ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd22c17 |
|---|---|
| Clone Library Name | barley_pub |
>ANR11_HUMAN (Q6UB99) Ankyrin repeat domain-containing protein 11 (Ankyrin| repeat-containing cofactor 1) Length = 2664 Score = 33.1 bits (74), Expect = 0.17 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Frame = -2 Query: 367 HPEDALQITEQPDEKSAEIKN--RFKLKLNFNGKDGQSLWKRAAKDEKRTSPNDXKKSPE 194 HP + + PD++ E R+K K + K +S+ ++ KD++ KK + Sbjct: 1005 HPAREKEKKDGPDKERKEKTKPERYKEKSSDKDKSEKSILEKCQKDKEFDKCFKEKKDTK 1064 Query: 193 EKNSNFFSNLRERKAALFSKKNAK 122 EK+ + +ERKA+L K K Sbjct: 1065 EKHKDTHGKDKERKASLDQGKEKK 1088
>GBP_PLAFG (P02895) Glycophorin-binding protein (GBP-130)| Length = 774 Score = 31.6 bits (70), Expect = 0.48 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%) Frame = -2 Query: 349 QITEQPDEKSAEIKNRFKLKLNF----NGKDGQSLWKRAAKDEKRTSPNDXKKSPEEKNS 182 Q E EK K K ++N N K+G+++ K K++K+ + K E K++ Sbjct: 131 QKVESDSEKQKRTKKVVKKQINIGDTENQKEGKNVKKVIKKEKKK---EESGKPEENKHA 187 Query: 181 NFFSNLRERKAALFSKK 131 N S +E KA+ S+K Sbjct: 188 NEASKKKEPKASKVSQK 204
>GBP_PLAF7 (Q8I6U8) Glycophorin-binding protein (GBP-130)| Length = 824 Score = 31.2 bits (69), Expect = 0.63 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%) Frame = -2 Query: 349 QITEQPDEKSAEIKNRFKLKLNF----NGKDGQSLWKRAAKDEKRTSPNDXKKSPEEKNS 182 Q E EK K K ++N N K+G+++ K K++K+ + K E K++ Sbjct: 131 QKVESDSEKQKRTKKVVKKQINIGDTENQKEGKNVKKVIKKEKKK---EESGKPEENKHA 187 Query: 181 NFFSNLRERKAALFSKK 131 N S +E KA+ S+K Sbjct: 188 NEASKKQEPKASKVSQK 204
>SPAG1_RAT (Q5U2X2) Sperm-associated antigen 1 (Infertility-related sperm| protein Spag-1) (HSD-3.8) Length = 893 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Frame = -1 Query: 299 QAQAELQRQRWSVSVEACSKG*E---ENIPK*RXKITGRKELEFFLE 168 +AQAE++ QRWS ++E C K E NI + T K FLE Sbjct: 252 RAQAEIKLQRWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLE 298
>SWI4_YEAST (P25302) Regulatory protein SWI4 (Cell-cycle box factor, chain| SWI4) (ART1 protein) Length = 1093 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = -2 Query: 262 SLWKRAAKDEKRTSPNDXKKSPEEKNSNFFSNLRERKAALFSKKNA 125 S+ ++ + K TSP+ K+P +KNS+ ++ A KKNA Sbjct: 153 SILRKTSPGTKITSPSSYNKTPRKKNSSSSTSATTTAANKKGKKNA 198
>SPAG1_MOUSE (Q80ZX8) Sperm-associated antigen 1 (Infertility-related sperm| protein Spag-1) (TPR-containing protein involved in spermatogenesis) (TPIS) Length = 901 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = -1 Query: 299 QAQAELQRQRWSVSVEACSKG*E 231 +AQAE++ QRWS ++E C K E Sbjct: 252 RAQAEIKLQRWSSALEDCEKALE 274
>LIN1_SCHPO (O94693) Hypothetical Lin1-like protein| Length = 408 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = -2 Query: 289 LNFNGKDGQS--LWKRAAKDEKRTSPNDXKKSPEEKNSNFFSN 167 LN K+GQS ++ ++DEKRT PND +K +F N Sbjct: 54 LNKEKKEGQSEDMFSDTSEDEKRTLPND----EAQKRRDFIEN 92
>IF2_CHLTE (Q8KFT1) Translation initiation factor IF-2| Length = 914 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/47 (29%), Positives = 26/47 (55%) Frame = -2 Query: 328 EKSAEIKNRFKLKLNFNGKDGQSLWKRAAKDEKRTSPNDXKKSPEEK 188 E + E+K F+ L+ + +DG++ K+AAK + KK ++K Sbjct: 228 ESAVELKGEFENVLSVDSEDGEAAKKKAAKPDGGEDVGVKKKKGKKK 274
>HMGB2_CHICK (P26584) High mobility group protein B2 (High mobility group| protein 2) (HMG-2) Length = 206 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/42 (26%), Positives = 23/42 (54%) Frame = -3 Query: 258 CGSVQQRMRREHPQMTXKNHRKKRTRIFSRTFARGRPPYFQK 133 C + +++ +HP ++ + KK ++S A+ + PY QK Sbjct: 105 CSEHRPKIKNDHPGLSIGDTAKKLGEMWSEQLAKDKQPYEQK 146
>HMGB2_RAT (P52925) High mobility group protein B2 (High mobility group| protein 2) (HMG-2) Length = 209 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/42 (28%), Positives = 23/42 (54%) Frame = -3 Query: 258 CGSVQQRMRREHPQMTXKNHRKKRTRIFSRTFARGRPPYFQK 133 C + +++ EHP ++ + KK ++S A+ + PY QK Sbjct: 105 CSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQK 146
>HMGB2_PIG (P17741) High mobility group protein B2 (High mobility group| protein 2) (HMG-2) Length = 209 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/42 (28%), Positives = 23/42 (54%) Frame = -3 Query: 258 CGSVQQRMRREHPQMTXKNHRKKRTRIFSRTFARGRPPYFQK 133 C + +++ EHP ++ + KK ++S A+ + PY QK Sbjct: 105 CSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQK 146
>APRR3_ARATH (Q9LVG4) Two-component response regulator-like APRR3| (Pseudo-response regulator 3) Length = 495 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Frame = -2 Query: 280 NGKDGQSLWKRAAKDEKRTSP-NDXKKSPEEKNS 182 NG QS W + A D K TSP N +P +K + Sbjct: 241 NGSGTQSSWTKRASDTKSTSPSNQFPDAPNKKGT 274
>RS6E_SULAC (Q4JAI1) 30S ribosomal protein S6e| Length = 213 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/41 (34%), Positives = 25/41 (60%) Frame = -2 Query: 352 LQITEQPDEKSAEIKNRFKLKLNFNGKDGQSLWKRAAKDEK 230 L+IT+Q +K +IK FK++++ DG+ +W + EK Sbjct: 62 LEITKQEGDKKVKIKGHFKIEVDNTVPDGE-VWISKSMAEK 101
>HMGB2_HUMAN (P26583) High mobility group protein B2 (High mobility group| protein 2) (HMG-2) Length = 208 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/42 (28%), Positives = 23/42 (54%) Frame = -3 Query: 258 CGSVQQRMRREHPQMTXKNHRKKRTRIFSRTFARGRPPYFQK 133 C + +++ EHP ++ + KK ++S A+ + PY QK Sbjct: 105 CSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQK 146
>RAI1_MOUSE (Q61818) Retinoic acid-induced protein 1| Length = 1889 Score = 27.7 bits (60), Expect = 7.0 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 9/83 (10%) Frame = -1 Query: 308 KPVQAQAELQRQRWSVSVEACSK--------G*EENIPK*RXKITGRKELEFF-LEPSRE 156 +P Q Q Q+Q S + SK G + + + T R++ + L+P+ Sbjct: 1483 RPCQPQTRAQKQPGQASYSSYSKRKRLSRGRGKTAHASPCKGRATRRRQQQVLPLDPAEP 1542 Query: 155 EGRLIFKKECKSFRVAVATPTIS 87 E RL + CK R TP S Sbjct: 1543 EIRLKYISSCKRLRADSRTPAFS 1565
>MNN4_YEAST (P36044) Protein MNN4| Length = 1178 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/78 (23%), Positives = 36/78 (46%) Frame = -2 Query: 361 EDALQITEQPDEKSAEIKNRFKLKLNFNGKDGQSLWKRAAKDEKRTSPNDXKKSPEEKNS 182 E+ + E+ ++K E + + K + K+ K+ +EK+ + + KK EEKN Sbjct: 1087 EEEKKKQEEEEKKKKEEEEKKKQEEGEKMKNEDEENKKNEDEEKKKNEEEEKKKQEEKNK 1146 Query: 181 NFFSNLRERKAALFSKKN 128 ++++ KKN Sbjct: 1147 KNEDEEKKKQEEEEKKKN 1164
>PRM2_RATFU (Q91VE1) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 105 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/51 (27%), Positives = 24/51 (47%) Frame = -3 Query: 246 QQRMRREHPQMTXKNHRKKRTRIFSRTFARGRPPYFQKRMQKLQSCRRHPH 94 ++R+ R H + R++ + R RG ++R K + CRRH H Sbjct: 55 RKRLHRIHKRRRSCRRRRRHSCCHRRRHRRGCRRSRRRRRCKCRKCRRHCH 105
>INT1_CANAL (P53705) Integrin alpha chain-like protein (Alpha-INT1)| Length = 1664 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/61 (29%), Positives = 24/61 (39%) Frame = -2 Query: 337 QPDEKSAEIKNRFKLKLNFNGKDGQSLWKRAAKDEKRTSPNDXKKSPEEKNSNFFSNLRE 158 QP SA I N LNF + + + + TS D +K EEK F + Sbjct: 20 QPQSSSASIFNSPTKPLNFPRTNSKPSLDPNSSSDTYTSEQDQEKGKEEKKDTAFQTSFD 79 Query: 157 R 155 R Sbjct: 80 R 80
>GIDB_MYCMO (Q6KH77) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 225 Score = 27.7 bits (60), Expect = 7.0 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Frame = -2 Query: 370 THPEDALQITEQPD-----EKSAEIKNRFKLKLNFNGKDGQSLWKRAAKDEKRTSPNDXK 206 T+ E ++ P+ E+ + + K+N G +G++LWK + S + Sbjct: 21 TNSEICKELVSNPEKFNKLEQFVSLVEEWNKKINLTGFEGENLWKEGINE----SFFCFE 76 Query: 205 KSPEEKNSNFFSN 167 K E KN N F N Sbjct: 77 KILETKNLNDFEN 89
>HMG1X_HUMAN (Q9UGV6) High mobility group protein 1-like 10 (HMG-1L10)| Length = 211 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/48 (27%), Positives = 28/48 (58%) Frame = -3 Query: 258 CGSVQQRMRREHPQMTXKNHRKKRTRIFSRTFARGRPPYFQKRMQKLQ 115 C + + +++ EHP ++ + KK +++ T A + PY +K+ KL+ Sbjct: 106 CSAYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY-EKKAAKLK 152
>HMGB2_MOUSE (P30681) High mobility group protein B2 (High mobility group| protein 2) (HMG-2) Length = 209 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/42 (28%), Positives = 23/42 (54%) Frame = -3 Query: 258 CGSVQQRMRREHPQMTXKNHRKKRTRIFSRTFARGRPPYFQK 133 C + +++ EHP ++ + KK ++S A+ + PY QK Sbjct: 105 CSENRPKIKIEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQK 146
>GPA10_CAEEL (Q9BIG4) Guanine nucleotide-binding protein alpha-10 subunit| Length = 356 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -3 Query: 222 PQMTXKNHRKKRTRIFSRTFARGRPPYFQKRMQKLQSC 109 P+ N + T+ F R F G P F+KRM ++C Sbjct: 291 PKFEGANTVSEGTKFFRRQFREGIHPDFKKRMYTHETC 328
>HMGB1_RAT (P63159) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) (Amphoterin) (Heparin-binding protein p30) Length = 214 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/48 (27%), Positives = 27/48 (56%) Frame = -3 Query: 258 CGSVQQRMRREHPQMTXKNHRKKRTRIFSRTFARGRPPYFQKRMQKLQ 115 C + +++ EHP ++ + KK +++ T A + PY +K+ KL+ Sbjct: 105 CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY-EKKAAKLK 151
>HMGB1_MOUSE (P63158) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) Length = 214 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/48 (27%), Positives = 27/48 (56%) Frame = -3 Query: 258 CGSVQQRMRREHPQMTXKNHRKKRTRIFSRTFARGRPPYFQKRMQKLQ 115 C + +++ EHP ++ + KK +++ T A + PY +K+ KL+ Sbjct: 105 CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY-EKKAAKLK 151
>HMGB1_MACFA (Q4R844) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) Length = 214 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/48 (27%), Positives = 27/48 (56%) Frame = -3 Query: 258 CGSVQQRMRREHPQMTXKNHRKKRTRIFSRTFARGRPPYFQKRMQKLQ 115 C + +++ EHP ++ + KK +++ T A + PY +K+ KL+ Sbjct: 105 CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY-EKKAAKLK 151
>HMGB1_HUMAN (P09429) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) Length = 214 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/48 (27%), Positives = 27/48 (56%) Frame = -3 Query: 258 CGSVQQRMRREHPQMTXKNHRKKRTRIFSRTFARGRPPYFQKRMQKLQ 115 C + +++ EHP ++ + KK +++ T A + PY +K+ KL+ Sbjct: 105 CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY-EKKAAKLK 151
>HMGB1_CANFA (Q6YKA4) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) Length = 214 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/48 (27%), Positives = 27/48 (56%) Frame = -3 Query: 258 CGSVQQRMRREHPQMTXKNHRKKRTRIFSRTFARGRPPYFQKRMQKLQ 115 C + +++ EHP ++ + KK +++ T A + PY +K+ KL+ Sbjct: 105 CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY-EKKAAKLK 151
>HMGB1_BOVIN (P10103) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) Length = 214 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/48 (27%), Positives = 27/48 (56%) Frame = -3 Query: 258 CGSVQQRMRREHPQMTXKNHRKKRTRIFSRTFARGRPPYFQKRMQKLQ 115 C + +++ EHP ++ + KK +++ T A + PY +K+ KL+ Sbjct: 105 CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY-EKKAAKLK 151
>HMGB1_CRIGR (P07156) High mobility group protein B1 (High mobility group| protein 1) (HMG-1) (Fragment) Length = 180 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/48 (27%), Positives = 27/48 (56%) Frame = -3 Query: 258 CGSVQQRMRREHPQMTXKNHRKKRTRIFSRTFARGRPPYFQKRMQKLQ 115 C + +++ EHP ++ + KK +++ T A + PY +K+ KL+ Sbjct: 71 CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPY-EKKAAKLK 117
>GNL3_BRARE (Q6DRP2) Guanine nucleotide-binding protein-like 3| (Nucleostemin-like protein) Length = 561 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/80 (23%), Positives = 36/80 (45%) Frame = -2 Query: 361 EDALQITEQPDEKSAEIKNRFKLKLNFNGKDGQSLWKRAAKDEKRTSPNDXKKSPEEKNS 182 E+ L+ EQ ++ +K + K+ ++AAK +K K P K + Sbjct: 59 EEVLREAEQRKQELETLKEQNKIVKQ---------QEKAAKRKKEKDAASSVKEPAAKKA 109 Query: 181 NFFSNLRERKAALFSKKNAK 122 + ++E +AA+ K+AK Sbjct: 110 KKAAKIKEARAAIVKVKSAK 129
>SERC_BACCR (Q81BC0) Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT)| Length = 360 Score = 27.3 bits (59), Expect = 9.1 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Frame = -2 Query: 346 ITEQPDEKSAEIKNRFKLKLNFNGKDGQSLWKRAAKDEKRTSPNDXKKSP-EEKNSNFFS 170 + EQ + E +NR K L +N D L+ R+ N +P EE NS F Sbjct: 254 LKEQGGVSAIEEQNRMKSSLLYNFLDESKLFTSPVDPTYRSLMNIPFTTPSEELNSEFLQ 313 Query: 169 NLRER 155 +ER Sbjct: 314 KAKER 318
>SERC_BACC1 (Q734W9) Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT)| Length = 360 Score = 27.3 bits (59), Expect = 9.1 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Frame = -2 Query: 346 ITEQPDEKSAEIKNRFKLKLNFNGKDGQSLWKRAAKDEKRTSPNDXKKSP-EEKNSNFFS 170 + EQ + E +NR K L +N D L+ R+ N +P EE NS F Sbjct: 254 LKEQGGVSAIEEQNRMKSSLLYNFLDESKLFTSPVDPTYRSLMNIPFTTPSEELNSEFLQ 313 Query: 169 NLRER 155 +ER Sbjct: 314 KAKER 318 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,054,178 Number of Sequences: 219361 Number of extensions: 656547 Number of successful extensions: 2145 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 2070 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2142 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
