ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd21m23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 335 bits (169), Expect = 9e-89 Identities = 304/349 (87%) Strand = Plus / Minus Query: 152 gacgccccgcttcaccgcagcggcgtacactgccatggcgtcgggccatctcccctgccg 211 |||||| |||||||| || ||||||||||| ||||| ||||||||||| ||||||||||| Sbjct: 12419716 gacgccgcgcttcacggcggcggcgtacacggccatcgcgtcgggccacctcccctgccg 12419657 Query: 212 gctgagctcttcgagcagcgcgtcgaacgcgttccggccgggcacgaagtccttcgcgat 271 | |||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct: 12419656 ggcgagctcgccgagcagcgcgtcgaacgcgttccggccgggcacgaagtccctggcgat 12419597 Query: 272 caccacggccagcacccggagagcgtcgtaagtcctgctccggtcgcacagcgcgcgcac 331 ||||| ||||||||||| || |||||| | || || || |||||||||||||| || Sbjct: 12419596 caccagcgccagcacccgcagcgcgtcgcgcgcccggccacgctcgcacagcgcgcggac 12419537 Query: 332 cacgtccgtgtacgcgcgcttccgcagcgcgtaccccttgcgcaccatgtcgtccaatat 391 ||||| |||||||||||||||||||||||||| ||| ||||| |||| || ||| | Sbjct: 12419536 gacgtcggtgtacgcgcgcttccgcagcgcgtaacccctgcgcgccatctcacccaggag 12419477 Query: 392 ggccacggccgcgtccacctcgccgccgcgtgccagagcctgcgccatcaggcagtacgt 451 | ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || Sbjct: 12419476 cgacacggccgcgtccacctcgccgccgcgcgccagcgcctgcgccatcaggcagtaggt 12419417 Query: 452 gtacgacaccggctcgtgcccggcggccacgaccttgccgaacacctcc 500 ||||||||||||||||||||||| ||||| | |||||||||||||||| Sbjct: 12419416 gtacgacaccggctcgtgcccggacgccaccagcttgccgaacacctcc 12419368 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 ctcttccttctcctgatcccgcgc 115 |||||||||||||| ||||||||| Sbjct: 20498960 ctcttccttctccttatcccgcgc 20498983 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 gcccggcggccacgaccttg 488 |||||||||||||||||||| Sbjct: 11903883 gcccggcggccacgaccttg 11903902
>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14, complete sequence Length = 132560 Score = 335 bits (169), Expect = 9e-89 Identities = 304/349 (87%) Strand = Plus / Minus Query: 152 gacgccccgcttcaccgcagcggcgtacactgccatggcgtcgggccatctcccctgccg 211 |||||| |||||||| || ||||||||||| ||||| ||||||||||| ||||||||||| Sbjct: 78734 gacgccgcgcttcacggcggcggcgtacacggccatcgcgtcgggccacctcccctgccg 78675 Query: 212 gctgagctcttcgagcagcgcgtcgaacgcgttccggccgggcacgaagtccttcgcgat 271 | |||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct: 78674 ggcgagctcgccgagcagcgcgtcgaacgcgttccggccgggcacgaagtccctggcgat 78615 Query: 272 caccacggccagcacccggagagcgtcgtaagtcctgctccggtcgcacagcgcgcgcac 331 ||||| ||||||||||| || |||||| | || || || |||||||||||||| || Sbjct: 78614 caccagcgccagcacccgcagcgcgtcgcgcgcccggccacgctcgcacagcgcgcggac 78555 Query: 332 cacgtccgtgtacgcgcgcttccgcagcgcgtaccccttgcgcaccatgtcgtccaatat 391 ||||| |||||||||||||||||||||||||| ||| ||||| |||| || ||| | Sbjct: 78554 gacgtcggtgtacgcgcgcttccgcagcgcgtaacccctgcgcgccatctcacccaggag 78495 Query: 392 ggccacggccgcgtccacctcgccgccgcgtgccagagcctgcgccatcaggcagtacgt 451 | ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || Sbjct: 78494 cgacacggccgcgtccacctcgccgccgcgcgccagcgcctgcgccatcaggcagtaggt 78435 Query: 452 gtacgacaccggctcgtgcccggcggccacgaccttgccgaacacctcc 500 ||||||||||||||||||||||| ||||| | |||||||||||||||| Sbjct: 78434 gtacgacaccggctcgtgcccggacgccaccagcttgccgaacacctcc 78386
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 335 bits (169), Expect = 9e-89 Identities = 304/349 (87%) Strand = Plus / Minus Query: 152 gacgccccgcttcaccgcagcggcgtacactgccatggcgtcgggccatctcccctgccg 211 |||||| |||||||| || ||||||||||| ||||| ||||||||||| ||||||||||| Sbjct: 12416479 gacgccgcgcttcacggcggcggcgtacacggccatcgcgtcgggccacctcccctgccg 12416420 Query: 212 gctgagctcttcgagcagcgcgtcgaacgcgttccggccgggcacgaagtccttcgcgat 271 | |||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct: 12416419 ggcgagctcgccgagcagcgcgtcgaacgcgttccggccgggcacgaagtccctggcgat 12416360 Query: 272 caccacggccagcacccggagagcgtcgtaagtcctgctccggtcgcacagcgcgcgcac 331 ||||| ||||||||||| || |||||| | || || || |||||||||||||| || Sbjct: 12416359 caccagcgccagcacccgcagcgcgtcgcgcgcccggccacgctcgcacagcgcgcggac 12416300 Query: 332 cacgtccgtgtacgcgcgcttccgcagcgcgtaccccttgcgcaccatgtcgtccaatat 391 ||||| |||||||||||||||||||||||||| ||| ||||| |||| || ||| | Sbjct: 12416299 gacgtcggtgtacgcgcgcttccgcagcgcgtaacccctgcgcgccatctcacccaggag 12416240 Query: 392 ggccacggccgcgtccacctcgccgccgcgtgccagagcctgcgccatcaggcagtacgt 451 | ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || Sbjct: 12416239 cgacacggccgcgtccacctcgccgccgcgcgccagcgcctgcgccatcaggcagtaggt 12416180 Query: 452 gtacgacaccggctcgtgcccggcggccacgaccttgccgaacacctcc 500 ||||||||||||||||||||||| ||||| | |||||||||||||||| Sbjct: 12416179 gtacgacaccggctcgtgcccggacgccaccagcttgccgaacacctcc 12416131 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 ctcttccttctcctgatcccgcgc 115 |||||||||||||| ||||||||| Sbjct: 20491989 ctcttccttctccttatcccgcgc 20492012 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 gcccggcggccacgaccttg 488 |||||||||||||||||||| Sbjct: 11900646 gcccggcggccacgaccttg 11900665
>dbj|AK100067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162P09, full insert sequence Length = 2292 Score = 335 bits (169), Expect = 9e-89 Identities = 304/349 (87%) Strand = Plus / Minus Query: 152 gacgccccgcttcaccgcagcggcgtacactgccatggcgtcgggccatctcccctgccg 211 |||||| |||||||| || ||||||||||| ||||| ||||||||||| ||||||||||| Sbjct: 1670 gacgccgcgcttcacggcggcggcgtacacggccatcgcgtcgggccacctcccctgccg 1611 Query: 212 gctgagctcttcgagcagcgcgtcgaacgcgttccggccgggcacgaagtccttcgcgat 271 | |||||| ||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct: 1610 ggcgagctcgccgagcagcgcgtcgaacgcgttccggccgggcacgaagtccctggcgat 1551 Query: 272 caccacggccagcacccggagagcgtcgtaagtcctgctccggtcgcacagcgcgcgcac 331 ||||| ||||||||||| || |||||| | || || || |||||||||||||| || Sbjct: 1550 caccagcgccagcacccgcagcgcgtcgcgcgcccggccacgctcgcacagcgcgcggac 1491 Query: 332 cacgtccgtgtacgcgcgcttccgcagcgcgtaccccttgcgcaccatgtcgtccaatat 391 ||||| |||||||||||||||||||||||||| ||| ||||| |||| || ||| | Sbjct: 1490 gacgtcggtgtacgcgcgcttccgcagcgcgtaacccctgcgcgccatctcacccaggag 1431 Query: 392 ggccacggccgcgtccacctcgccgccgcgtgccagagcctgcgccatcaggcagtacgt 451 | ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || Sbjct: 1430 cgacacggccgcgtccacctcgccgccgcgcgccagcgcctgcgccatcaggcagtaggt 1371 Query: 452 gtacgacaccggctcgtgcccggcggccacgaccttgccgaacacctcc 500 ||||||||||||||||||||||| ||||| | |||||||||||||||| Sbjct: 1370 gtacgacaccggctcgtgcccggacgccaccagcttgccgaacacctcc 1322
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Plus Query: 110 ccgcgccagcgcctccttgacgtgacgc 137 ||||||||||||||||| |||||||||| Sbjct: 3758230 ccgcgccagcgcctcctcgacgtgacgc 3758257
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Plus Query: 312 cggtcgcacagcgcgcgcaccacgtccg 339 |||||||||||||||||||||| ||||| Sbjct: 4198820 cggtcgcacagcgcgcgcaccaggtccg 4198847
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 154 cgccccgcttcaccgcagcggc 175 |||||||||||||||||||||| Sbjct: 2095 cgccccgcttcaccgcagcggc 2116 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 ccacgaccttgccgaacacc 497 |||||||||||||||||||| Sbjct: 1174619 ccacgaccttgccgaacacc 1174638
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 154 cgccccgcttcaccgcagcggc 175 |||||||||||||||||||||| Sbjct: 2270 cgccccgcttcaccgcagcggc 2291
>gb|AE012225.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 133 of 460 of the complete genome Length = 10544 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 392 ggccacggccgcgtccacctcg 413 |||||||||||||||||||||| Sbjct: 4822 ggccacggccgcgtccacctcg 4801
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 392 ggccacggccgcgtccacctcg 413 |||||||||||||||||||||| Sbjct: 3569206 ggccacggccgcgtccacctcg 3569227 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 tcgagcagcgcgtcgaacgc 241 |||||||||||||||||||| Sbjct: 4324471 tcgagcagcgcgtcgaacgc 4324452
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 464 ctcgtgcccggcggccacgac 484 ||||||||||||||||||||| Sbjct: 3291014 ctcgtgcccggcggccacgac 3291034 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 472 cggcggccacgaccttgccga 492 ||||||||||||||||||||| Sbjct: 2017235 cggcggccacgaccttgccga 2017255
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 471 ccggcggccacgaccttgccgaaca 495 ||||||||||||||| ||||||||| Sbjct: 2622193 ccggcggccacgaccatgccgaaca 2622217
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 361 cgtaccccttgcgcaccatgtcgtc 385 ||||||||||||||||||| ||||| Sbjct: 7852222 cgtaccccttgcgcaccatctcgtc 7852198 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 459 accggctcgtgcccggcggcc 479 ||||||||||||||||||||| Sbjct: 5846004 accggctcgtgcccggcggcc 5845984
>gb|AF546146.1| Lechevalieria aerocolonigenes UnbL (unbL), UnbV (unbV), UnbU (unbU), PksE (pksE), and TebC (tebC) genes, complete cds Length = 10015 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 266 cgcgatcaccacggccagcac 286 ||||||||||||||||||||| Sbjct: 3256 cgcgatcaccacggccagcac 3236
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 ctcttcgagcagcgcgtcga 237 |||||||||||||||||||| Sbjct: 401452 ctcttcgagcagcgcgtcga 401471
>ref|NM_184789.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1209 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 ctcttccttctcctgatcccgcgc 115 |||||||||||||| ||||||||| Sbjct: 825 ctcttccttctccttatcccgcgc 802
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 tcgagcagcgcgtcgaacgc 241 |||||||||||||||||||| Sbjct: 3451325 tcgagcagcgcgtcgaacgc 3451344
>gb|AY771999.1| Synthetic construct DEBS polyketide synthase gene cluster, complete sequence Length = 31531 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 cgcgtgccagagcctgcgcc 437 |||||||||||||||||||| Sbjct: 2302 cgcgtgccagagcctgcgcc 2321
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 cttcgagcagcgcgtcgaac 239 |||||||||||||||||||| Sbjct: 849830 cttcgagcagcgcgtcgaac 849811
>ref|NM_011552.1| Mus musculus Treacher Collins Franceschetti syndrome 1, homolog (Tcof1), mRNA Length = 4013 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 cctcttccttctcctgatcc 110 |||||||||||||||||||| Sbjct: 333 cctcttccttctcctgatcc 314
>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07, complete sequence Length = 159932 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 gccgcgtccacctcgccgcc 418 |||||||||||||||||||| Sbjct: 66610 gccgcgtccacctcgccgcc 66629
>ref|XM_658962.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6450.2), mRNA Length = 744 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 tggccacggccgcgtccacc 410 |||||||||||||||||||| Sbjct: 232 tggccacggccgcgtccacc 213
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 ccgcgccagcgcctccttgacgtg 133 ||||||||||||||||| |||||| Sbjct: 1158475 ccgcgccagcgcctcctcgacgtg 1158452
>gb|AC139759.4| Mus musculus BAC clone RP23-385E10 from chromosome 18, complete sequence Length = 200426 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 cctcttccttctcctgatcc 110 |||||||||||||||||||| Sbjct: 128208 cctcttccttctcctgatcc 128227
>ref|XM_534781.2| PREDICTED: Canis familiaris similar to Actin, aortic smooth muscle (Alpha-actin 2) (LOC477587), mRNA Length = 1293 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 390 atggccacggccgcgtccacctcg 413 |||||||||||||||||| ||||| Sbjct: 705 atggccacggccgcgtcctcctcg 728
>gb|BC021514.1| Mus musculus Treacher Collins Franceschetti syndrome 1, homolog, mRNA (cDNA clone IMAGE:5351783), containing frame-shift errors Length = 4088 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 cctcttccttctcctgatcc 110 |||||||||||||||||||| Sbjct: 394 cctcttccttctcctgatcc 375
>gb|BC046608.1| Mus musculus Treacher Collins Franceschetti syndrome 1, homolog, mRNA (cDNA clone IMAGE:6397792), containing frame-shift errors Length = 3772 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 cctcttccttctcctgatcc 110 |||||||||||||||||||| Sbjct: 343 cctcttccttctcctgatcc 324
>gb|BC060105.1| Mus musculus Treacher Collins Franceschetti syndrome 1, homolog, mRNA (cDNA clone IMAGE:6418212), partial cds Length = 4001 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 cctcttccttctcctgatcc 110 |||||||||||||||||||| Sbjct: 342 cctcttccttctcctgatcc 323
>gb|AC091302.5| Oryza sativa chromosome 3 BAC OSJNBb0015I21 genomic sequence, complete sequence Length = 101073 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 ctcttccttctcctgatcccgcgc 115 |||||||||||||| ||||||||| Sbjct: 13025 ctcttccttctccttatcccgcgc 13048
>gb|BC057342.1| Mus musculus Treacher Collins Franceschetti syndrome 1, homolog, mRNA (cDNA clone MGC:67019 IMAGE:6825735), complete cds Length = 4631 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 cctcttccttctcctgatcc 110 |||||||||||||||||||| Sbjct: 342 cctcttccttctcctgatcc 323
>gb|BC052669.1| Mus musculus Treacher Collins Franceschetti syndrome 1, homolog, mRNA (cDNA clone IMAGE:30055011), partial cds Length = 4039 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 cctcttccttctcctgatcc 110 |||||||||||||||||||| Sbjct: 361 cctcttccttctcctgatcc 342
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 ccgcgccagcgcctccttgacgtg 133 ||||||||||||||||| |||||| Sbjct: 1451379 ccgcgccagcgcctcctcgacgtg 1451356
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 gagcctgcgccatcaggcag 446 |||||||||||||||||||| Sbjct: 1402275 gagcctgcgccatcaggcag 1402294
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 ccgcgccagcgcctccttgacgtg 133 ||||||||||||||||| |||||| Sbjct: 3652173 ccgcgccagcgcctcctcgacgtg 3652196
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome Length = 5057531 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 accatgtcgtccaatatggc 394 |||||||||||||||||||| Sbjct: 2187155 accatgtcgtccaatatggc 2187174
>gb|AE012157.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 65 of 460 of the complete genome Length = 12504 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 tcgagcagcgcgtcgaacgc 241 |||||||||||||||||||| Sbjct: 3826 tcgagcagcgcgtcgaacgc 3845
>gb|AF204145.1| Xanthomonas campestris pv. campestris LPS biosynthetic cluster, partial sequence; and putative electron-transferring flavoprotein beta subunit (etfS) and putative electron-transferring flavoprotein alpha subunit (etfL) genes, complete cds Length = 37753 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 tcgagcagcgcgtcgaacgc 241 |||||||||||||||||||| Sbjct: 35813 tcgagcagcgcgtcgaacgc 35794
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 cgatcaccacggccagcacc 287 |||||||||||||||||||| Sbjct: 2479417 cgatcaccacggccagcacc 2479398
>gb|AC105225.5| Homo sapiens chromosome 8, clone RP11-775E18, complete sequence Length = 135609 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 ccacgcctcttccttctcct 105 |||||||||||||||||||| Sbjct: 52216 ccacgcctcttccttctcct 52235
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 tcgagcagcgcgtcgaacgc 241 |||||||||||||||||||| Sbjct: 2924979 tcgagcagcgcgtcgaacgc 2924960
>dbj|AK089518.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F730044M07 product:TREACLE PROTEIN (TREACHER COLLINS SYNDROME PROTEIN) (PUTATIVE NUCLEOLAR TRAFFICKING PHOSPHOPROTEIN) homolog [Mus musculus], full insert sequence Length = 4020 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 cctcttccttctcctgatcc 110 |||||||||||||||||||| Sbjct: 355 cctcttccttctcctgatcc 336
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 gccgcgtccacctcgccgcc 418 |||||||||||||||||||| Sbjct: 17536805 gccgcgtccacctcgccgcc 17536824
>gb|AC015599.5|AC015599 Homo sapiens chromosome , clone RP11-45B19, complete sequence Length = 162607 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 ccacgcctcttccttctcct 105 |||||||||||||||||||| Sbjct: 32125 ccacgcctcttccttctcct 32144
>gb|AC084319.5|AC084319 Oryza sativa chromosome 3 BAC OSJNBa0004B24 genomic sequence, complete sequence Length = 152883 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 ctcttccttctcctgatcccgcgc 115 |||||||||||||| ||||||||| Sbjct: 143260 ctcttccttctccttatcccgcgc 143283
>dbj|AB167394.1| Myxococcus xanthus cbpA and cbpB genes for CRP homologous protein, PKA regulatory subunit homologous protein, complete cds Length = 5262 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 cagcgcgcgcaccacgtccg 339 |||||||||||||||||||| Sbjct: 3392 cagcgcgcgcaccacgtccg 3373
>gb|AC137070.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0035J18, from chromsome 3, complete sequence Length = 162711 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 469 gcccggcggccacgaccttg 488 |||||||||||||||||||| Sbjct: 6770 gcccggcggccacgaccttg 6751
>gb|AY971524.1| Corallococcus sp. KYC1037 putative cAMP-binding protein gene, complete cds Length = 1218 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 cagcgcgcgcaccacgtccg 339 |||||||||||||||||||| Sbjct: 552 cagcgcgcgcaccacgtccg 533
>gb|AY971523.1| Stigmatella sp. KYC1019 putative cAMP-binding protein gene, complete cds Length = 1218 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 cagcgcgcgcaccacgtccg 339 |||||||||||||||||||| Sbjct: 552 cagcgcgcgcaccacgtccg 533
>gb|AY971522.1| Myxobacter sp. HK1 putative cAMP-binding protein gene, complete cds Length = 1218 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 cagcgcgcgcaccacgtccg 339 |||||||||||||||||||| Sbjct: 552 cagcgcgcgcaccacgtccg 533
>gb|AC135075.5| Homo sapiens chromosome 8, clone RP11-557G24, complete sequence Length = 72016 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 ccacgcctcttccttctcct 105 |||||||||||||||||||| Sbjct: 64627 ccacgcctcttccttctcct 64646
>gb|AC027702.18| Homo sapiens chromosome 8, clone RP11-108L9, complete sequence Length = 125719 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 495 acctccttggcttccctcag 514 |||||||||||||||||||| Sbjct: 56543 acctccttggcttccctcag 56562
>dbj|AK069396.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014K13, full insert sequence Length = 1824 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 ctcttccttctcctgatcccgcgc 115 |||||||||||||| ||||||||| Sbjct: 1045 ctcttccttctccttatcccgcgc 1022
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 tcgagcagcgcgtcgaacgc 241 |||||||||||||||||||| Sbjct: 4277099 tcgagcagcgcgtcgaacgc 4277118
>gb|AY106609.1| Zea mays PCO140750 mRNA sequence Length = 634 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 398 ggccgcgtccacctcgccgccgcg 421 |||||||||| ||||||||||||| Sbjct: 170 ggccgcgtccgcctcgccgccgcg 193
>gb|AC112948.12| Mus musculus chromosome 8, clone RP23-299I18, complete sequence Length = 197546 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 cctcttccttctcctgatcc 110 |||||||||||||||||||| Sbjct: 137385 cctcttccttctcctgatcc 137366
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 97 ccttctcctgatcccgcgccagcgcctc 124 |||||| | ||||||||||||||||||| Sbjct: 2425446 ccttctgcggatcccgcgccagcgcctc 2425473
>gb|AF001794.1|MMAF001794 Mus musculus Treacher Collins Syndrome protein (Tcof1) mRNA, complete cds Length = 4013 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 cctcttccttctcctgatcc 110 |||||||||||||||||||| Sbjct: 333 cctcttccttctcctgatcc 314
>gb|U81030.1|MMU81030 Mus musculus treacle (tcof1) mRNA, complete cds Length = 4428 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 cctcttccttctcctgatcc 110 |||||||||||||||||||| Sbjct: 331 cctcttccttctcctgatcc 312
>gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0014I10, complete sequence Length = 113946 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 gcccggcggccacgaccttg 488 |||||||||||||||||||| Sbjct: 5145 gcccggcggccacgaccttg 5164 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,766,520 Number of Sequences: 3902068 Number of extensions: 2766520 Number of successful extensions: 64040 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61403 Number of HSP's gapped (non-prelim): 2637 length of query: 529 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 506 effective length of database: 17,143,297,704 effective search space: 8674508638224 effective search space used: 8674508638224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
