>RAD50_PYRAB (Q9UZC8) DNA double-strand break repair rad50 ATPase|
          Length = 880

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
 Frame = -2

Query: 442 GRKQGTSLKAPSLP-STESFVCKIRLAEAFISLEHPLVTKLRQEKIDYRAIKDMACEYQQ 266
           GRK+G   K   +  S E    KI   E  +      + KL++++ +YR +K    EY+ 
Sbjct: 256 GRKKGLEEKIVQIERSIEEKKAKISELEEIVKD----IPKLQEKEKEYRKLKGFRDEYES 311

Query: 265 MLKLLRKAPFLGRWRAKPRSVDSFI 191
            L+ L K   L +W ++ ++++  I
Sbjct: 312 KLRRLEKE--LSKWESELKAIEEVI 334

>YIM0_YEAST (P40475) Hypothetical 61.8 kDa protein in KGD1-SIM1 intergenic|
           region
          Length = 563

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 143 GWFLKFLDFTPILAVLCTNSF-SLFVACVLLHNT 45
           GW +     TP+ AVLCT++F SLF  C+L  +T
Sbjct: 437 GWCISVK--TPLAAVLCTSAFASLFSNCILTFST 468

>FTSH_RICPR (Q9ZEA2) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 637

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +3

Query: 177 HHHGTINESTDLGLARHLPKNGAFLRSLSICWYSQAISLIAR*S--IFS*RNFVTNGCSS 350
           H    I     LG+ + LP+   + ++      S A+ +  R +  I   RN VT+G SS
Sbjct: 435 HKATIIPRGNALGMVQRLPETDEYSQNREQMESSIAVYMAGRVAEEIIFGRNKVTSGASS 494

Query: 351 DMKASANL 374
           D+K + N+
Sbjct: 495 DIKGATNI 502

>FTSH_RICCN (Q92JJ9) Cell division protein ftsH homolog (EC 3.4.24.-)|
          Length = 637

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +3

Query: 177 HHHGTINESTDLGLARHLPKNGAFLRSLSICWYSQAISLIAR*S--IFS*RNFVTNGCSS 350
           H    I     LG+ + LP+   + ++      S A+ +  R +  I   RN VT+G SS
Sbjct: 435 HKATIIPRGNALGMVQRLPETDEYSQNREQMESSIAVYMAGRVAEEIIFGRNKVTSGASS 494

Query: 351 DMKASANL 374
           D+K + N+
Sbjct: 495 DIKGATNI 502


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,845,529
Number of Sequences: 219361
Number of extensions: 1581400
Number of successful extensions: 3371
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3371
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)