ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22b18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SCNNC_XENLA (O13262) Amiloride-sensitive sodium channel beta-2-s... 96 2e-20
2SCNNB_XENLA (P51169) Amiloride-sensitive sodium channel beta-sub... 83 2e-16
3SCNNB_RABIT (O97742) Amiloride-sensitive sodium channel beta-sub... 50 2e-06
4SCNNB_CANFA (Q95165) Amiloride-sensitive sodium channel beta-sub... 48 6e-06
5SCNNB_HUMAN (P51168) Amiloride-sensitive sodium channel beta-sub... 48 8e-06
6SCNNB_RAT (P37090) Amiloride-sensitive sodium channel beta-subun... 46 3e-05
7SCNNB_MOUSE (Q9WU38) Amiloride-sensitive sodium channel beta-sub... 46 3e-05
8TNR7_HUMAN (P26842) Tumor necrosis factor receptor superfamily m... 30 1.8
9TMEPA_MOUSE (Q9D7R2) Transmembrane prostate androgen-induced pro... 29 3.1

>SCNNC_XENLA (O13262) Amiloride-sensitive sodium channel beta-2-subunit|
           (Epithelial Na(+) channel beta-2 subunit) (Beta-2 ENAC)
           (Nonvoltage-gated sodium channel 1 beta-2 subunit)
           (SCNEB2) (Beta-2 NACH)
          Length = 646

 Score = 96.3 bits (238), Expect = 2e-20
 Identities = 44/52 (84%), Positives = 44/52 (84%)
 Frame = -3

Query: 157 LAWIXXXXXXXXRPQYADPPPTVSELVEAHTNPGFQHDDGNHVTEDIPGTPP 2
           LAWI        RPQYADPPPTVSELVEAHTNPGFQHDDGNHVTEDIPGTPP
Sbjct: 575 LAWIRNRRQRRQRPQYADPPPTVSELVEAHTNPGFQHDDGNHVTEDIPGTPP 626



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>SCNNB_XENLA (P51169) Amiloride-sensitive sodium channel beta-subunit|
           (Epithelial Na+ channel beta subunit) (Beta ENaC)
           (Nonvoltage-gated sodium channel 1 beta subunit) (SCNEB)
           (Beta NaCH)
          Length = 647

 Score = 82.8 bits (203), Expect = 2e-16
 Identities = 38/52 (73%), Positives = 40/52 (76%)
 Frame = -3

Query: 157 LAWIXXXXXXXXRPQYADPPPTVSELVEAHTNPGFQHDDGNHVTEDIPGTPP 2
           LAW         RPQY+DPPPTVSELVEAHTN GFQHDDG+HV  DIPGTPP
Sbjct: 576 LAWSRNRRQRRKRPQYSDPPPTVSELVEAHTNSGFQHDDGDHVPVDIPGTPP 627



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>SCNNB_RABIT (O97742) Amiloride-sensitive sodium channel beta-subunit|
           (Epithelial Na+ channel beta subunit) (Beta ENaC)
           (Nonvoltage-gated sodium channel 1 beta subunit) (SCNEB)
           (Beta NaCH)
          Length = 641

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 10/48 (20%)
 Frame = -3

Query: 115 QYADPPPTVSELVEAHTNPGFQHDDGNHVTE----------DIPGTPP 2
           +YA PPPTV+ELVEAHTN GFQ D G+   +           IPGTPP
Sbjct: 571 RYAGPPPTVAELVEAHTNFGFQPDVGHRSPDAEAYPDEQALPIPGTPP 618



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>SCNNB_CANFA (Q95165) Amiloride-sensitive sodium channel beta-subunit|
           (Epithelial Na+ channel beta subunit) (Beta ENaC)
           (Nonvoltage-gated sodium channel 1 beta subunit) (SCNEB)
           (Beta NaCH) (Fragment)
          Length = 88

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 27/48 (56%), Positives = 30/48 (62%), Gaps = 10/48 (20%)
 Frame = -3

Query: 115 QYADPPPTVSELVEAHTNPGFQ-------HDDGNHVTED---IPGTPP 2
           +YA PPPTV+ELVEAHTN GFQ        D G +  E    IPGTPP
Sbjct: 41  RYAGPPPTVAELVEAHTNFGFQPDVARPGPDPGTYPDEQTLPIPGTPP 88



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>SCNNB_HUMAN (P51168) Amiloride-sensitive sodium channel beta-subunit|
           (Epithelial Na+ channel beta subunit) (Beta ENaC)
           (Nonvoltage-gated sodium channel 1 beta subunit) (SCNEB)
           (Beta NaCH) (ENaCB)
          Length = 640

 Score = 47.8 bits (112), Expect = 8e-06
 Identities = 27/47 (57%), Positives = 30/47 (63%), Gaps = 10/47 (21%)
 Frame = -3

Query: 112 YADPPPTVSELVEAHTNPGFQHD-------DGNHVTED---IPGTPP 2
           YA PPPTV+ELVEAHTN GFQ D        G + +E    IPGTPP
Sbjct: 571 YAGPPPTVAELVEAHTNFGFQPDTAPRSPNTGPYPSEQALPIPGTPP 617



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>SCNNB_RAT (P37090) Amiloride-sensitive sodium channel beta-subunit|
           (Epithelial Na+ channel beta subunit) (Beta ENaC)
           (Nonvoltage-gated sodium channel 1 beta subunit) (SCNEB)
           (Beta NaCH)
          Length = 638

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 25/47 (53%), Positives = 27/47 (57%), Gaps = 10/47 (21%)
 Frame = -3

Query: 112 YADPPPTVSELVEAHTNPGFQHDD----------GNHVTEDIPGTPP 2
           Y  PPPTV+ELVEAHTN GFQ D            +  T  IPGTPP
Sbjct: 569 YTGPPPTVAELVEAHTNFGFQPDTTSCRPNAEVYPDQQTLPIPGTPP 615



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>SCNNB_MOUSE (Q9WU38) Amiloride-sensitive sodium channel beta-subunit|
           (Epithelial Na+ channel beta subunit) (Beta ENaC)
           (Nonvoltage-gated sodium channel 1 beta subunit) (SCNEB)
           (Beta NaCH)
          Length = 638

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 25/47 (53%), Positives = 27/47 (57%), Gaps = 10/47 (21%)
 Frame = -3

Query: 112 YADPPPTVSELVEAHTNPGFQHDD----------GNHVTEDIPGTPP 2
           Y  PPPTV+ELVEAHTN GFQ D            +  T  IPGTPP
Sbjct: 569 YTGPPPTVAELVEAHTNFGFQPDTTSCRPHGEVYPDQQTLPIPGTPP 615



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>TNR7_HUMAN (P26842) Tumor necrosis factor receptor superfamily member 7|
           precursor (CD27L receptor) (T-cell activation antigen
           CD27) (T14)
          Length = 260

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 98  WWICVLRPLPSLSAVPDPR 154
           WW+CVL  L  LSA P P+
Sbjct: 7   WWLCVLGTLVGLSATPAPK 25



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>TMEPA_MOUSE (Q9D7R2) Transmembrane prostate androgen-induced protein (NEDD4 WW|
           domain-binding protein 4)
          Length = 260

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 103 PPPTVSELVEAHTNPGFQHDDGNHVTEDIPGT 8
           PPPT SE++  +    FQH   N  +  + GT
Sbjct: 206 PPPTYSEVIGHYPGSSFQHQQSNGPSSLLEGT 237


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,193,733
Number of Sequences: 219361
Number of extensions: 477294
Number of successful extensions: 1342
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of database: 80,573,946
effective HSP length: 28
effective length of database: 74,431,838
effective search space used: 1786364112
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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