ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22c07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4,... 86 2e-13
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
3emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromosome 4,... 86 2e-13
4emb|X96761.1|SSSULPTRP S.stapfianus mRNA for sulphate transporte... 84 6e-13
5ref|XM_474146.1| Oryza sativa (japonica cultivar-group), predic... 82 2e-12
6dbj|AK104831.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
7dbj|AK072809.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
8gb|AY105934.1| Zea mays PCO089998 mRNA sequence 60 9e-06
9gb|AC011301.9| Homo sapiens BAC clone RP11-299I20 from 2, comple... 44 0.53
10dbj|AB009050.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.53
11gb|AC114574.8| Mus musculus chromosome 6, clone RP23-151F20, com... 42 2.1
12emb|AL121968.10|HSJ196B13 Human DNA sequence from clone RP1-196B... 42 2.1
13gb|AC084324.8| Mus musculus Strain C57BL6/J chromosome 2 BAC, RP... 42 2.1
14gb|AC007003.5| Homo sapiens BAC clone RP11-506L7 from 7, complet... 42 2.1
15emb|AL928623.5| Mouse DNA sequence from clone RP23-276I21 on chr... 42 2.1
16gb|AC164105.4| Mus musculus BAC clone RP23-433B2 from chromosome... 40 8.3
17gb|AC129553.10| Mus musculus chromosome 5, clone RP24-351J24, co... 40 8.3
18gb|AC084310.16| Mus musculus chromosome 1, clone RP23-10C10, com... 40 8.3
19emb|CT010524.6| Mouse DNA sequence from clone RP23-341L7 on chro... 40 8.3
20emb|AJ292770.1|ZMA292770 Zea mays mRNA for putative fatty acid l... 40 8.3
21emb|AL136146.10| Human DNA sequence from clone RP5-916O11 on chr... 40 8.3
22emb|AL096867.15|HSJ365O19 Human DNA sequence from clone RP3-365O... 40 8.3
23gb|AC164614.3| Mus musculus BAC clone RP23-337L12 from chromosom... 40 8.3
24emb|AL844847.6| Zebrafish DNA sequence from clone DKEY-13A21 in ... 40 8.3
25emb|AL645752.9| Mouse DNA sequence from clone RP23-244K22 on chr... 40 8.3
26gb|AC104070.3| Homo sapiens BAC clone RP11-279K24 from 4, comple... 40 8.3
27gb|AC080043.5| Homo sapiens chromosome , clone RP11-45M9, comple... 40 8.3
28gb|AC023566.11| Homo sapiens chromosome 8, clone RP11-660D5, com... 40 8.3
29gb|AC008705.6| Homo sapiens chromosome 5 clone CTB-77H17, comple... 40 8.3
30dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome 40 8.3
31dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 8.3
32gb|AC113186.6| Homo sapiens chromosome 8, clone RP11-941L11, com... 40 8.3
33gb|AC154609.2| Mus musculus BAC clone RP23-334N13 from 16, compl... 40 8.3
34emb|BX248511.4| Zebrafish DNA sequence from clone CH211-243G18 i... 40 8.3
35gb|AY109713.2| Zea mays CL1191_1 mRNA sequence 40 8.3
36emb|CR933820.6| Zebrafish DNA sequence from clone DKEY-183J2 in ... 40 8.3
37gb|AC127569.4| Mus musculus BAC clone RP24-216E20 from 9, comple... 40 8.3
38gb|AC090692.9| Homo sapiens chromosome 11, clone RP11-698N11, co... 40 8.3
39dbj|AP002075.3| Homo sapiens genomic DNA, chromosome 4q22-q24, c... 40 8.3 
>emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060D06,
             complete sequence
          Length = 151506

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                         
Query: 522   gcagcttgtacttgtgaatccaaccggagaggttatggagaaaatacaacgagcgaacga 581
             ||||||| |||||||||||||||| |||||||| |||||||| |||||||||||||| ||
Sbjct: 21624 gcagcttatacttgtgaatccaactggagaggtcatggagaagatacaacgagcgaatga 21565

                
Query: 582   tgc 584
             |||
Sbjct: 21564 tgc 21562



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                  
Query: 421   cagagcatgagatggccgaagttcttctggatctcagcgtgtgctcccttggc 473
             ||||| |||| |||||| ||| | |||||| | ||||| ||||||||||||||
Sbjct: 23462 cagagtatgaaatggccaaagcttttctgggtttcagcttgtgctcccttggc 23410
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                            
Query: 522      gcagcttgtacttgtgaatccaaccggagaggttatggagaaaatacaacgagcgaacga 581
                ||||||| |||||||||||||||| |||||||| |||||||| |||||||||||||| ||
Sbjct: 33249363 gcagcttatacttgtgaatccaactggagaggtcatggagaagatacaacgagcgaatga 33249304

                   
Query: 582      tgc 584
                |||
Sbjct: 33249303 tgc 33249301



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                     
Query: 421      cagagcatgagatggccgaagttcttctggatctcagcgtgtgctcccttggc 473
                ||||| |||| |||||| ||| | |||||| | ||||| ||||||||||||||
Sbjct: 33251201 cagagtatgaaatggccaaagcttttctgggtttcagcttgtgctcccttggc 33251149
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>emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02,
              complete sequence
          Length = 165745

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 58/63 (92%)
 Strand = Plus / Minus

                                                                          
Query: 522    gcagcttgtacttgtgaatccaaccggagaggttatggagaaaatacaacgagcgaacga 581
              ||||||| |||||||||||||||| |||||||| |||||||| |||||||||||||| ||
Sbjct: 132012 gcagcttatacttgtgaatccaactggagaggtcatggagaagatacaacgagcgaatga 131953

                 
Query: 582    tgc 584
              |||
Sbjct: 131952 tgc 131950



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                   
Query: 421    cagagcatgagatggccgaagttcttctggatctcagcgtgtgctcccttggc 473
              ||||| |||| |||||| ||| | |||||| | ||||| ||||||||||||||
Sbjct: 133850 cagagtatgaaatggccaaagcttttctgggtttcagcttgtgctcccttggc 133798
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>emb|X96761.1|SSSULPTRP S.stapfianus mRNA for sulphate transporter protein
          Length = 2515

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 70/78 (89%), Gaps = 1/78 (1%)
 Strand = Plus / Plus

                                                                        
Query: 524  agcttgtacttgtgaatccaaccggaga-ggttatggagaaaatacaacgagcgaacgat 582
            |||||||||||||||||||||||||||| ||| ||||| |||||||| |||| |||||| 
Sbjct: 1883 agcttgtacttgtgaatccaaccggagagggtcatggaaaaaatacagcgagtgaacgag 1942

                              
Query: 583  gcacacaatcatttcagg 600
            |||||||  |||||||||
Sbjct: 1943 gcacacaggcatttcagg 1960
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>ref|XM_474146.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1890

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                        
Query: 524  agcttgtacttgtgaatccaaccggagaggttatggagaaaatacaacgagcgaacgatg 583
            ||||| |||||||||||||||| |||||||| |||||||| |||||||||||||| ||||
Sbjct: 1739 agcttatacttgtgaatccaactggagaggtcatggagaagatacaacgagcgaatgatg 1798

             
Query: 584  c 584
            |
Sbjct: 1799 c 1799
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>dbj|AK104831.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-A04, full
            insert sequence
          Length = 2181

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                        
Query: 524  agcttgtacttgtgaatccaaccggagaggttatggagaaaatacaacgagcgaacgatg 583
            ||||| |||||||||||||||| |||||||| |||||||| |||||||||||||| ||||
Sbjct: 1909 agcttatacttgtgaatccaactggagaggtcatggagaagatacaacgagcgaatgatg 1968

             
Query: 584  c 584
            |
Sbjct: 1969 c 1969
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>dbj|AK072809.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141I19, full
            insert sequence
          Length = 2338

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                        
Query: 524  agcttgtacttgtgaatccaaccggagaggttatggagaaaatacaacgagcgaacgatg 583
            ||||| |||||||||||||||| |||||||| |||||||| |||||||||||||| ||||
Sbjct: 1915 agcttatacttgtgaatccaactggagaggtcatggagaagatacaacgagcgaatgatg 1974

             
Query: 584  c 584
            |
Sbjct: 1975 c 1975
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>gb|AY105934.1| Zea mays PCO089998 mRNA sequence
          Length = 2279

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                      
Query: 524  agcttgtacttgtgaatccaaccggagaggttatggagaaaatacaacgagcgaacga 581
            ||||||| ||||| |||||||| ||||| || ||||||||||||||||| || |||||
Sbjct: 1918 agcttgtgcttgtcaatccaactggagaagtcatggagaaaatacaacgtgcaaacga 1975
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>gb|AC011301.9| Homo sapiens BAC clone RP11-299I20 from 2, complete sequence
          Length = 166424

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 47    actgacctatttccaaatgaaa 68
             ||||||||||||||||||||||
Sbjct: 66333 actgacctatttccaaatgaaa 66312
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>dbj|AB009050.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDF20
          Length = 86699

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 166   ttccatttccagaacctaaaattaaa 191
             |||||||||||||| |||||||||||
Sbjct: 14680 ttccatttccagaaactaaaattaaa 14705
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>gb|AC114574.8| Mus musculus chromosome 6, clone RP23-151F20, complete sequence
          Length = 252723

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 585   acacaatcatttcaggcagga 605
             |||||||||||||||||||||
Sbjct: 55277 acacaatcatttcaggcagga 55297
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>emb|AL121968.10|HSJ196B13 Human DNA sequence from clone RP1-196B13 on chromosome 6q22.2-22.33
             Contains part of the TCBA1 gene for T-cell lymphoma
             breakpoint associated target 1, complete sequence
          Length = 124219

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 500   tcttccttttttctctccctt 520
             |||||||||||||||||||||
Sbjct: 49243 tcttccttttttctctccctt 49263
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>gb|AC084324.8| Mus musculus Strain C57BL6/J chromosome 2 BAC, RP23-96L7 Complete
              Sequence, complete sequence
          Length = 205893

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 159    gacagcgttccatttccagaaccta 183
              ||||| |||||||||||||||||||
Sbjct: 160206 gacagagttccatttccagaaccta 160230
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>gb|AC007003.5| Homo sapiens BAC clone RP11-506L7 from 7, complete sequence
          Length = 34087

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 500   tcttccttttttctctccctt 520
             |||||||||||||||||||||
Sbjct: 16988 tcttccttttttctctccctt 17008
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>emb|AL928623.5| Mouse DNA sequence from clone RP23-276I21 on chromosome 2, complete
             sequence
          Length = 184480

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 159   gacagcgttccatttccagaaccta 183
             ||||| |||||||||||||||||||
Sbjct: 45683 gacagagttccatttccagaaccta 45659
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>gb|AC164105.4| Mus musculus BAC clone RP23-433B2 from chromosome 9, complete sequence
          Length = 215089

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 500   tcttccttttttctctccct 519
             ||||||||||||||||||||
Sbjct: 93560 tcttccttttttctctccct 93579
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>gb|AC129553.10| Mus musculus chromosome 5, clone RP24-351J24, complete sequence
          Length = 152414

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   agacagcgttccatttccag 177
             ||||||||||||||||||||
Sbjct: 84895 agacagcgttccatttccag 84914
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>gb|AC084310.16| Mus musculus chromosome 1, clone RP23-10C10, complete sequence
          Length = 194800

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 403    tgcgtgcatgtgtatgttca 422
              ||||||||||||||||||||
Sbjct: 126578 tgcgtgcatgtgtatgttca 126597
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>emb|CT010524.6| Mouse DNA sequence from clone RP23-341L7 on chromosome 16, complete
              sequence
          Length = 233599

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      tctgtagtctgtacttgctg 24
              ||||||||||||||||||||
Sbjct: 217892 tctgtagtctgtacttgctg 217911
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>emb|AJ292770.1|ZMA292770 Zea mays mRNA for putative fatty acid longase (fae2 gene)
          Length = 2018

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 487 tccacgctgctcgtcttcct 506
           ||||||||||||||||||||
Sbjct: 403 tccacgctgctcgtcttcct 422
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>emb|AL136146.10| Human DNA sequence from clone RP5-916O11 on chromosome 11p12-13,
            complete sequence
          Length = 106073

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 336  ctcacttcattcttagctgt 355
            ||||||||||||||||||||
Sbjct: 5849 ctcacttcattcttagctgt 5868
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>emb|AL096867.15|HSJ365O19 Human DNA sequence from clone RP3-365O19 on chromosome 6q23.1-24.3
              Contains the 5' end of the GRM1 gene for metabotropic
              glutamate receptor 1, complete sequence
          Length = 156935

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 355    tttttccatgggtggttggt 374
              ||||||||||||||||||||
Sbjct: 132305 tttttccatgggtggttggt 132286
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>gb|AC164614.3| Mus musculus BAC clone RP23-337L12 from chromosome 9, complete sequence
          Length = 215002

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     tgctctgtagtctgtacttg 21
             ||||||||||||||||||||
Sbjct: 51640 tgctctgtagtctgtacttg 51659
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>emb|AL844847.6| Zebrafish DNA sequence from clone DKEY-13A21 in linkage group 11 Contains
              three novel genes, the opn1lw1 gene for opsin 1 (cone
              pigments), long-wave-sensitive, 1, a gene for novel protein
              similar to human and rodent member RAS oncogene family RAB7
              (RAB7), a gene for novel protein remotely similar to human
              host cell factor 1 (VP16-accessory protein) (HCFC1), the
              opn1sw2 gene for opsin 1 (cone pigments),
              short-wave-sensitive 1, a gene for novel protein similar to
              human and mouse CpG binding protein (CGBP), a gene for
              novel protein similar to vertebrate
              microphthalmia-associated transcription factor (MITF) and
              zebrafish transcription factor binding to IGHM enhancer 3a
              (tfe3a), a gene for novel protein similar to human and
              rodent catechol-O-methyltransferase (COMT), the flj10613l
              gene for hypothetical protein FLJ10613-like (H. sapiens), a
              gene for novel protein similar to human and mouse
              methyl-CpG binding domain protein 1 (MBD1), a gene for
              novel protein similar to zebrafish red-sensitive opsin
              (rdops), a gene for novel protein similar to mouse and
              human host cell factor C1 (VP16-accessory protein) (HCFC1),
              a gene for novel protein similar to human and rodent
              metabotropic glutamate receptors (GRM) and two CpG islands,
              complete sequence
          Length = 235174

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 39     ctttcagtactgacctattt 58
              ||||||||||||||||||||
Sbjct: 142011 ctttcagtactgacctattt 142030
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>emb|AL645752.9| Mouse DNA sequence from clone RP23-244K22 on chromosome 11 Contains the
             5' end of the Gabra1 gene for gamma-aminobutyric acid
             (GABA-A) receptor, subunit alpha 1, complete sequence
          Length = 116840

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 124   ctctgtttcactctgcttccgctc 147
             ||||||||||||||||||| ||||
Sbjct: 63604 ctctgtttcactctgcttctgctc 63581
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>gb|AC104070.3| Homo sapiens BAC clone RP11-279K24 from 4, complete sequence
          Length = 123291

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 399   attctgcgtgcatgtgtatgttca 422
             |||||| |||||||||||||||||
Sbjct: 31671 attctgtgtgcatgtgtatgttca 31648



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 399   attctgcgtgcatgtgtatgttca 422
             |||||| |||||||||||||||||
Sbjct: 31605 attctgtgtgcatgtgtatgttca 31582



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 399   attctgcgtgcatgtgtatgttca 422
             |||||| |||||||||||||||||
Sbjct: 31539 attctgtgtgcatgtgtatgttca 31516



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 399   attctgcgtgcatgtgtatgttca 422
             |||||| |||||||||||||||||
Sbjct: 31473 attctgtgtgcatgtgtatgttca 31450



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 399   attctgcgtgcatgtgtatgttca 422
             |||||| |||||||||||||||||
Sbjct: 31341 attctgtgtgcatgtgtatgttca 31318



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 399   attctgcgtgcatgtgtatgttca 422
             |||||| |||||||||||||||||
Sbjct: 31275 attctgtgtgcatgtgtatgttca 31252



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 399   attctgcgtgcatgtgtatgttca 422
             |||||| |||||||||||||||||
Sbjct: 31209 attctgtgtgcatgtgtatgttca 31186
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>gb|AC080043.5| Homo sapiens chromosome , clone RP11-45M9, complete sequence
          Length = 161443

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 506   ttttttctctcccttcgcag 525
             ||||||||||||||||||||
Sbjct: 29194 ttttttctctcccttcgcag 29175
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>gb|AC023566.11| Homo sapiens chromosome 8, clone RP11-660D5, complete sequence
          Length = 184543

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 506   ttttttctctcccttcgcag 525
             ||||||||||||||||||||
Sbjct: 79063 ttttttctctcccttcgcag 79044
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>gb|AC008705.6| Homo sapiens chromosome 5 clone CTB-77H17, complete sequence
          Length = 159709

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 403   tgcgtgcatgtgtatgttca 422
             ||||||||||||||||||||
Sbjct: 99879 tgcgtgcatgtgtatgttca 99860
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>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome
          Length = 2088737

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 500     tcttccttttttctctccct 519
               ||||||||||||||||||||
Sbjct: 1641864 tcttccttttttctctccct 1641883
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 313     gtgctggtggcgaccctgtc 332
               ||||||||||||||||||||
Sbjct: 2382079 gtgctggtggcgaccctgtc 2382060
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>gb|AC113186.6| Homo sapiens chromosome 8, clone RP11-941L11, complete sequence
          Length = 151000

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 506    ttttttctctcccttcgcag 525
              ||||||||||||||||||||
Sbjct: 138599 ttttttctctcccttcgcag 138580
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>gb|AC154609.2| Mus musculus BAC clone RP23-334N13 from 16, complete sequence
          Length = 202556

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     tctgtagtctgtacttgctg 24
             ||||||||||||||||||||
Sbjct: 11732 tctgtagtctgtacttgctg 11751
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>emb|BX248511.4| Zebrafish DNA sequence from clone CH211-243G18 in linkage group 10,
             complete sequence
          Length = 176986

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    ctttcagtactgacctattt 58
             ||||||||||||||||||||
Sbjct: 96205 ctttcagtactgacctattt 96186
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>gb|AY109713.2| Zea mays CL1191_1 mRNA sequence
          Length = 1949

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 487 tccacgctgctcgtcttcct 506
           ||||||||||||||||||||
Sbjct: 371 tccacgctgctcgtcttcct 390
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>emb|CR933820.6| Zebrafish DNA sequence from clone DKEY-183J2 in linkage group 11,
              complete sequence
          Length = 230267

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     ctttcagtactgacctattt 58
              ||||||||||||||||||||
Sbjct: 227630 ctttcagtactgacctattt 227611
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>gb|AC127569.4| Mus musculus BAC clone RP24-216E20 from 9, complete sequence
          Length = 168588

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      tgctctgtagtctgtacttg 21
              ||||||||||||||||||||
Sbjct: 147806 tgctctgtagtctgtacttg 147787
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>gb|AC090692.9| Homo sapiens chromosome 11, clone RP11-698N11, complete sequence
          Length = 179494

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 336    ctcacttcattcttagctgt 355
              ||||||||||||||||||||
Sbjct: 156190 ctcacttcattcttagctgt 156209
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>dbj|AP002075.3| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2230O14, complete
              sequence
          Length = 118977

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 502    ttccttttttctctcccttc 521
              ||||||||||||||||||||
Sbjct: 116831 ttccttttttctctcccttc 116850


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,044,108
Number of Sequences: 3902068
Number of extensions: 6044108
Number of successful extensions: 124665
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124487
Number of HSP's gapped (non-prelim): 178
length of query: 609
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 586
effective length of database: 17,143,297,704
effective search space: 10045972454544
effective search space used: 10045972454544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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