: 27520894 tcatagccagcctcattgaagtaaggtttttcattgagaac 27520934
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>gb|DQ027037.1| Arabidopsis thaliana ubiquitinating enzyme (At2g33770) mRNA, complete
            cds
          Length = 2724

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 426  tcatatccagcttcattgaaatagggcttttcattgagaac 466
            ||||| |||||||||||||| || ||||| ||||| |||||
Sbjct: 2381 tcatagccagcttcattgaagtaaggcttctcattcagaac 2341
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>emb|BX957253.12| Zebrafish DNA sequence from clone DKEY-234L14 in linkage group 7,
              complete sequence
          Length = 197310

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 374    ttcattgtatggcagtgcat 393
              ||||||||||||||||||||
Sbjct: 103542 ttcattgtatggcagtgcat 103561
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>emb|AL627308.20| Human DNA sequence from clone RP11-211A18 on chromosome 1 Contains
            the 5' end of the CDC42BPA gene for CDC42 binding protein
            kinase alpha (DMPK-like), a cathepsin B (CTSB)
            pseudogene, a novel pseudogene and a CpG island, complete
            sequence
          Length = 124156

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 427  catatccagcttcattgaaa 446
            ||||||||||||||||||||
Sbjct: 3944 catatccagcttcattgaaa 3963
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>emb|AL513550.9| Human DNA sequence from clone RP11-98I9 on chromosome 6 Contains the
             gene for hexaprenyldihydroxybenzoate methyltransferase,
             mitochondrial precursor (COQ3), the gene for SR rich
             protein (FLJ14992), the USP45 gene for ubiquitin specific
             protease 45, the 3' end of the gene for a novel protein
             similar to ubiquitin carboxyl-terminal hydrolase 16 (EC
             3.1.2.15) and 2 CpG islands, complete sequence
          Length = 127905

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 521   tacttcattccctctgccag 540
             ||||||||||||||||||||
Sbjct: 55505 tacttcattccctctgccag 55486
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>dbj|AK027751.1| Homo sapiens cDNA FLJ14845 fis, clone PLACE1000308
          Length = 1939

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 521 tacttcattccctctgccag 540
           ||||||||||||||||||||
Sbjct: 810 tacttcattccctctgccag 829
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>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020
          Length = 1824958

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 331     tcaagatatacaacatggat 350
               ||||||||||||||||||||
Sbjct: 1658799 tcaagatatacaacatggat 1658780
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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 64      cttcggtcttcccgaggtgc 83
               ||||||||||||||||||||
Sbjct: 2777885 cttcggtcttcccgaggtgc 2777866
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>gb|AC093381.5| Homo sapiens BAC clone RP11-436J10 from 2, complete sequence
          Length = 121777

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 492    tggagaatactagatgagga 511
              ||||||||||||||||||||
Sbjct: 110082 tggagaatactagatgagga 110101
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>emb|AL954215.1| Pan troglodytes chromosome 22 clone RP43-034B14 map 22q22.11, complete
              sequence
          Length = 153187

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 526    cattccctctgccagtccaagtatttaa 553
              ||||||||| ||||| ||||||||||||
Sbjct: 142652 cattccctcagccagcccaagtatttaa 142679
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>dbj|AK115981.1| Ciona intestinalis cDNA, clone:citb002p15, full insert sequence
          Length = 1495

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 281 cttgcagaagtgacttttca 300
           ||||||||||||||||||||
Sbjct: 64  cttgcagaagtgacttttca 45
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>gb|AC087242.10| Homo sapiens 12 BAC RP11-361I14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 114097

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 336   atatacaacatggatttcac 355
             ||||||||||||||||||||
Sbjct: 32781 atatacaacatggatttcac 32800


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,628,500
Number of Sequences: 3902068
Number of extensions: 3628500
Number of successful extensions: 55534
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 55437
Number of HSP's gapped (non-prelim): 98
length of query: 553
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 530
effective length of database: 17,143,297,704
effective search space: 9085947783120
effective search space used: 9085947783120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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