ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21n02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF411229.2| Hordeum vulgare gigantea-like protein mRNA, parti... 670 0.0
2gb|AY740524.1| Hordeum vulgare subsp. vulgare gigantea-like prot... 662 0.0
3gb|AF543844.1| Triticum aestivum gigantea (TaGI1) mRNA, complete... 432 e-118
4gb|AY679114.1| Triticum aestivum gigantea 2 (TaGI2) mRNA, comple... 293 2e-76
5gb|AY740523.1| Hordeum vulgare gigantea-like protein (GI) mRNA, ... 283 2e-73
6gb|AY679115.1| Triticum aestivum gigantea 3 (TaGI3) mRNA, comple... 278 1e-71
7ref|XM_550413.1| Oryza sativa (japonica cultivar-group), mRNA 129 7e-27
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 129 7e-27
9dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic D... 129 7e-27
10dbj|AK072166.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 7e-27
11dbj|AK067038.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 7e-27
12ref|XM_550414.1| Oryza sativa (japonica cultivar-group), mRNA 117 3e-23
13emb|AJ133787.1|OSA133787 Oryza sativa mRNA for gigantea homologu... 105 1e-19
14gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 44 0.31
15gb|AC117757.23| Mus musculus chromosome 1, clone RP24-420I4, com... 40 4.8
16ref|NM_017183.1| Rattus norvegicus interleukin 8 receptor, beta ... 40 4.8
17gb|AF030694.2| Plasmodium falciparum strain Dd2 heat shock prote... 40 4.8
18gb|AC113473.20| Mus musculus chromosome 1, clone RP23-280F6, com... 40 4.8
19ref|NM_009909.3| Mus musculus interleukin 8 receptor, beta (Il8r... 40 4.8
20gb|BC051677.1| Mus musculus interleukin 8 receptor, beta, mRNA (... 40 4.8
21gb|AF030691.1| Plasmodium falciparum strain 7G8 CG9 (cg9) and CG... 40 4.8
22gb|AF030690.1| Plasmodium falciparum strain HB3 CG9 (cg9) and CG... 40 4.8
23gb|L26549.1|MUSIL8R Mus musculus interleukin 8 receptor gene, co... 40 4.8
24emb|X77797.1|RNIL8R R.norvegicus mRNA for interleukin-8 receptor 40 4.8
25dbj|AK158234.1| Mus musculus adult inner ear cDNA, RIKEN full-le... 40 4.8
26gb|AC154389.1| Mus musculus BAC clone RP23-2H9 from chromosome 1... 40 4.8
27gb|AF260819.1|AF260819 Plasmodium falciparum CG1 protein gene, c... 40 4.8
28dbj|D17630.1|MUSITLK8 Mus musculus IL-8R mRNA for interleukin-8 ... 40 4.8
29gb|U70988.1|RNU70988 Rattus norvegicus CXC chemokine receptor (C... 40 4.8
30gb|U31207.1|MMU31207 Mus musculus interleukin-8 receptor gene, c... 40 4.8
31gb|L13239.1|MUSIL8GROA Mouse IL8/gro-alpha receptor gene, comple... 40 4.8
32gb|L23637.1|MUSIL8RB Mouse interleukin-8 receptor type B (Il8rb)... 40 4.8
33dbj|D63584.1|RATGMGSAR Rat gene for gro/MGSA receptor, complete cds 40 4.8 
>gb|AF411229.2| Hordeum vulgare gigantea-like protein mRNA, partial cds
          Length = 2900

 Score =  670 bits (338), Expect = 0.0
 Identities = 352/359 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1    gaacatctaacgtnagattgcaagnnaaaatcacaccgcgggagcaaagctccgtntgat 60
            ||||||||||||| ||||||||||  ||||||||||||||||||||||||||||| ||||
Sbjct: 2793 gaacatctaacgtcagattgcaagttaaaatcacaccgcgggagcaaagctccgtatgat 2734

                                                                        
Query: 61   tgggaacatcagctaatatacatcacatcatggggggcagactgggaatggaaagccatc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2733 tgggaacatcagctaatatacatcacatcatggggggcagactgggaatggaaagccatc 2674

                                                                        
Query: 121  cttgagcaagggattaattagccatcctgctcgctgaccatgcagcaactgctcgcacca 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2673 cttgagcaagggattaattagccatcctgctcgctgaccatgcagcaactgctcgcacca 2614

                                                                        
Query: 181  actgtnaagtgttgctgattgtcagcttcaaatatggccttgtcagcaaggaanggggca 240
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2613 actgtcaagtgttgctgattgtcagcttcaaatatggccttgtcagcaaggaagggggca 2554

                                                                        
Query: 241  gccgagctcgttagcagcancggtgaggaaggcgagggtcatcccggtggcacggcggct 300
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2553 gccgagctcgttagcagcagcggtgaggaaggcgagggtcatcccggtggcacggcggct 2494

                                                                       
Query: 301  gcgggcttcccagtctatacatctctcgacatccgcttgccagttcaccgtgtttgctg 359
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2493 gcgggcttcccagtctatacatctctcgacatccgcttgccagttcaccgtgtttgctg 2435
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>gb|AY740524.1| Hordeum vulgare subsp. vulgare gigantea-like protein (GI) gene,
            complete cds
          Length = 7682

 Score =  662 bits (334), Expect = 0.0
 Identities = 351/359 (97%)
 Strand = Plus / Minus

                                                                        
Query: 1    gaacatctaacgtnagattgcaagnnaaaatcacaccgcgggagcaaagctccgtntgat 60
            ||||||||||||| ||||||||||  ||||||||||||||||||||||||||||| ||||
Sbjct: 7657 gaacatctaacgtcagattgcaagttaaaatcacaccgcgggagcaaagctccgtatgat 7598

                                                                        
Query: 61   tgggaacatcagctaatatacatcacatcatggggggcagactgggaatggaaagccatc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7597 tgggaacatcagctaatatacatcacatcatggggggcagactgggaatggaaagccatc 7538

                                                                        
Query: 121  cttgagcaagggattaattagccatcctgctcgctgaccatgcagcaactgctcgcacca 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7537 cttgagcaagggattaattagccatcctgctcgctgaccatgcagcaactgctcgcacca 7478

                                                                        
Query: 181  actgtnaagtgttgctgattgtcagcttcaaatatggccttgtcagcaaggaanggggca 240
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 7477 actgtcaagtgttgctgattgtcagcttcaaatatggccttgtcagcaaggaagggggca 7418

                                                                        
Query: 241  gccgagctcgttagcagcancggtgaggaaggcgagggtcatcccggtggcacggcggct 300
            ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7417 gcccagctcgttagcagcagcggtgaggaaggcgagggtcatcccggtggcacggcggct 7358

                                                                       
Query: 301  gcgggcttcccagtctatacatctctcgacatccgcttgccagttcaccgtgtttgctg 359
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7357 gcgggcttcccagtctatacatctctcgacatccgcttgccagttcaccgtgtttgctg 7299
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>gb|AF543844.1| Triticum aestivum gigantea (TaGI1) mRNA, complete cds
          Length = 4012

 Score =  432 bits (218), Expect = e-118
 Identities = 239/247 (96%)
 Strand = Plus / Minus

                                                                        
Query: 113  aagccatccttgagcaagggattaattagccatcctgctcgctgaccatgcagcaactgc 172
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3775 aagccatccttgagcaagggattaattagccatcctgctcgctgaccatgcagcaactgc 3716

                                                                        
Query: 173  tcgcaccaactgtnaagtgttgctgattgtcagcttcaaatatggccttgtcagcaagga 232
            |||| |||||||| |||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 3715 tcgcgccaactgtcaagtgtcgctgattgtcagctccaaatatggccttgtcagcaagga 3656

                                                                        
Query: 233  anggggcagccgagctcgttagcagcancggtgaggaaggcgagggtcatcccggtggca 292
            | ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| 
Sbjct: 3655 agggggcagccgagctcgttagccgcagcggtgaggaaggcgagggtcatcccggtggcg 3596

                                                                        
Query: 293  cggcggctgcgggcttcccagtctatacatctctcgacatccgcttgccagttcaccgtg 352
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3595 cggcggctgcgggcttcccagtctatacatctctcgacatccgcttgccagttcaccgtg 3536

                   
Query: 353  tttgctg 359
            |||||||
Sbjct: 3535 tttgctg 3529



 Score =  137 bits (69), Expect = 3e-29
 Identities = 80/85 (94%)
 Strand = Plus / Minus

                                                                        
Query: 1    gaacatctaacgtnagattgcaagnnaaaatcacaccgcgggagcaaagctccgtntgat 60
            ||||||||||||| ||||||||||  |||||||||||| |||||||||||||||| ||||
Sbjct: 3896 gaacatctaacgtcagattgcaagttaaaatcacaccgggggagcaaagctccgtatgat 3837

                                     
Query: 61   tgggaacatcagctaatatacatca 85
            |||||||||||||||||||||||||
Sbjct: 3836 tgggaacatcagctaatatacatca 3812
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>gb|AY679114.1| Triticum aestivum gigantea 2 (TaGI2) mRNA, complete cds
          Length = 3543

 Score =  293 bits (148), Expect = 2e-76
 Identities = 161/166 (96%)
 Strand = Plus / Minus

                                                                        
Query: 194  gctgattgtcagcttcaaatatggccttgtcagcaaggaanggggcagccgagctcgtta 253
            |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 3530 gctgattgtcagctccaaatatggccttgtcagcaaggaagggggcagccgagctcgtta 3471

                                                                        
Query: 254  gcagcancggtgaggaaggcgagggtcatcccggtggcacggcggctgcgggcttcccag 313
            || ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3470 gccgcagcggtgaggaaggcgagggtcatcccggtggcgcggcggctgcgggcttcccag 3411

                                                          
Query: 314  tctatacatctctcgacatccgcttgccagttcaccgtgtttgctg 359
            ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3410 tctatacatctctcgacatccgcttgccagttcaccgtgtttgctg 3365
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>gb|AY740523.1| Hordeum vulgare gigantea-like protein (GI) mRNA, complete cds
          Length = 3480

 Score =  283 bits (143), Expect = 2e-73
 Identities = 147/149 (98%)
 Strand = Plus / Minus

                                                                        
Query: 211  aatatggccttgtcagcaaggaanggggcagccgagctcgttagcagcancggtgaggaa 270
            ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 3480 aatatggccttgtcagcaaggaagggggcagccgagctcgttagcagcagcggtgaggaa 3421

                                                                        
Query: 271  ggcgagggtcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgac 330
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3420 ggcgagggtcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgac 3361

                                         
Query: 331  atccgcttgccagttcaccgtgtttgctg 359
            |||||||||||||||||||||||||||||
Sbjct: 3360 atccgcttgccagttcaccgtgtttgctg 3332
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>gb|AY679115.1| Triticum aestivum gigantea 3 (TaGI3) mRNA, complete cds
          Length = 3548

 Score =  278 bits (140), Expect = 1e-71
 Identities = 159/166 (95%)
 Strand = Plus / Minus

                                                                        
Query: 194  gctgattgtcagcttcaaatatggccttgtcagcaaggaanggggcagccgagctcgtta 253
            |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 3536 gctgattgtcagctccaaatatggccttgtcagcaaggaagggggcagccgagctcgtta 3477

                                                                        
Query: 254  gcagcancggtgaggaaggcgagggtcatcccggtggcacggcggctgcgggcttcccag 313
            || ||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 3476 gccgcagcggtgaggaaggcgagggtcatcccggtggcgcgccggctgcgggcttcccag 3417

                                                          
Query: 314  tctatacatctctcgacatccgcttgccagttcaccgtgtttgctg 359
            |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3416 tctatacatctctccacatccgcttgccagttcaccgtgtttgctg 3371
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>ref|XM_550413.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4184

 Score =  129 bits (65), Expect = 7e-27
 Identities = 114/131 (87%)
 Strand = Plus / Minus

                                                                        
Query: 215  tggccttgtcagcaaggaanggggcagccgagctcgttagcagcancggtgaggaaggcg 274
            ||||||||||||||||  |  |||||||||||||| || || ||  ||||||||||||||
Sbjct: 3928 tggccttgtcagcaagtgagtgggcagccgagctccttcgccgccgcggtgaggaaggcg 3869

                                                                        
Query: 275  agggtcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatcc 334
            || |||| ||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| 
Sbjct: 3868 agcgtcagcccggtggcgcggcggctgtgggcttcccactctatgcatctctccacatcg 3809

                       
Query: 335  gcttgccagtt 345
            |||||||||||
Sbjct: 3808 gcttgccagtt 3798



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 60   ttgggaacatcagctaatat 79
            ||||||||||||||||||||
Sbjct: 4041 ttgggaacatcagctaatat 4022
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  129 bits (65), Expect = 7e-27
 Identities = 114/131 (87%)
 Strand = Plus / Plus

                                                                           
Query: 215     tggccttgtcagcaaggaanggggcagccgagctcgttagcagcancggtgaggaaggcg 274
               ||||||||||||||||  |  |||||||||||||| || || ||  ||||||||||||||
Sbjct: 4328717 tggccttgtcagcaagtgagtgggcagccgagctccttcgccgccgcggtgaggaaggcg 4328776

                                                                           
Query: 275     agggtcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatcc 334
               || |||| ||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| 
Sbjct: 4328777 agcgtcagcccggtggcgcggcggctgtgggcttcccactctatgcatctctccacatcg 4328836

                          
Query: 335     gcttgccagtt 345
               |||||||||||
Sbjct: 4328837 gcttgccagtt 4328847



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 60      ttgggaacatcagctaatat 79
               ||||||||||||||||||||
Sbjct: 4328604 ttgggaacatcagctaatat 4328623
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>dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0666G04
          Length = 141983

 Score =  129 bits (65), Expect = 7e-27
 Identities = 114/131 (87%)
 Strand = Plus / Plus

                                                                          
Query: 215    tggccttgtcagcaaggaanggggcagccgagctcgttagcagcancggtgaggaaggcg 274
              ||||||||||||||||  |  |||||||||||||| || || ||  ||||||||||||||
Sbjct: 108487 tggccttgtcagcaagtgagtgggcagccgagctccttcgccgccgcggtgaggaaggcg 108546

                                                                          
Query: 275    agggtcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatcc 334
              || |||| ||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| 
Sbjct: 108547 agcgtcagcccggtggcgcggcggctgtgggcttcccactctatgcatctctccacatcg 108606

                         
Query: 335    gcttgccagtt 345
              |||||||||||
Sbjct: 108607 gcttgccagtt 108617



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     ttgggaacatcagctaatat 79
              ||||||||||||||||||||
Sbjct: 108374 ttgggaacatcagctaatat 108393
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>dbj|AK072166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134K20, full
            insert sequence
          Length = 4252

 Score =  129 bits (65), Expect = 7e-27
 Identities = 114/131 (87%)
 Strand = Plus / Minus

                                                                        
Query: 215  tggccttgtcagcaaggaanggggcagccgagctcgttagcagcancggtgaggaaggcg 274
            ||||||||||||||||  |  |||||||||||||| || || ||  ||||||||||||||
Sbjct: 3897 tggccttgtcagcaagtgagtgggcagccgagctccttcgccgccgcggtgaggaaggcg 3838

                                                                        
Query: 275  agggtcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatcc 334
            || |||| ||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| 
Sbjct: 3837 agcgtcagcccggtggcgcggcggctgtgggcttcccactctatgcatctctccacatcg 3778

                       
Query: 335  gcttgccagtt 345
            |||||||||||
Sbjct: 3777 gcttgccagtt 3767



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 60   ttgggaacatcagctaatat 79
            ||||||||||||||||||||
Sbjct: 4010 ttgggaacatcagctaatat 3991
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>dbj|AK067038.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091I22, full
            insert sequence
          Length = 4185

 Score =  129 bits (65), Expect = 7e-27
 Identities = 114/131 (87%)
 Strand = Plus / Minus

                                                                        
Query: 215  tggccttgtcagcaaggaanggggcagccgagctcgttagcagcancggtgaggaaggcg 274
            ||||||||||||||||  |  |||||||||||||| || || ||  ||||||||||||||
Sbjct: 3928 tggccttgtcagcaagtgagtgggcagccgagctccttcgccgccgcggtgaggaaggcg 3869

                                                                        
Query: 275  agggtcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatcc 334
            || |||| ||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| 
Sbjct: 3868 agcgtcagcccggtggcgcggcggctgtgggcttcccactctatgcatctctccacatcg 3809

                       
Query: 335  gcttgccagtt 345
            |||||||||||
Sbjct: 3808 gcttgccagtt 3798



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 60   ttgggaacatcagctaatat 79
            ||||||||||||||||||||
Sbjct: 4041 ttgggaacatcagctaatat 4022
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>ref|XM_550414.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 786

 Score =  117 bits (59), Expect = 3e-23
 Identities = 97/110 (88%)
 Strand = Plus / Minus

                                                                       
Query: 236 gggcagccgagctcgttagcagcancggtgaggaaggcgagggtcatcccggtggcacgg 295
           |||||||||||||| || || ||  |||||||||||||||| |||| ||||||||| |||
Sbjct: 773 gggcagccgagctccttcgccgccgcggtgaggaaggcgagcgtcagcccggtggcgcgg 714

                                                             
Query: 296 cggctgcgggcttcccagtctatacatctctcgacatccgcttgccagtt 345
           |||||| |||||||||| ||||| |||||||| ||||| |||||||||||
Sbjct: 713 cggctgtgggcttcccactctatgcatctctccacatcggcttgccagtt 664
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>emb|AJ133787.1|OSA133787 Oryza sativa mRNA for gigantea homologue, partial
          Length = 2931

 Score =  105 bits (53), Expect = 1e-19
 Identities = 108/126 (85%), Gaps = 3/126 (2%)
 Strand = Plus / Minus

                                                                        
Query: 220  ttgtcagcaaggaanggggcagccgagctcgttagcagcancggtgaggaaggcgagggt 279
            |||||||||||  |  |||||||||||||| || || |   |||||||||||||||| ||
Sbjct: 2931 ttgtcagcaagtgagtgggcagccgagctccttcgccg---cggtgaggaaggcgagcgt 2875

                                                                        
Query: 280  catcccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatccgcttg 339
            || ||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| |||||
Sbjct: 2874 cagcccggtggcgcggcggctgtgggcttcccactctatgcatctctccacatcggcttg 2815

                  
Query: 340  ccagtt 345
            ||||||
Sbjct: 2814 ccagtt 2809
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 154     ctgaccatgcagcaactgctcg 175
               ||||||||||||||||||||||
Sbjct: 2364775 ctgaccatgcagcaactgctcg 2364754
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>gb|AC117757.23| Mus musculus chromosome 1, clone RP24-420I4, complete sequence
          Length = 183087

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 213    tatggccttgtcagcaagga 232
              ||||||||||||||||||||
Sbjct: 165426 tatggccttgtcagcaagga 165445
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>ref|NM_017183.1| Rattus norvegicus interleukin 8 receptor, beta (Il8rb), mRNA
          Length = 1324

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  tatggccttgtcagcaagga 232
            ||||||||||||||||||||
Sbjct: 1122 tatggccttgtcagcaagga 1141
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>gb|AF030694.2| Plasmodium falciparum strain Dd2 heat shock protein 86 (HSP86), O1
             (o1), O3 (o3), O2 (o2), CG8 (cg8), CG4 (cg4), CG3 (cg3),
             putative chloroquine resistance transporter (crt), CG9
             (cg9), CG1 (cg1), CG6 (cg6), CG2 (cg2), and CG7 (cg7)
             genes, complete cds
          Length = 47573

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    tgggaacatcagctaatata 80
             ||||||||||||||||||||
Sbjct: 30343 tgggaacatcagctaatata 30362
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>gb|AC113473.20| Mus musculus chromosome 1, clone RP23-280F6, complete sequence
          Length = 221025

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   tatggccttgtcagcaagga 232
             ||||||||||||||||||||
Sbjct: 68557 tatggccttgtcagcaagga 68576
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>ref|NM_009909.3| Mus musculus interleukin 8 receptor, beta (Il8rb), mRNA
          Length = 3043

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  tatggccttgtcagcaagga 232
            ||||||||||||||||||||
Sbjct: 1136 tatggccttgtcagcaagga 1155
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>gb|BC051677.1| Mus musculus interleukin 8 receptor, beta, mRNA (cDNA clone MGC:60615
            IMAGE:30023687), complete cds
          Length = 2842

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  tatggccttgtcagcaagga 232
            ||||||||||||||||||||
Sbjct: 1109 tatggccttgtcagcaagga 1128
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>gb|AF030691.1| Plasmodium falciparum strain 7G8 CG9 (cg9) and CG1 (cg1) genes,
            complete cds
          Length = 4005

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 61   tgggaacatcagctaatata 80
            ||||||||||||||||||||
Sbjct: 2118 tgggaacatcagctaatata 2137
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>gb|AF030690.1| Plasmodium falciparum strain HB3 CG9 (cg9) and CG1 (cg1) genes,
            complete cds
          Length = 4005

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 61   tgggaacatcagctaatata 80
            ||||||||||||||||||||
Sbjct: 2140 tgggaacatcagctaatata 2159
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>gb|L26549.1|MUSIL8R Mus musculus interleukin 8 receptor gene, complete cds
          Length = 2333

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  tatggccttgtcagcaagga 232
            ||||||||||||||||||||
Sbjct: 2089 tatggccttgtcagcaagga 2108
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>emb|X77797.1|RNIL8R R.norvegicus mRNA for interleukin-8 receptor
          Length = 1324

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  tatggccttgtcagcaagga 232
            ||||||||||||||||||||
Sbjct: 1122 tatggccttgtcagcaagga 1141
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>dbj|AK158234.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched
            library, clone:F930044K23 product:interleukin 8 receptor,
            beta, full insert sequence
          Length = 2220

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  tatggccttgtcagcaagga 232
            ||||||||||||||||||||
Sbjct: 1142 tatggccttgtcagcaagga 1161
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>gb|AC154389.1| Mus musculus BAC clone RP23-2H9 from chromosome 13, complete sequence
          Length = 215256

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 117    catccttgagcaagggattaattagccatcct 148
              ||||||| || |||||||| ||||||||||||
Sbjct: 139265 catccttaagtaagggattcattagccatcct 139296
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>gb|AF260819.1|AF260819 Plasmodium falciparum CG1 protein gene, complete cds
          Length = 2820

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 61   tgggaacatcagctaatata 80
            ||||||||||||||||||||
Sbjct: 1001 tgggaacatcagctaatata 1020
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>dbj|D17630.1|MUSITLK8 Mus musculus IL-8R mRNA for interleukin-8 receptor, complete cds
          Length = 1858

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  tatggccttgtcagcaagga 232
            ||||||||||||||||||||
Sbjct: 1132 tatggccttgtcagcaagga 1151
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>gb|U70988.1|RNU70988 Rattus norvegicus CXC chemokine receptor (CXCR2) gene, complete cds
          Length = 1269

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  tatggccttgtcagcaagga 232
            ||||||||||||||||||||
Sbjct: 1152 tatggccttgtcagcaagga 1171
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>gb|U31207.1|MMU31207 Mus musculus interleukin-8 receptor gene, complete cds
          Length = 1961

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  tatggccttgtcagcaagga 232
            ||||||||||||||||||||
Sbjct: 1107 tatggccttgtcagcaagga 1126
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>gb|L13239.1|MUSIL8GROA Mouse IL8/gro-alpha receptor gene, complete cds
          Length = 1080

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  tatggccttgtcagcaagga 232
            ||||||||||||||||||||
Sbjct: 991  tatggccttgtcagcaagga 1010
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>gb|L23637.1|MUSIL8RB Mouse interleukin-8 receptor type B (Il8rb) gene, complete cds
          Length = 3450

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  tatggccttgtcagcaagga 232
            ||||||||||||||||||||
Sbjct: 2086 tatggccttgtcagcaagga 2105
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>dbj|D63584.1|RATGMGSAR Rat gene for gro/MGSA receptor, complete cds
          Length = 1460

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  tatggccttgtcagcaagga 232
            ||||||||||||||||||||
Sbjct: 1311 tatggccttgtcagcaagga 1330


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,071,300
Number of Sequences: 3902068
Number of extensions: 2071300
Number of successful extensions: 34180
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34097
Number of HSP's gapped (non-prelim): 83
length of query: 359
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 337
effective length of database: 17,147,199,772
effective search space: 5778606323164
effective search space used: 5778606323164
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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