ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1FUS_HRSVL (P12568) Fusion glycoprotein F0 precursor [Contains: F... 28 8.5
2FUS_HRSVA (P03420) Fusion glycoprotein F0 precursor (Protein F) ... 28 8.5
3FUS_HRSV1 (P13843) Fusion glycoprotein F0 precursor [Contains: F... 28 8.5 
>FUS_HRSVL (P12568) Fusion glycoprotein F0 precursor [Contains: Fusion|
           glycoprotein F2; Fusion glycoprotein F1]
          Length = 574

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 130 LSCHVTCYNKTKLRLSNKGRG 68
           L   V+CY KTK   SNK RG
Sbjct: 410 LGAIVSCYGKTKCTASNKNRG 430
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>FUS_HRSVA (P03420) Fusion glycoprotein F0 precursor (Protein F) [Contains:|
           Fusion glycoprotein F2; Fusion glycoprotein F1]
          Length = 574

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 130 LSCHVTCYNKTKLRLSNKGRG 68
           L   V+CY KTK   SNK RG
Sbjct: 410 LGAIVSCYGKTKCTASNKNRG 430
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>FUS_HRSV1 (P13843) Fusion glycoprotein F0 precursor [Contains: Fusion|
           glycoprotein F2; Fusion glycoprotein F1]
          Length = 574

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 130 LSCHVTCYNKTKLRLSNKGRG 68
           L   V+CY KTK   SNK RG
Sbjct: 410 LGAIVSCYGKTKCTASNKNRG 430


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,357,981
Number of Sequences: 219361
Number of extensions: 531982
Number of successful extensions: 1306
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 80,573,946
effective HSP length: 47
effective length of database: 70,263,979
effective search space used: 1686335496
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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