ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22b18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BC059965.1| Xenopus laevis beta2 subunit of epithelial sodium... 309 1e-81
2emb|Y12000.1|XLESCBET2 X.laevis mRNA for epithelial sodium chann... 301 3e-79
3gb|BC077306.1| Xenopus laevis epithelial sodium channel, nonvolt... 206 1e-50
4gb|U25285.1|XLU25285 Xenopus laevis epithelial sodium channel, b... 206 1e-50
5ref|XM_425247.1| PREDICTED: Gallus gallus similar to Amiloride-s... 52 5e-04
6ref|XM_547092.2| PREDICTED: Canis familiaris epithelial amilorid... 52 5e-04
7emb|BX933558.2| Gallus gallus finished cDNA, clone ChEST670d24 52 5e-04
8gb|U68062.1|CFU68062 Canis familiaris epithelial amiloride-sensi... 52 5e-04
9emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 46 0.031
10emb|BX640427.1| Bordetella parapertussis strain 12822, complete ... 46 0.031
11ref|XM_612736.2| PREDICTED: Bos taurus similar to Amiloride-sens... 40 1.9
12gb|AC117826.10| Mus musculus chromosome 1, clone RP24-81K19, com... 40 1.9
13ref|NM_000336.1| Homo sapiens sodium channel, nonvoltage-gated 1... 40 1.9
14emb|X87159.1|HSSCNN1B H.sapiens mRNA for beta subunit of epithel... 40 1.9
15emb|AJ132109.1|OCU132109 Oryctolagus cuniculus mRNA for epitheli... 40 1.9
16gb|AC008915.11| Homo sapiens chromosome 16 clone CTD-2270L9, com... 40 1.9
17ref|NM_012648.1| Rattus norvegicus sodium channel, nonvoltage-ga... 40 1.9
18gb|BC036352.1| Homo sapiens sodium channel, nonvoltage-gated 1, ... 40 1.9
19gb|AC131992.8| Mus musculus chromosome 1, clone RP24-190B16, com... 40 1.9
20emb|X77932.1|RNENACB R.norvegicus mRNA for sodium channel, beta ... 40 1.9
21emb|AJ005393.2|HSJ005393 Homo sapiens SCNN1B gene, partial exon 13 40 1.9
22gb|U35175.1|RNU35175 Rattus norvegicus SHRSPHD epithelial sodium... 40 1.9
23gb|U35174.1|RNU35174 Rattus norvegicus WKY-1HD epithelial sodium... 40 1.9
24gb|L36593.1|HUMBETA Homo sapiens kidney epithelial sodium channe... 40 1.9
25gb|U16023.1|HSU16023 Human epithelial sodium channel beta subuni... 40 1.9
26ref|XM_548107.2| PREDICTED: Canis familiaris similar to type I h... 38 7.7
27ref|XM_797491.1| Trypanosoma cruzi strain CL Brener hypothetical... 38 7.7
28gb|BC044014.1| Xenopus laevis SWI/SNF related, matrix associated... 38 7.7
29emb|BX640415.1| Bordetella pertussis strain Tohama I, complete g... 38 7.7
30ref|NM_205116.1| Gallus gallus myosin binding protein C, cardiac... 38 7.7
31gb|AC115224.3| Homo sapiens BAC clone RP11-700N1 from 4, complet... 38 7.7
32dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.7
33dbj|AP005388.2| Oryza sativa (japonica cultivar-group) genomic D... 38 7.7
34dbj|D43697.1|CHKMYBPC Chicken mRNA for myosin binding protein C,... 38 7.7 
>gb|BC059965.1| Xenopus laevis beta2 subunit of epithelial sodium channel, mRNA (cDNA
            clone MGC:68552 IMAGE:4031337), complete cds
          Length = 2161

 Score =  309 bits (156), Expect = 1e-81
 Identities = 158/159 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    gaggaggagttccaggtatgtcctcggtcacatggtttccatcgtcatgctgaaagcctg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2022 gaggaggagttccaggtatgtcctcggtcacatggtttccatcgtcatgctgaaagcctg 1963

                                                                        
Query: 61   ggttggtgtgagcctccaccagctcagatacagtaggtggtggatctgcgtattgaggcc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1962 ggttggtgtgagcctccaccagctcagatacagtaggtggtggatctgcgtattgaggcc 1903

                                                   
Query: 121  gttgccttctttgtctgcggtncctgatccacgcgagaa 159
            ||||||||||||||||||||| |||||||||||||||||
Sbjct: 1902 gttgccttctttgtctgcggttcctgatccacgcgagaa 1864
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>emb|Y12000.1|XLESCBET2 X.laevis mRNA for epithelial sodium channel, beta 2 subunit
          Length = 2687

 Score =  301 bits (152), Expect = 3e-79
 Identities = 157/159 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1    gaggaggagttccaggtatgtcctcggtcacatggtttccatcgtcatgctgaaagcctg 60
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2007 gaggaggagttccaggtatgtcctcggtcacatggtttccatcgtcatgctggaagcctg 1948

                                                                        
Query: 61   ggttggtgtgagcctccaccagctcagatacagtaggtggtggatctgcgtattgaggcc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947 ggttggtgtgagcctccaccagctcagatacagtaggtggtggatctgcgtattgaggcc 1888

                                                   
Query: 121  gttgccttctttgtctgcggtncctgatccacgcgagaa 159
            ||||||||||||||||||||| |||||||||||||||||
Sbjct: 1887 gttgccttctttgtctgcggttcctgatccacgcgagaa 1849
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>gb|BC077306.1| Xenopus laevis epithelial sodium channel, nonvoltage-gated 1, beta,
            mRNA (cDNA clone MGC:80212 IMAGE:4970999), complete cds
          Length = 2349

 Score =  206 bits (104), Expect = 1e-50
 Identities = 145/159 (91%)
 Strand = Plus / Minus

                                                                        
Query: 1    gaggaggagttccaggtatgtcctcggtcacatggtttccatcgtcatgctgaaagcctg 60
            ||||||||||||||||||||||| ||| |||||| | ||| ||||||||||| |||||||
Sbjct: 2092 gaggaggagttccaggtatgtccacgggcacatgatctccgtcgtcatgctggaagcctg 2033

                                                                        
Query: 61   ggttggtgtgagcctccaccagctcagatacagtaggtggtggatctgcgtattgaggcc 120
            |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 2032 ggttggtgtgagcctccaccagctcagatacagtaggtggtggatctgagtactgaggcc 1973

                                                   
Query: 121  gttgccttctttgtctgcggtncctgatccacgcgagaa 159
            ||| ||||||||| ||||| | |||| |||| |||||||
Sbjct: 1972 gtttccttctttgcctgcgattcctgctccaggcgagaa 1934
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>gb|U25285.1|XLU25285 Xenopus laevis epithelial sodium channel, beta subunit (betaxENaC)
            mRNA, complete cds
          Length = 2286

 Score =  206 bits (104), Expect = 1e-50
 Identities = 145/159 (91%)
 Strand = Plus / Minus

                                                                        
Query: 1    gaggaggagttccaggtatgtcctcggtcacatggtttccatcgtcatgctgaaagcctg 60
            ||||||||||||||||||||||| ||| |||||| | ||| ||||||||||| |||||||
Sbjct: 2049 gaggaggagttccaggtatgtccacgggcacatgatctccgtcgtcatgctggaagcctg 1990

                                                                        
Query: 61   ggttggtgtgagcctccaccagctcagatacagtaggtggtggatctgcgtattgaggcc 120
             ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 1989 agttggtgtgagcctccaccagctcagatacagtaggtggtggatctgagtactgaggcc 1930

                                                   
Query: 121  gttgccttctttgtctgcggtncctgatccacgcgagaa 159
            ||| ||||||||| ||||||| |||| |||| |||||||
Sbjct: 1929 gtttccttctttgcctgcggttcctgctccaggcgagaa 1891
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>ref|XM_425247.1| PREDICTED: Gallus gallus similar to Amiloride-sensitive sodium
            channel beta-subunit (Epithelial Na+ channel beta
            subunit) (Beta ENaC) (Nonvoltage-gated sodium channel 1
            beta subunit) (SCNEB) (Beta NaCH) (ENaCB) (LOC427673),
            mRNA
          Length = 3264

 Score = 52.0 bits (26), Expect = 5e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 48   tgctgaaagcctgggttggtgtgagcctccaccagctc 85
            ||||| |||||  |||||||||||||||||||||||||
Sbjct: 2741 tgctggaagcccaggttggtgtgagcctccaccagctc 2704
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>ref|XM_547092.2| PREDICTED: Canis familiaris epithelial amiloride-sensitive sodium
            channel beta subunit (SCNN1B), mRNA
          Length = 1926

 Score = 52.0 bits (26), Expect = 5e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 62   gttggtgtgagcctccaccagctcag 87
            ||||||||||||||||||||||||||
Sbjct: 1764 gttggtgtgagcctccaccagctcag 1739
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>emb|BX933558.2| Gallus gallus finished cDNA, clone ChEST670d24
          Length = 1494

 Score = 52.0 bits (26), Expect = 5e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 48   tgctgaaagcctgggttggtgtgagcctccaccagctc 85
            ||||| |||||  |||||||||||||||||||||||||
Sbjct: 1204 tgctggaagcccaggttggtgtgagcctccaccagctc 1167
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>gb|U68062.1|CFU68062 Canis familiaris epithelial amiloride-sensitive sodium channel beta
           subunit (SCNN1B) gene, partial cds
          Length = 264

 Score = 52.0 bits (26), Expect = 5e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 62  gttggtgtgagcctccaccagctcag 87
           ||||||||||||||||||||||||||
Sbjct: 174 gttggtgtgagcctccaccagctcag 149
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>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 46.1 bits (23), Expect = 0.031
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 103    gatctgcgtattgaggccgttgc 125
              |||||||||||||||||||||||
Sbjct: 294936 gatctgcgtattgaggccgttgc 294914
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>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 46.1 bits (23), Expect = 0.031
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 103    gatctgcgtattgaggccgttgc 125
              |||||||||||||||||||||||
Sbjct: 207262 gatctgcgtattgaggccgttgc 207240
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>ref|XM_612736.2| PREDICTED: Bos taurus similar to Amiloride-sensitive sodium channel
            beta-subunit (Epithelial Na+ channel beta subunit) (Beta
            ENaC) (Nonvoltage-gated sodium channel 1 beta subunit)
            (SCNEB) (Beta NaCH) (ENaCB) (LOC533355), mRNA
          Length = 2378

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 62   gttggtgtgagcctccaccagctc 85
            ||||||||| ||||||||||||||
Sbjct: 1764 gttggtgtgggcctccaccagctc 1741
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>gb|AC117826.10| Mus musculus chromosome 1, clone RP24-81K19, complete sequence
          Length = 227953

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     agcctccaccagctcagata 90
              ||||||||||||||||||||
Sbjct: 202085 agcctccaccagctcagata 202066
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>ref|NM_000336.1| Homo sapiens sodium channel, nonvoltage-gated 1, beta (Liddle
            syndrome) (SCNN1B), mRNA
          Length = 2564

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 62   gttggtgtgagcctccaccagctc 85
            ||||||||| ||||||||||||||
Sbjct: 1888 gttggtgtgggcctccaccagctc 1865
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>emb|X87159.1|HSSCNN1B H.sapiens mRNA for beta subunit of epithelial amiloride-sensitive
            sodium channel
          Length = 2564

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 62   gttggtgtgagcctccaccagctc 85
            ||||||||| ||||||||||||||
Sbjct: 1888 gttggtgtgggcctccaccagctc 1865
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>emb|AJ132109.1|OCU132109 Oryctolagus cuniculus mRNA for epithelial sodium channel, beta
            subunit
          Length = 2495

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 62   gttggtgtgagcctccaccagctc 85
            ||||||||| ||||||||||||||
Sbjct: 1800 gttggtgtgcgcctccaccagctc 1777
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>gb|AC008915.11| Homo sapiens chromosome 16 clone CTD-2270L9, complete sequence
          Length = 135873

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 62    gttggtgtgagcctccaccagctc 85
             ||||||||| ||||||||||||||
Sbjct: 48950 gttggtgtgggcctccaccagctc 48927
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>ref|NM_012648.1| Rattus norvegicus sodium channel, nonvoltage-gated 1 beta (Scnn1b),
            mRNA
          Length = 2445

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 62   gttggtgtgagcctccaccagctc 85
            ||||||||| ||||||||||||||
Sbjct: 1810 gttggtgtgggcctccaccagctc 1787
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>gb|BC036352.1| Homo sapiens sodium channel, nonvoltage-gated 1, beta (Liddle
            syndrome), mRNA (cDNA clone MGC:34556 IMAGE:5178288),
            complete cds
          Length = 2605

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 62   gttggtgtgagcctccaccagctc 85
            ||||||||| ||||||||||||||
Sbjct: 1896 gttggtgtgggcctccaccagctc 1873
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>gb|AC131992.8| Mus musculus chromosome 1, clone RP24-190B16, complete sequence
          Length = 163820

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     agcctccaccagctcagata 90
              ||||||||||||||||||||
Sbjct: 117344 agcctccaccagctcagata 117325
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>emb|X77932.1|RNENACB R.norvegicus mRNA for sodium channel, beta subunit
          Length = 2462

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 62   gttggtgtgagcctccaccagctc 85
            ||||||||| ||||||||||||||
Sbjct: 1827 gttggtgtgggcctccaccagctc 1804
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>emb|AJ005393.2|HSJ005393 Homo sapiens SCNN1B gene, partial exon 13
          Length = 646

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 62  gttggtgtgagcctccaccagctc 85
           ||||||||| ||||||||||||||
Sbjct: 265 gttggtgtgggcctccaccagctc 242
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>gb|U35175.1|RNU35175 Rattus norvegicus SHRSPHD epithelial sodium channel, beta subunit
            (rEnac) mRNA, complete cds
          Length = 2221

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 62   gttggtgtgagcctccaccagctc 85
            ||||||||| ||||||||||||||
Sbjct: 1765 gttggtgtgggcctccaccagctc 1742
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>gb|U35174.1|RNU35174 Rattus norvegicus WKY-1HD epithelial sodium channel, beta subunit
            (rEnac) mRNA, complete cds
          Length = 2221

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 62   gttggtgtgagcctccaccagctc 85
            ||||||||| ||||||||||||||
Sbjct: 1765 gttggtgtgggcctccaccagctc 1742
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>gb|L36593.1|HUMBETA Homo sapiens kidney epithelial sodium channel beta subunit (beta
            hENaC) mRNA, complete cds
          Length = 1923

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 62   gttggtgtgagcctccaccagctc 85
            ||||||||| ||||||||||||||
Sbjct: 1761 gttggtgtgggcctccaccagctc 1738
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>gb|U16023.1|HSU16023 Human epithelial sodium channel beta subunit gene, partial cds
          Length = 427

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 62  gttggtgtgagcctccaccagctc 85
           ||||||||| ||||||||||||||
Sbjct: 265 gttggtgtgggcctccaccagctc 242
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>ref|XM_548107.2| PREDICTED: Canis familiaris similar to type I hair keratin 6
           (LOC490984), mRNA
          Length = 1404

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 62  gttggtgtgagcctccaccagct 84
           |||||||| ||||||||||||||
Sbjct: 591 gttggtgtcagcctccaccagct 569
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>ref|XM_797491.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053430061.9) partial mRNA
          Length = 1163

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 91   cagtaggtggtggatctgcgtat 113
            |||||||||||| ||||||||||
Sbjct: 1139 cagtaggtggtgcatctgcgtat 1161
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>gb|BC044014.1| Xenopus laevis SWI/SNF related, matrix associated, actin dependent
            regulator of chromatin, subfamily c, member 1, mRNA (cDNA
            clone MGC:53976 IMAGE:5570983), complete cds
          Length = 3786

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 67   tgtgagcctccaccagctc 85
            |||||||||||||||||||
Sbjct: 2525 tgtgagcctccaccagctc 2507
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>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12
          Length = 347071

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 103   gatctgcgtattgaggccgttgc 125
             ||||||||| |||||||||||||
Sbjct: 70764 gatctgcgtgttgaggccgttgc 70742
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>ref|NM_205116.1| Gallus gallus myosin binding protein C, cardiac (MYBPC3), mRNA
          Length = 5098

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 85   cagatacagtaggtggtggatct 107
            ||||||||||||||| |||||||
Sbjct: 2172 cagatacagtaggtgttggatct 2150
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>gb|AC115224.3| Homo sapiens BAC clone RP11-700N1 from 4, complete sequence
          Length = 63459

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 37    ttccatcgtcatgctgaaa 55
             |||||||||||||||||||
Sbjct: 43783 ttccatcgtcatgctgaaa 43801
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 71       agcctccaccagctcagat 89
                |||||||||||||||||||
Sbjct: 19165989 agcctccaccagctcagat 19166007
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>dbj|AP005388.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0086F04
          Length = 163579

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 71    agcctccaccagctcagat 89
             |||||||||||||||||||
Sbjct: 88354 agcctccaccagctcagat 88372
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>dbj|D43697.1|CHKMYBPC Chicken mRNA for myosin binding protein C, complete cds
          Length = 5098

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 85   cagatacagtaggtggtggatct 107
            ||||||||||||||| |||||||
Sbjct: 2172 cagatacagtaggtgttggatct 2150


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,111,741
Number of Sequences: 3902068
Number of extensions: 1111741
Number of successful extensions: 92815
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92753
Number of HSP's gapped (non-prelim): 62
length of query: 159
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 137
effective length of database: 17,147,199,772
effective search space: 2349166368764
effective search space used: 2349166368764
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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