ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21m15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 109 1e-20
2dbj|AK106642.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 2e-19
3emb|AL606641.3|OSJN00074 Oryza sativa genomic DNA, chromosome 4,... 101 3e-18
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
5ref|XM_474404.1| Oryza sativa (japonica cultivar-group), predic... 96 2e-16
6dbj|AK105871.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 2e-16
7dbj|AK071538.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 2e-16
8gb|AC022399.15| Homo sapiens chromosome 10 clone RP11-4G18, comp... 46 0.13
9gb|AC080106.6| Homo sapiens chromosome 11, clone RP11-62J13, com... 46 0.13
10dbj|AP000893.5| Homo sapiens genomic DNA, chromosome 11q, clone:... 46 0.13
11dbj|AP001646.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 46 0.13
12gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete ... 42 2.1
13gb|AC103405.14| Mus musculus chromosome 19, clone RP23-98J4, com... 42 2.1
14gb|AC102751.14| Mus musculus chromosome 19, clone RP24-531N3, co... 42 2.1
15gb|AE006156.1| Pasteurella multocida subsp. multocida str. Pm70 ... 42 2.1
16emb|AL954342.10| Human DNA sequence from clone RP11-343L13 on ch... 42 2.1
17emb|AL627429.8| Human DNA sequence from clone RP11-361G9 on chro... 42 2.1
18emb|AL359508.13| Human DNA sequence from clone RP11-267K7 on chr... 42 2.1
19gb|AF336797.2|AF336797 Homo sapiens small-conductance calcium-ac... 42 2.1
20dbj|AK086872.1| Mus musculus 0 day neonate lung cDNA, RIKEN full... 42 2.1
21gb|L42023.1| Haemophilus influenzae Rd KW20, complete genome 42 2.1
22gb|AC005224.1|AC005224 Homo sapiens chromosome 17, clone hRPK.21... 42 2.1
23gb|AC124614.11| Mus musculus chromosome 10, clone RP24-417L12, c... 40 8.2
24gb|AC124025.2| Mus musculus chromosome X clone RP21-108Q19 map q... 40 8.2
25gb|AC125060.4| Mus musculus BAC clone RP23-406B22 from chromosom... 40 8.2
26gb|AC129310.6| Mus musculus BAC clone RP24-348D18 from chromosom... 40 8.2
27gb|AC111012.3| Mus musculus BAC clone RP24-146N3 from 8, complet... 40 8.2
28emb|AL589862.28| Human DNA sequence from clone GS1-165F21 on chr... 40 8.2
29emb|AL356452.12| Human DNA sequence from clone RP11-562L19 on ch... 40 8.2
30emb|AL031000.1|HS795G23 Human DNA sequence from clone RP4-795G23... 40 8.2
31emb|AL592185.35| Mouse DNA sequence from clone RP23-341J22 on ch... 40 8.2
32emb|BX571948.8| Zebrafish DNA sequence from clone DKEY-185P13 in... 40 8.2
33emb|AL671860.6| Mouse DNA sequence from clone RP23-252K7 on chro... 40 8.2
34emb|AL928660.4| Zebrafish DNA sequence from clone CH211-257L15, ... 40 8.2
35emb|X65201.1|MNPVE6 Mastomys natalensis Papillomavirus E6 gene 40 8.2
36gb|AE001439.1| Helicobacter pylori J99, complete genome 40 8.2
37gb|AE000511.1| Helicobacter pylori 26695, complete genome 40 8.2
38gb|AC131680.4| Mus musculus BAC clone RP23-346F8 from 8, complet... 40 8.2
39gb|U01834.1|MRU01834 Multimammate rat papillomavirus, complete g... 40 8.2
40emb|AL929443.4| Mouse DNA sequence from clone RP23-467A7 on chro... 40 8.2 
>emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete
             sequence
          Length = 84361

 Score =  109 bits (55), Expect = 1e-20
 Identities = 124/147 (84%)
 Strand = Plus / Minus

                                                                         
Query: 377   cttgcagacaaatgactcggtggagggtaaggatggtgcctttaaagatgtgccttgttt 436
             ||||||||  |||||||| ||||| ||| || ||| ||||||| ||||||| || |||||
Sbjct: 34233 cttgcagagcaatgactcagtggatggtgagcatgctgcctttgaagatgtaccctgttt 34174

                                                                         
Query: 437   cctcccagttgttcctaaaagaacttcatgcaaaccagatttattctggcatattgagta 496
              ||||||||||||||||| | ||||||||| ||||||||||| |||  |||||| |||||
Sbjct: 34173 tctcccagttgttcctaagacaacttcatgaaaaccagatttgttccagcatatcgagta 34114

                                        
Query: 497   cctaataaaacattaatgacaaagcta 523
             |||| ||||| || |||  ||||||||
Sbjct: 34113 cctagtaaaatataaattgcaaagcta 34087



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                       
Query: 234   aaaaatggagcctttctaagaagcttaagcatctgctggtactcacaagccatatcct 291
             |||||||||||||| |||||||||| |||  |||||||||| |||  |||||||||||
Sbjct: 34636 aaaaatggagccttcctaagaagctcaagtgtctgctggtattcatgagccatatcct 34579
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>dbj|AK106642.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-E06, full
            insert sequence
          Length = 2214

 Score =  105 bits (53), Expect = 2e-19
 Identities = 158/193 (81%)
 Strand = Plus / Minus

                                                                        
Query: 331  tgactaatggatgttcaagtgatatgaaggcctctgccaatcttatcttgcagacaaatg 390
            ||||||||||||||||||   | |  ||||| |||  ||| ||| |||||||||  ||||
Sbjct: 1175 tgactaatggatgttcaatcaacacaaaggcttctagcaaccttctcttgcagagcaatg 1116

                                                                        
Query: 391  actcggtggagggtaaggatggtgcctttaaagatgtgccttgtttcctcccagttgttc 450
            |||| ||||| ||| || ||| ||||||| ||||||| || ||||| |||||||||||||
Sbjct: 1115 actcagtggatggtgagcatgctgcctttgaagatgtaccctgttttctcccagttgttc 1056

                                                                        
Query: 451  ctaaaagaacttcatgcaaaccagatttattctggcatattgagtacctaataaaacatt 510
            |||| | ||||||||| ||||| ||||| |||  |||||| ||||||||| ||||| || 
Sbjct: 1055 ctaagacaacttcatgaaaaccggatttgttccagcatatcgagtacctagtaaaatata 996

                         
Query: 511  aatgacaaagcta 523
            |||  ||||||||
Sbjct: 995  aattgcaaagcta 983



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 213  ggcttagcacgccatctgcctaaaaatggagcctttctaagaagcttaagcatctgctgg 272
            |||||||||| ||| | ||  |||||||||||||| || ||||||| |||  ||||||||
Sbjct: 1293 ggcttagcaccccaccggctaaaaaatggagccttcctgagaagctcaagtgtctgctgg 1234

                                
Query: 273  tactcacaagccatatcctt 292
            || |||  ||||||||||||
Sbjct: 1233 tattcatgagccatatcctt 1214
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>emb|AL606641.3|OSJN00074 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032F06,
              complete sequence
          Length = 148023

 Score =  101 bits (51), Expect = 3e-18
 Identities = 123/147 (83%)
 Strand = Plus / Minus

                                                                          
Query: 377    cttgcagacaaatgactcggtggagggtaaggatggtgcctttaaagatgtgccttgttt 436
              ||||||||  |||||||| ||||| ||| || ||| ||||||| ||||||| || |||||
Sbjct: 136415 cttgcagagcaatgactcagtggatggtgagcatgctgcctttgaagatgtaccctgttt 136356

                                                                          
Query: 437    cctcccagttgttcctaaaagaacttcatgcaaaccagatttattctggcatattgagta 496
               ||||||||||||||||| | ||||||||| ||||| ||||| |||  |||||| |||||
Sbjct: 136355 tctcccagttgttcctaagacaacttcatgaaaaccggatttgttccagcatatcgagta 136296

                                         
Query: 497    cctaataaaacattaatgacaaagcta 523
              |||| ||||| || |||  ||||||||
Sbjct: 136295 cctagtaaaatataaattgcaaagcta 136269



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                          
Query: 213    ggcttagcacgccatctgcctaaaaatggagcctttctaagaagcttaagcatctgctgg 272
              |||||||||| ||| | ||  |||||||||||||| || ||||||| |||  ||||||||
Sbjct: 136799 ggcttagcactccaccggctaaaaaatggagccttcctgagaagctcaagtgtctgctgg 136740

                                 
Query: 273    tactcacaagccatatcct 291
              || |||  |||||||||||
Sbjct: 136739 tattcatgagccatatcct 136721
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  101 bits (51), Expect = 3e-18
 Identities = 123/147 (83%)
 Strand = Plus / Minus

                                                                            
Query: 377      cttgcagacaaatgactcggtggagggtaaggatggtgcctttaaagatgtgccttgttt 436
                ||||||||  |||||||| ||||| ||| || ||| ||||||| ||||||| || |||||
Sbjct: 34930302 cttgcagagcaatgactcagtggatggtgagcatgctgcctttgaagatgtaccctgttt 34930243

                                                                            
Query: 437      cctcccagttgttcctaaaagaacttcatgcaaaccagatttattctggcatattgagta 496
                 ||||||||||||||||| | ||||||||| ||||| ||||| |||  |||||| |||||
Sbjct: 34930242 tctcccagttgttcctaagacaacttcatgaaaaccggatttgttccagcatatcgagta 34930183

                                           
Query: 497      cctaataaaacattaatgacaaagcta 523
                |||| ||||| || |||  ||||||||
Sbjct: 34930182 cctagtaaaatataaattgcaaagcta 34930156



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                            
Query: 213      ggcttagcacgccatctgcctaaaaatggagcctttctaagaagcttaagcatctgctgg 272
                |||||||||| ||| | ||  |||||||||||||| || ||||||| |||  ||||||||
Sbjct: 34930686 ggcttagcactccaccggctaaaaaatggagccttcctgagaagctcaagtgtctgctgg 34930627

                                   
Query: 273      tactcacaagccatatcct 291
                || |||  |||||||||||
Sbjct: 34930626 tattcatgagccatatcct 34930608
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>ref|XM_474404.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1116

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 138/168 (82%)
 Strand = Plus / Minus

                                                                       
Query: 331 tgactaatggatgttcaagtgatatgaaggcctctgccaatcttatcttgcagacaaatg 390
           ||||||||||||||||||   | |  ||||| |||  ||| ||| |||||||||  ||||
Sbjct: 964 tgactaatggatgttcaatcaacacaaaggcttctagcaaccttctcttgcagagcaatg 905

                                                                       
Query: 391 actcggtggagggtaaggatggtgcctttaaagatgtgccttgtttcctcccagttgttc 450
           |||| ||||| ||| || ||| ||||||| ||||||| || ||||| |||||||||||||
Sbjct: 904 actcagtggatggtgagcatgctgcctttgaagatgtaccctgttttctcccagttgttc 845

                                                           
Query: 451 ctaaaagaacttcatgcaaaccagatttattctggcatattgagtacc 498
           |||| | ||||||||| ||||| ||||| |||  |||||| |||||||
Sbjct: 844 ctaagacaacttcatgaaaaccggatttgttccagcatatcgagtacc 797



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 213  ggcttagcacgccatctgcctaaaaatggagcctttctaagaagcttaagcatctgctgg 272
            |||||||||| ||| | ||  |||||||||||||| || ||||||| |||  ||||||||
Sbjct: 1082 ggcttagcactccaccggctaaaaaatggagccttcctgagaagctcaagtgtctgctgg 1023

                                
Query: 273  tactcacaagccatatcctt 292
            || |||  ||||||||||||
Sbjct: 1022 tattcatgagccatatcctt 1003
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>dbj|AK105871.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-B01, full
            insert sequence
          Length = 1666

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 138/168 (82%)
 Strand = Plus / Minus

                                                                        
Query: 331  tgactaatggatgttcaagtgatatgaaggcctctgccaatcttatcttgcagacaaatg 390
            ||||||||||||||||||   | |  ||||| |||  ||| ||| |||||||||  ||||
Sbjct: 1262 tgactaatggatgttcaatcaacacaaaggcttctagcaaccttctcttgcagagcaatg 1203

                                                                        
Query: 391  actcggtggagggtaaggatggtgcctttaaagatgtgccttgtttcctcccagttgttc 450
            |||| ||||| ||| || ||| ||||||| ||||||| || ||||| |||||||||||||
Sbjct: 1202 actcagtggatggtgagcatgctgcctttgaagatgtaccctgttttctcccagttgttc 1143

                                                            
Query: 451  ctaaaagaacttcatgcaaaccagatttattctggcatattgagtacc 498
            |||| | ||||||||| ||||| ||||| |||  |||||| |||||||
Sbjct: 1142 ctaagacaacttcatgaaaaccggatttgttccagcatatcgagtacc 1095



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 213  ggcttagcacgccatctgcctaaaaatggagcctttctaagaagcttaagcatctgctgg 272
            |||||||||| ||| | ||  |||||||||||||| || ||||||| |||  ||||||||
Sbjct: 1380 ggcttagcactccaccggctaaaaaatggagccttcctgagaagctcaagtgtctgctgg 1321

                                
Query: 273  tactcacaagccatatcctt 292
            || |||  ||||||||||||
Sbjct: 1320 tattcatgagccatatcctt 1301
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>dbj|AK071538.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099G11, full
            insert sequence
          Length = 1384

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 138/168 (82%)
 Strand = Plus / Minus

                                                                        
Query: 331  tgactaatggatgttcaagtgatatgaaggcctctgccaatcttatcttgcagacaaatg 390
            ||||||||||||||||||   | |  ||||| |||  ||| ||| |||||||||  ||||
Sbjct: 1003 tgactaatggatgttcaatcaacacaaaggcttctagcaaccttctcttgcagagcaatg 944

                                                                        
Query: 391  actcggtggagggtaaggatggtgcctttaaagatgtgccttgtttcctcccagttgttc 450
            |||| ||||| ||| || ||| ||||||| ||||||| || ||||| |||||||||||||
Sbjct: 943  actcagtggatggtgagcatgctgcctttgaagatgtaccctgttttctcccagttgttc 884

                                                            
Query: 451  ctaaaagaacttcatgcaaaccagatttattctggcatattgagtacc 498
            |||| | ||||||||| ||||| ||||| |||  |||||| |||||||
Sbjct: 883  ctaagacaacttcatgaaaaccggatttgttccagcatatcgagtacc 836



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 213  ggcttagcacgccatctgcctaaaaatggagcctttctaagaagcttaagcatctgctgg 272
            |||||||||| ||| | ||  |||||||||||||| || ||||||| |||  ||||||||
Sbjct: 1121 ggcttagcactccaccggctaaaaaatggagccttcctgagaagctcaagtgtctgctgg 1062

                                
Query: 273  tactcacaagccatatcctt 292
            || |||  ||||||||||||
Sbjct: 1061 tattcatgagccatatcctt 1042
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>gb|AC022399.15| Homo sapiens chromosome 10 clone RP11-4G18, complete sequence
          Length = 173064

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 126   aaacttcaagaaccagcctctgc 148
             |||||||||||||||||||||||
Sbjct: 58581 aaacttcaagaaccagcctctgc 58603
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>gb|AC080106.6| Homo sapiens chromosome 11, clone RP11-62J13, complete sequence
          Length = 157637

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 126   aaacttcaagaaccagcctctgc 148
             |||||||||||||||||||||||
Sbjct: 31983 aaacttcaagaaccagcctctgc 32005
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>dbj|AP000893.5| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-659G9, complete
             sequence
          Length = 198024

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 126   aaacttcaagaaccagcctctgc 148
             |||||||||||||||||||||||
Sbjct: 58579 aaacttcaagaaccagcctctgc 58601
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>dbj|AP001646.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-718B12, complete
              sequence
          Length = 182329

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 126    aaacttcaagaaccagcctctgc 148
              |||||||||||||||||||||||
Sbjct: 151337 aaacttcaagaaccagcctctgc 151359
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>gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete genome
          Length = 1913428

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 542     caaccaaagaatggtgcatga 562
               |||||||||||||||||||||
Sbjct: 1122160 caaccaaagaatggtgcatga 1122140
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>gb|AC103405.14| Mus musculus chromosome 19, clone RP23-98J4, complete sequence
          Length = 227074

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 162   acctcaagatctggtcatcac 182
             |||||||||||||||||||||
Sbjct: 21964 acctcaagatctggtcatcac 21944
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>gb|AC102751.14| Mus musculus chromosome 19, clone RP24-531N3, complete sequence
          Length = 178150

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 162    acctcaagatctggtcatcac 182
              |||||||||||||||||||||
Sbjct: 174713 acctcaagatctggtcatcac 174693
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>gb|AE006156.1| Pasteurella multocida subsp. multocida str. Pm70 section 123 of 204 of
             the complete genome
          Length = 13495

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 542   caaccaaagaatggtgcatga 562
             |||||||||||||||||||||
Sbjct: 11702 caaccaaagaatggtgcatga 11682
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>emb|AL954342.10| Human DNA sequence from clone RP11-343L13 on chromosome 1 Contains part
             of the KCNN3 gene for potassium intermediate/small
             conductance calcium-activated channel, subfamily N, member
             3, complete sequence
          Length = 28342

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 355   tgaaggcctctgccaatctta 375
             |||||||||||||||||||||
Sbjct: 10620 tgaaggcctctgccaatctta 10640
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>emb|AL627429.8| Human DNA sequence from clone RP11-361G9 on chromosome 10 Contains part
             of the gene for a novel NHL repeat domain containing
             protein (FLJ33312, FLJ25621), complete sequence
          Length = 23418

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 421   aagatgtgccttgtttcctcc 441
             |||||||||||||||||||||
Sbjct: 18337 aagatgtgccttgtttcctcc 18317
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>emb|AL359508.13| Human DNA sequence from clone RP11-267K7 on chromosome 10, complete
             sequence
          Length = 60298

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 245   ctttctaagaagcttaagcat 265
             |||||||||||||||||||||
Sbjct: 49626 ctttctaagaagcttaagcat 49606
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>gb|AF336797.2|AF336797 Homo sapiens small-conductance calcium-activated potassium channel
              (KCNN3) gene, complete cds
          Length = 163217

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 355    tgaaggcctctgccaatctta 375
              |||||||||||||||||||||
Sbjct: 102479 tgaaggcctctgccaatctta 102459
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>dbj|AK086872.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched
            library, clone:E030007B21 product:unclassifiable, full
            insert sequence
          Length = 2098

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 162  acctcaagatctggtcatcac 182
            |||||||||||||||||||||
Sbjct: 1789 acctcaagatctggtcatcac 1769
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>gb|L42023.1| Haemophilus influenzae Rd KW20, complete genome
          Length = 1830138

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 542     caaccaaagaatggtgcatga 562
               |||||||||||||||||||||
Sbjct: 1065917 caaccaaagaatggtgcatga 1065897
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>gb|AC005224.1|AC005224 Homo sapiens chromosome 17, clone hRPK.214_O_1, complete sequence
          Length = 166687

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 106   aaaattggggtgaaatcaaga 126
             |||||||||||||||||||||
Sbjct: 62819 aaaattggggtgaaatcaaga 62799
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>gb|AC124614.11| Mus musculus chromosome 10, clone RP24-417L12, complete sequence
          Length = 173306

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 416   ctttaaagatgtgccttgtttcct 439
             ||||||| ||||||||||||||||
Sbjct: 46175 ctttaaatatgtgccttgtttcct 46198
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>gb|AC124025.2| Mus musculus chromosome X clone RP21-108Q19 map qA7.2, complete sequence
          Length = 145632

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    cttcaagaaccagcctctgc 148
              ||||||||||||||||||||
Sbjct: 103580 cttcaagaaccagcctctgc 103561
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>gb|AC125060.4| Mus musculus BAC clone RP23-406B22 from chromosome 10, complete
             sequence
          Length = 178936

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 416   ctttaaagatgtgccttgtttcct 439
             ||||||| ||||||||||||||||
Sbjct: 25904 ctttaaatatgtgccttgtttcct 25881
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>gb|AC129310.6| Mus musculus BAC clone RP24-348D18 from chromosome 8, complete sequence
          Length = 130946

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    gcacacatgctacaaataag 78
             ||||||||||||||||||||
Sbjct: 54979 gcacacatgctacaaataag 54960
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>gb|AC111012.3| Mus musculus BAC clone RP24-146N3 from 8, complete sequence
          Length = 155637

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    gcacacatgctacaaataag 78
             ||||||||||||||||||||
Sbjct: 10896 gcacacatgctacaaataag 10877
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>emb|AL589862.28| Human DNA sequence from clone GS1-165F21 on chromosome 10 Contains the 5'
              end of the PAX2 gene for paired box gene 2 and fifteen CpG
              islands, complete sequence
          Length = 187101

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 1      tagggctttataggtttgttatag 24
              |||||||||||||| |||||||||
Sbjct: 147156 tagggctttataggattgttatag 147179
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>emb|AL356452.12| Human DNA sequence from clone RP11-562L19 on chromosome 13, complete
             sequence
          Length = 81586

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 421   aagatgtgccttgtttcctc 440
             ||||||||||||||||||||
Sbjct: 26718 aagatgtgccttgtttcctc 26699
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>emb|AL031000.1|HS795G23 Human DNA sequence from clone RP4-795G23 on chromosome Xq13.1-21.1
              Contains the TBX22 gene for T-box 22, complete sequence
          Length = 132029

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 416    ctttaaagatgtgccttgtt 435
              ||||||||||||||||||||
Sbjct: 131899 ctttaaagatgtgccttgtt 131880
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>emb|AL592185.35| Mouse DNA sequence from clone RP23-341J22 on chromosome 11 Contains a
             novel gene, the Nos2 gene for inducible macrophage nitric
             oxide synthase 2 and the 3' end of the Lgals9 gene for
             soluble galactose binding lectin 9, complete sequence
          Length = 178443

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 536   atagttcaaccaaagaatgg 555
             ||||||||||||||||||||
Sbjct: 52997 atagttcaaccaaagaatgg 53016
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>emb|BX571948.8| Zebrafish DNA sequence from clone DKEY-185P13 in linkage group 22,
             complete sequence
          Length = 184751

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 564   gatactgtcagagcaaaatacaaa 587
             |||||||||||||||||| |||||
Sbjct: 84224 gatactgtcagagcaaaacacaaa 84247
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>emb|AL671860.6| Mouse DNA sequence from clone RP23-252K7 on chromosome X, complete
             sequence
          Length = 185369

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   cttcaagaaccagcctctgc 148
             ||||||||||||||||||||
Sbjct: 43300 cttcaagaaccagcctctgc 43281
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>emb|AL928660.4| Zebrafish DNA sequence from clone CH211-257L15, complete sequence
          Length = 165487

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 496    acctaataaaacattaatga 515
              ||||||||||||||||||||
Sbjct: 164126 acctaataaaacattaatga 164107
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>emb|X65201.1|MNPVE6 Mastomys natalensis Papillomavirus E6 gene
          Length = 624

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 555 gtgcatgaagatactgtcag 574
           ||||||||||||||||||||
Sbjct: 510 gtgcatgaagatactgtcag 529
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>gb|AE001439.1| Helicobacter pylori J99, complete genome
          Length = 1643831

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 585    aaaggagttcaaaatggcaa 604
              ||||||||||||||||||||
Sbjct: 705688 aaaggagttcaaaatggcaa 705669
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>gb|AE000511.1| Helicobacter pylori 26695, complete genome
          Length = 1667867

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 585    aaaggagttcaaaatggcaa 604
              ||||||||||||||||||||
Sbjct: 747941 aaaggagttcaaaatggcaa 747960
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>gb|AC131680.4| Mus musculus BAC clone RP23-346F8 from 8, complete sequence
          Length = 198162

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    gcacacatgctacaaataag 78
             ||||||||||||||||||||
Sbjct: 29345 gcacacatgctacaaataag 29364
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>gb|U01834.1|MRU01834 Multimammate rat papillomavirus, complete genome
          Length = 7687

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 555 gtgcatgaagatactgtcag 574
           ||||||||||||||||||||
Sbjct: 394 gtgcatgaagatactgtcag 413
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>emb|AL929443.4| Mouse DNA sequence from clone RP23-467A7 on chromosome 2, complete
             sequence
          Length = 189821

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   cttcaagaaccagcctctgc 148
             ||||||||||||||||||||
Sbjct: 63398 cttcaagaaccagcctctgc 63379


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,160,288
Number of Sequences: 3902068
Number of extensions: 6160288
Number of successful extensions: 115737
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115572
Number of HSP's gapped (non-prelim): 165
length of query: 605
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 582
effective length of database: 17,143,297,704
effective search space: 9977399263728
effective search space used: 9977399263728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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