ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22c18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018814.1| Zea mays clone EL01N0531A02.d mRNA sequence 133 6e-28
2gb|AF215854.1|AF215854 Zea mays hexose transporter (pGlcT) mRNA,... 133 6e-28
3ref|XM_550032.1| Oryza sativa (japonica cultivar-group), mRNA 123 6e-25
4dbj|AK065247.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 6e-25
5gb|AY112449.1| Zea mays CL1214_1 mRNA sequence 111 2e-21
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
7dbj|AP003214.3| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
8gb|AY608701.1| Vitis vinifera plastid hexose transporter mRNA, c... 52 0.002
9emb|CR381641.12| Zebrafish DNA sequence from clone DKEY-189N10 i... 44 0.43
10gb|AC167243.3| Mus musculus BAC clone RP24-144E2 from chromosome... 40 6.7
11gb|BC100141.1| Rattus norvegicus HLA-B-associated transcript 3, ... 40 6.7
12ref|NM_182844.1| Rattus norvegicus myosin VIIA and Rab interacti... 40 6.7
13gb|AC137848.31| Mus musculus chromosome 9, clone RP24-118I23, co... 40 6.7
14ref|NM_001033968.1| Rattus norvegicus HLA-B-associated transcrip... 40 6.7
15ref|NM_053609.2| Rattus norvegicus HLA-B-associated transcript 3... 40 6.7
16gb|AC102661.7| Mus musculus chromosome 3, clone RP23-114K16, com... 40 6.7
17gb|AC165242.6| Mus musculus chromosome 3, clone RP24-98F15, comp... 40 6.7
18ref|XM_001001862.1| PREDICTED: Mus musculus myosin VIIA and Rab ... 40 6.7
19ref|XM_001001869.1| PREDICTED: Mus musculus myosin VIIA and Rab ... 40 6.7
20emb|AJ508935.1|PFR508935 Propionibacterium freudenreichii subsp.... 40 6.7
21gb|AY294063.1| Pinus monticola putative NBS-LRR protein GI5033 (... 40 6.7
22gb|AY331984.1| Rattus norvegicus myosin VIIA and Rab interacting... 40 6.7
23emb|BX883045.1| Rattus norvegicus chromosome 20, major histocomp... 40 6.7
24gb|BC085713.1| Rattus norvegicus phosphate cytidylyltransferase ... 40 6.7
25gb|AY099470.1| Mus musculus exophilin 8 mRNA, complete cds 40 6.7
26gb|AF396688.1| Mus musculus rab effector MYRIP (Myrip) mRNA, com... 40 6.7
27dbj|AK148358.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-len... 40 6.7
28dbj|AK038988.1| Mus musculus adult male hypothalamus cDNA, RIKEN... 40 6.7
29dbj|AK083225.1| Mus musculus adult male hippocampus cDNA, RIKEN ... 40 6.7
30gb|AY585926.1| Paxillus involutus strain ATCC 200175 CipC1 prote... 40 6.7
31gb|AC147283.3| Pan troglodytes BAC clone RP43-94K2 from chromoso... 40 6.7
32gb|AC083861.2|AC083861 Homo sapiens chromosome 7 clone RP11-164E... 40 6.7
33gb|AC007444.1|AC007444 Homo sapiens clone RP11-340F1 from 7p14-1... 40 6.7
34dbj|AB083782.1| Mus musculus slac2-c mRNA for Slp homologue lack... 40 6.7
35ref|NM_144557.2| Mus musculus myosin VIIA and Rab interacting pr... 40 6.7
36dbj|AB018791.1| Rattus norvegicus mRNA for BAT3, complete cds 40 6.7 
>gb|BT018814.1| Zea mays clone EL01N0531A02.d mRNA sequence
          Length = 2008

 Score =  133 bits (67), Expect = 6e-28
 Identities = 142/167 (85%)
 Strand = Plus / Minus

                                                                        
Query: 321  atctcttctagggatcgccccttggtctcgaccacattgccggctatgtacaggaccgcg 380
            |||||||| ||||||| |||||||| |||||||||||| || ||||||||||| || || 
Sbjct: 1720 atctcttcaagggatctccccttgggctcgaccacattcccagctatgtacagaactgca 1661

                                                                        
Query: 381  agagcgcacacggacgcgaaacccaagtacacggtgctgatcccaaacttgttgacgacg 440
            || || || || || || || ||||  |||||| ||||||||||||||||| | ||||| 
Sbjct: 1660 agggcacatactgatgcaaatcccagatacacgttgctgatcccaaacttgctcacgaca 1601

                                                           
Query: 441  ctcaggaagtacagtccgatgaagaagttggatacccagtgcatgcc 487
            |||||||||||||| || ||||| ||||| |||||||||||||||||
Sbjct: 1600 ctcaggaagtacaggccaatgaaaaagttagatacccagtgcatgcc 1554
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>gb|AF215854.1|AF215854 Zea mays hexose transporter (pGlcT) mRNA, partial cds; nuclear gene
            for chloroplast product
          Length = 1874

 Score =  133 bits (67), Expect = 6e-28
 Identities = 142/167 (85%)
 Strand = Plus / Minus

                                                                        
Query: 321  atctcttctagggatcgccccttggtctcgaccacattgccggctatgtacaggaccgcg 380
            |||||||| || |||| ||||||||||||||||||||| || ||||||||||| || || 
Sbjct: 1602 atctcttcaagtgatctccccttggtctcgaccacattcccagctatgtacagaactgca 1543

                                                                        
Query: 381  agagcgcacacggacgcgaaacccaagtacacggtgctgatcccaaacttgttgacgacg 440
            || || || || || || || ||||  |||||| ||||||||||||||||| | ||||| 
Sbjct: 1542 agggcacatactgatgcaaatcccagatacacgttgctgatcccaaacttgctcacgaca 1483

                                                           
Query: 441  ctcaggaagtacagtccgatgaagaagttggatacccagtgcatgcc 487
            |||||||||||||| || ||||| ||||| |||||||||||||||||
Sbjct: 1482 ctcaggaagtacaggccaatgaaaaagttagatacccagtgcatgcc 1436
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>ref|XM_550032.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1980

 Score =  123 bits (62), Expect = 6e-25
 Identities = 149/178 (83%)
 Strand = Plus / Minus

                                                                        
Query: 313  cccgctcgatctcttctagggatcgccccttggtctcgaccacattgccggctatgtaca 372
            ||||||| |||||||| || || |||||||||||||| |||||||| || |||||||| |
Sbjct: 1609 cccgctcaatctcttccagagaacgccccttggtctcaaccacatttccagctatgtaga 1550

                                                                        
Query: 373  ggaccgcgagagcgcacacggacgcgaaacccaagtacacggtgctgatcccaaacttgt 432
              || || |||||||| || || || || ||||| ||||| |||||||| || || ||||
Sbjct: 1549 caacagcaagagcgcaaacagatgcaaatcccaaatacacagtgctgattccgaatttgt 1490

                                                                      
Query: 433  tgacgacgctcaggaagtacagtccgatgaagaagttggatacccagtgcatgcccag 490
            |||||||||||| |||||| || || || |||||||| || |||||||||||||||||
Sbjct: 1489 tgacgacgctcaagaagtagaggccaataaagaagttcgaaacccagtgcatgcccag 1432
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>dbj|AK065247.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J01, full
            insert sequence
          Length = 1982

 Score =  123 bits (62), Expect = 6e-25
 Identities = 149/178 (83%)
 Strand = Plus / Minus

                                                                        
Query: 313  cccgctcgatctcttctagggatcgccccttggtctcgaccacattgccggctatgtaca 372
            ||||||| |||||||| || || |||||||||||||| |||||||| || |||||||| |
Sbjct: 1609 cccgctcaatctcttccagagaacgccccttggtctcaaccacatttccagctatgtaga 1550

                                                                        
Query: 373  ggaccgcgagagcgcacacggacgcgaaacccaagtacacggtgctgatcccaaacttgt 432
              || || |||||||| || || || || ||||| ||||| |||||||| || || ||||
Sbjct: 1549 caacagcaagagcgcaaacagatgcaaatcccaaatacacagtgctgattccgaatttgt 1490

                                                                      
Query: 433  tgacgacgctcaggaagtacagtccgatgaagaagttggatacccagtgcatgcccag 490
            |||||||||||| |||||| || || || |||||||| || |||||||||||||||||
Sbjct: 1489 tgacgacgctcaagaagtagaggccaataaagaagttcgaaacccagtgcatgcccag 1432
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>gb|AY112449.1| Zea mays CL1214_1 mRNA sequence
          Length = 1905

 Score =  111 bits (56), Expect = 2e-21
 Identities = 138/167 (82%)
 Strand = Plus / Minus

                                                                        
Query: 321  atctcttctagggatcgccccttggtctcgaccacattgccggctatgtacaggaccgcg 380
            |||||||| || |||| ||||||||||||||||||||| || ||||||||||| || || 
Sbjct: 1602 atctcttcaagtgatctccccttggtctcgaccacattcccagctatgtacagaactgca 1543

                                                                        
Query: 381  agagcgcacacggacgcgaaacccaagtacacggtgctgatcccaaacttgttgacgacg 440
            || || || || || || || ||||  |||||| ||||||||||||||||| | ||||| 
Sbjct: 1542 agggcacatactgatgcaaatcccagatacacgttgctgatcccaaacttgctcacgaca 1483

                                                           
Query: 441  ctcaggaagtacagtccgatgaagaagttggatacccagtgcatgcc 487
            |||||||||||||| || |||     ||| |||||||||||||||||
Sbjct: 1482 ctcaggaagtacaggccaatgnnnnngttagatacccagtgcatgcc 1436
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 130/157 (82%)
 Strand = Plus / Minus

                                                                           
Query: 313     cccgctcgatctcttctagggatcgccccttggtctcgaccacattgccggctatgtaca 372
               ||||||| |||||||| || || |||||||||||||| |||||||| || |||||||| |
Sbjct: 1847731 cccgctcaatctcttccagagaacgccccttggtctcaaccacatttccagctatgtaga 1847672

                                                                           
Query: 373     ggaccgcgagagcgcacacggacgcgaaacccaagtacacggtgctgatcccaaacttgt 432
                 || || |||||||| || || || || ||||| ||||| |||||||| || || ||||
Sbjct: 1847671 caacagcaagagcgcaaacagatgcaaatcccaaatacacagtgctgattccgaatttgt 1847612

                                                    
Query: 433     tgacgacgctcaggaagtacagtccgatgaagaagtt 469
               |||||||||||| |||||| || || || ||||||||
Sbjct: 1847611 tgacgacgctcaagaagtagaggccaataaagaagtt 1847575
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>dbj|AP003214.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0083M16
          Length = 179428

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 130/157 (82%)
 Strand = Plus / Minus

                                                                         
Query: 313   cccgctcgatctcttctagggatcgccccttggtctcgaccacattgccggctatgtaca 372
             ||||||| |||||||| || || |||||||||||||| |||||||| || |||||||| |
Sbjct: 89113 cccgctcaatctcttccagagaacgccccttggtctcaaccacatttccagctatgtaga 89054

                                                                         
Query: 373   ggaccgcgagagcgcacacggacgcgaaacccaagtacacggtgctgatcccaaacttgt 432
               || || |||||||| || || || || ||||| ||||| |||||||| || || ||||
Sbjct: 89053 caacagcaagagcgcaaacagatgcaaatcccaaatacacagtgctgattccgaatttgt 88994

                                                  
Query: 433   tgacgacgctcaggaagtacagtccgatgaagaagtt 469
             |||||||||||| |||||| || || || ||||||||
Sbjct: 88993 tgacgacgctcaagaagtagaggccaataaagaagtt 88957
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>gb|AY608701.1| Vitis vinifera plastid hexose transporter mRNA, complete cds; nuclear
            gene for plastid product
          Length = 2044

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 402  cccaagtacacggtgctgatcccaaacttgttgacgacgctcaggaagta 451
            |||||||| || ||||||||||| |||||||| || ||||||| ||||||
Sbjct: 1583 cccaagtaaactgtgctgatcccgaacttgtttacaacgctcaagaagta 1534
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>emb|CR381641.12| Zebrafish DNA sequence from clone DKEY-189N10 in linkage group 7,
             complete sequence
          Length = 168455

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 68    acaacacagcagctctttgatt 89
             ||||||||||||||||||||||
Sbjct: 31032 acaacacagcagctctttgatt 31053
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>gb|AC167243.3| Mus musculus BAC clone RP24-144E2 from chromosome 9, complete sequence
          Length = 193364

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   ctggcagacacagcaaaccc 140
             ||||||||||||||||||||
Sbjct: 69228 ctggcagacacagcaaaccc 69247
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>gb|BC100141.1| Rattus norvegicus HLA-B-associated transcript 3, transcript variant
            1, mRNA (cDNA clone MGC:114288 IMAGE:7315623), complete
            cds
          Length = 3651

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 211  cagaggcagcatccccaggt 230
            ||||||||||||||||||||
Sbjct: 1284 cagaggcagcatccccaggt 1303
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>ref|NM_182844.1| Rattus norvegicus myosin VIIA and Rab interacting protein (Myrip),
           mRNA
          Length = 2571

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 ctggcagacacagcaaaccc 140
           ||||||||||||||||||||
Sbjct: 324 ctggcagacacagcaaaccc 305
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>gb|AC137848.31| Mus musculus chromosome 9, clone RP24-118I23, complete sequence
          Length = 190317

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    ctggcagacacagcaaaccc 140
              ||||||||||||||||||||
Sbjct: 101303 ctggcagacacagcaaaccc 101284
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>ref|NM_001033968.1| Rattus norvegicus HLA-B-associated transcript 3 (Bat3), transcript
            variant 1, mRNA
          Length = 3651

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 211  cagaggcagcatccccaggt 230
            ||||||||||||||||||||
Sbjct: 1284 cagaggcagcatccccaggt 1303
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>ref|NM_053609.2| Rattus norvegicus HLA-B-associated transcript 3 (Bat3), transcript
            variant 2, mRNA
          Length = 3659

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 211  cagaggcagcatccccaggt 230
            ||||||||||||||||||||
Sbjct: 1442 cagaggcagcatccccaggt 1461
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>gb|AC102661.7| Mus musculus chromosome 3, clone RP23-114K16, complete sequence
          Length = 176493

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 64   agcaacaacacagcagctct 83
            ||||||||||||||||||||
Sbjct: 981  agcaacaacacagcagctct 1000
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>gb|AC165242.6| Mus musculus chromosome 3, clone RP24-98F15, complete sequence
          Length = 185876

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    agcaacaacacagcagctct 83
             ||||||||||||||||||||
Sbjct: 53538 agcaacaacacagcagctct 53519
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>ref|XM_001001862.1| PREDICTED: Mus musculus myosin VIIA and Rab interacting protein,
           transcript variant 1 (Myrip), mRNA
          Length = 3395

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 ctggcagacacagcaaaccc 140
           ||||||||||||||||||||
Sbjct: 485 ctggcagacacagcaaaccc 466
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>ref|XM_001001869.1| PREDICTED: Mus musculus myosin VIIA and Rab interacting protein,
           transcript variant 2 (Myrip), mRNA
          Length = 3421

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 ctggcagacacagcaaaccc 140
           ||||||||||||||||||||
Sbjct: 485 ctggcagacacagcaaaccc 466
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>emb|AJ508935.1|PFR508935 Propionibacterium freudenreichii subsp. shermanii eno1 gene for
           enolase 1
          Length = 1290

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 343 tggtctcgaccacattgccg 362
           ||||||||||||||||||||
Sbjct: 223 tggtctcgaccacattgccg 204
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>gb|AY294063.1| Pinus monticola putative NBS-LRR protein GI5033 (RGA) gene, partial
           cds
          Length = 516

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 85  tgattctgagatgtgatgag 104
           ||||||||||||||||||||
Sbjct: 338 tgattctgagatgtgatgag 319
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>gb|AY331984.1| Rattus norvegicus myosin VIIA and Rab interacting protein (Myrip)
           mRNA, complete cds
          Length = 2571

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 ctggcagacacagcaaaccc 140
           ||||||||||||||||||||
Sbjct: 324 ctggcagacacagcaaaccc 305
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>emb|BX883045.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 4/11
          Length = 346406

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 211    cagaggcagcatccccaggt 230
              ||||||||||||||||||||
Sbjct: 339245 cagaggcagcatccccaggt 339264
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>gb|BC085713.1| Rattus norvegicus phosphate cytidylyltransferase 1, choline, alpha
            isoform, mRNA (cDNA clone MGC:93248 IMAGE:7127059),
            complete cds
          Length = 4343

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 51   gtccacctccagaagcaaca 70
            ||||||||||||||||||||
Sbjct: 2357 gtccacctccagaagcaaca 2376
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>gb|AY099470.1| Mus musculus exophilin 8 mRNA, complete cds
          Length = 2670

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 ctggcagacacagcaaaccc 140
           ||||||||||||||||||||
Sbjct: 360 ctggcagacacagcaaaccc 341
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>gb|AF396688.1| Mus musculus rab effector MYRIP (Myrip) mRNA, complete cds
          Length = 2632

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 ctggcagacacagcaaaccc 140
           ||||||||||||||||||||
Sbjct: 347 ctggcagacacagcaaaccc 328
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>dbj|AK148358.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched
           library, clone:G370108P05 product:myosin VIIA and Rab
           interacting protein, full insert sequence
          Length = 3862

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 ctggcagacacagcaaaccc 140
           ||||||||||||||||||||
Sbjct: 603 ctggcagacacagcaaaccc 584
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>dbj|AK038988.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length
           enriched library, clone:A230081N12 product:hypothetical
           FYVE/PHD zinc finger structure containing protein, full
           insert sequence
          Length = 3512

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 ctggcagacacagcaaaccc 140
           ||||||||||||||||||||
Sbjct: 439 ctggcagacacagcaaaccc 420
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>dbj|AK083225.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length
           enriched library, clone:C630029J04 product:hypothetical
           Cysteine-rich region containing protein, full insert
           sequence
          Length = 4763

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 ctggcagacacagcaaaccc 140
           ||||||||||||||||||||
Sbjct: 486 ctggcagacacagcaaaccc 467
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>gb|AY585926.1| Paxillus involutus strain ATCC 200175 CipC1 protein (cipC1) mRNA,
           complete cds
          Length = 435

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 335 tcgccccttggtctcgacca 354
           ||||||||||||||||||||
Sbjct: 284 tcgccccttggtctcgacca 265
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>gb|AC147283.3| Pan troglodytes BAC clone RP43-94K2 from chromosome 7, complete sequence
          Length = 171112

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 84     ttgattctgagatgtgatgagaag 107
              |||||||||||||||| |||||||
Sbjct: 131739 ttgattctgagatgtgttgagaag 131716
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>gb|AC083861.2|AC083861 Homo sapiens chromosome 7 clone RP11-164E6, complete sequence
          Length = 147288

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 84    ttgattctgagatgtgatgagaag 107
             |||||||||||||||| |||||||
Sbjct: 11520 ttgattctgagatgtgttgagaag 11543
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>gb|AC007444.1|AC007444 Homo sapiens clone RP11-340F1 from 7p14-15, complete sequence
          Length = 156940

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 84     ttgattctgagatgtgatgagaag 107
              |||||||||||||||| |||||||
Sbjct: 116498 ttgattctgagatgtgttgagaag 116521
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>dbj|AB083782.1| Mus musculus slac2-c mRNA for Slp homologue lacking C2 domains-c,
           complete cds
          Length = 2571

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 ctggcagacacagcaaaccc 140
           ||||||||||||||||||||
Sbjct: 324 ctggcagacacagcaaaccc 305
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>ref|NM_144557.2| Mus musculus myosin VIIA and Rab interacting protein (Myrip), mRNA
          Length = 4763

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 ctggcagacacagcaaaccc 140
           ||||||||||||||||||||
Sbjct: 486 ctggcagacacagcaaaccc 467
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>dbj|AB018791.1| Rattus norvegicus mRNA for BAT3, complete cds
          Length = 3617

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 211  cagaggcagcatccccaggt 230
            ||||||||||||||||||||
Sbjct: 1398 cagaggcagcatccccaggt 1417


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,120,113
Number of Sequences: 3902068
Number of extensions: 3120113
Number of successful extensions: 53517
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53459
Number of HSP's gapped (non-prelim): 55
length of query: 492
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 470
effective length of database: 17,147,199,772
effective search space: 8059183892840
effective search space used: 8059183892840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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