ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd21m13 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK104816.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-H08, full insert sequence Length = 955 Score = 248 bits (125), Expect = 2e-62 Identities = 199/224 (88%) Strand = Plus / Minus Query: 336 ccttgggaacaggaacgcccttatcttgagcggctggagccggtccctgctggcggcgtc 395 |||||||||||||||||||| ||||||||||||||||| ||||||| |||||| ||||| Sbjct: 550 ccttgggaacaggaacgcccggatcttgagcggctggaggcggtcccggctggccgcgtc 491 Query: 396 gtactcctcgagcaggtggccgaggtcgtcgttggtcgtgacggagacgagcgcgtctag 455 ||||||||| ||||||| | |||||||||||| | ||||||||||||||||||| || Sbjct: 490 gtactcctccagcaggttggcgaggtcgtcgtcgccgttgacggagacgagcgcgtccag 431 Query: 456 gtcctccgtcggcagctggcaccgcaggctcatcgcctnccatccgcacatgtccgtcag 515 |||||||||||| |||||||||||||||| || ||||| ||| |||||||| ||| |||| Sbjct: 430 gtcctccgtcgggagctggcaccgcaggcacaccgcctcccacccgcacatctccctcag 371 Query: 516 cttccgttgcagctcgtgaaattggagggagcggtcgacggaga 559 ||||||||||| |||||| || ||||||||||||||||||||| Sbjct: 370 cttccgttgcaactcgtggaaagggagggagcggtcgacggaga 327
>dbj|AK066452.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013061N18, full insert sequence Length = 968 Score = 248 bits (125), Expect = 2e-62 Identities = 199/224 (88%) Strand = Plus / Minus Query: 336 ccttgggaacaggaacgcccttatcttgagcggctggagccggtccctgctggcggcgtc 395 |||||||||||||||||||| ||||||||||||||||| ||||||| |||||| ||||| Sbjct: 559 ccttgggaacaggaacgcccggatcttgagcggctggaggcggtcccggctggccgcgtc 500 Query: 396 gtactcctcgagcaggtggccgaggtcgtcgttggtcgtgacggagacgagcgcgtctag 455 ||||||||| ||||||| | |||||||||||| | ||||||||||||||||||| || Sbjct: 499 gtactcctccagcaggttggcgaggtcgtcgtcgccgttgacggagacgagcgcgtccag 440 Query: 456 gtcctccgtcggcagctggcaccgcaggctcatcgcctnccatccgcacatgtccgtcag 515 |||||||||||| |||||||||||||||| || ||||| ||| |||||||| ||| |||| Sbjct: 439 gtcctccgtcgggagctggcaccgcaggcacaccgcctcccacccgcacatctccctcag 380 Query: 516 cttccgttgcagctcgtgaaattggagggagcggtcgacggaga 559 ||||||||||| |||||| || ||||||||||||||||||||| Sbjct: 379 cttccgttgcaactcgtggaaagggagggagcggtcgacggaga 336
>gb|AC145808.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057F07 map near 50283S, complete sequence Length = 139827 Score = 222 bits (112), Expect = 1e-54 Identities = 171/191 (89%) Strand = Plus / Plus Query: 336 ccttgggaacaggaacgcccttatcttgagcggctggagccggtccctgctggcggcgtc 395 |||||||||||||||||||| ||||||||||||||||| ||||||| |||||| ||||| Sbjct: 110378 ccttgggaacaggaacgcccggatcttgagcggctggaggcggtcccggctggccgcgtc 110437 Query: 396 gtactcctcgagcaggtggccgaggtcgtcgttggtcgtgacggagacgagcgcgtctag 455 ||||||||| ||||||| | |||||||||||| | |||||||||||||||||||| || Sbjct: 110438 gtactcctccagcaggttggcgaggtcgtcgtcgccggtgacggagacgagcgcgtccag 110497 Query: 456 gtcctccgtcggcagctggcaccgcaggctcatcgcctnccatccgcacatgtccgtcag 515 |||||||||||| |||||||||||||||| || ||||| ||| |||||||| ||| |||| Sbjct: 110498 gtcctccgtcgggagctggcaccgcaggcacaccgcctcccacccgcacatctccctcag 110557 Query: 516 cttccgttgca 526 ||||||||||| Sbjct: 110558 cttccgttgca 110568 Score = 214 bits (108), Expect = 2e-52 Identities = 170/191 (89%) Strand = Plus / Plus Query: 336 ccttgggaacaggaacgcccttatcttgagcggctggagccggtccctgctggcggcgtc 395 |||||||||||||||||||| ||||||||||||||||| ||||||| |||||| ||||| Sbjct: 118396 ccttgggaacaggaacgcccggatcttgagcggctggaggcggtcccggctggccgcgtc 118455 Query: 396 gtactcctcgagcaggtggccgaggtcgtcgttggtcgtgacggagacgagcgcgtctag 455 ||||||||| ||||||| | |||||||||||| | ||||||||||||||||||| || Sbjct: 118456 gtactcctccagcaggttggcgaggtcgtcgtcgccgttgacggagacgagcgcgtccag 118515 Query: 456 gtcctccgtcggcagctggcaccgcaggctcatcgcctnccatccgcacatgtccgtcag 515 |||||||||||| |||||||||||||||| || ||||| ||| |||||||| ||| |||| Sbjct: 118516 gtcctccgtcgggagctggcaccgcaggcacaccgcctcccacccgcacatctccctcag 118575 Query: 516 cttccgttgca 526 ||||||||||| Sbjct: 118576 cttccgttgca 118586 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 539 ggagggagcggtcgacggaga 559 ||||||||||||||||||||| Sbjct: 118691 ggagggagcggtcgacggaga 118711 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 539 ggagggagcggtcgacggaga 559 ||||||||||||||||||||| Sbjct: 110673 ggagggagcggtcgacggaga 110693
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 222 bits (112), Expect = 1e-54 Identities = 171/191 (89%) Strand = Plus / Minus Query: 336 ccttgggaacaggaacgcccttatcttgagcggctggagccggtccctgctggcggcgtc 395 |||||||||||||||||||| ||||||||||||||||| ||||||| |||||| ||||| Sbjct: 14135916 ccttgggaacaggaacgcccggatcttgagcggctggaggcggtcccggctggccgcgtc 14135857 Query: 396 gtactcctcgagcaggtggccgaggtcgtcgttggtcgtgacggagacgagcgcgtctag 455 ||||||||| ||||||| | |||||||||||| | |||||||||||||||||||| || Sbjct: 14135856 gtactcctccagcaggttggcgaggtcgtcgtcgccggtgacggagacgagcgcgtccag 14135797 Query: 456 gtcctccgtcggcagctggcaccgcaggctcatcgcctnccatccgcacatgtccgtcag 515 |||||||||||| |||||||||||||||| || ||||| ||| |||||||| ||| |||| Sbjct: 14135796 gtcctccgtcgggagctggcaccgcaggcacaccgcctcccacccgcacatctccctcag 14135737 Query: 516 cttccgttgca 526 ||||||||||| Sbjct: 14135736 cttccgttgca 14135726 Score = 214 bits (108), Expect = 2e-52 Identities = 170/191 (89%) Strand = Plus / Minus Query: 336 ccttgggaacaggaacgcccttatcttgagcggctggagccggtccctgctggcggcgtc 395 |||||||||||||||||||| ||||||||||||||||| ||||||| |||||| ||||| Sbjct: 14127898 ccttgggaacaggaacgcccggatcttgagcggctggaggcggtcccggctggccgcgtc 14127839 Query: 396 gtactcctcgagcaggtggccgaggtcgtcgttggtcgtgacggagacgagcgcgtctag 455 ||||||||| ||||||| | |||||||||||| | ||||||||||||||||||| || Sbjct: 14127838 gtactcctccagcaggttggcgaggtcgtcgtcgccgttgacggagacgagcgcgtccag 14127779 Query: 456 gtcctccgtcggcagctggcaccgcaggctcatcgcctnccatccgcacatgtccgtcag 515 |||||||||||| |||||||||||||||| || ||||| ||| |||||||| ||| |||| Sbjct: 14127778 gtcctccgtcgggagctggcaccgcaggcacaccgcctcccacccgcacatctccctcag 14127719 Query: 516 cttccgttgca 526 ||||||||||| Sbjct: 14127718 cttccgttgca 14127708 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 539 ggagggagcggtcgacggaga 559 ||||||||||||||||||||| Sbjct: 14135621 ggagggagcggtcgacggaga 14135601 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 539 ggagggagcggtcgacggaga 559 ||||||||||||||||||||| Sbjct: 14127603 ggagggagcggtcgacggaga 14127583
>dbj|AK061328.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-A02, full insert sequence Length = 1075 Score = 222 bits (112), Expect = 1e-54 Identities = 171/191 (89%) Strand = Plus / Plus Query: 336 ccttgggaacaggaacgcccttatcttgagcggctggagccggtccctgctggcggcgtc 395 |||||||||||||||||||| ||||||||||||||||| ||||||| |||||| ||||| Sbjct: 307 ccttgggaacaggaacgcccggatcttgagcggctggaggcggtcccggctggccgcgtc 366 Query: 396 gtactcctcgagcaggtggccgaggtcgtcgttggtcgtgacggagacgagcgcgtctag 455 ||||||||| ||||||| | |||||||||||| | |||||||||||||||||||| || Sbjct: 367 gtactcctccagcaggttggcgaggtcgtcgtcgccggtgacggagacgagcgcgtccag 426 Query: 456 gtcctccgtcggcagctggcaccgcaggctcatcgcctnccatccgcacatgtccgtcag 515 |||||||||||| |||||||||||||||| || ||||| ||| |||||||| ||| |||| Sbjct: 427 gtcctccgtcgggagctggcaccgcaggcacaccgcctcccacccgcacatctccctcag 486 Query: 516 cttccgttgca 526 ||||||||||| Sbjct: 487 cttccgttgca 497 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 539 ggagggagcggtcgacggaga 559 ||||||||||||||||||||| Sbjct: 602 ggagggagcggtcgacggaga 622
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 222 bits (112), Expect = 1e-54 Identities = 171/191 (89%) Strand = Plus / Minus Query: 336 ccttgggaacaggaacgcccttatcttgagcggctggagccggtccctgctggcggcgtc 395 |||||||||||||||||||| ||||||||||||||||| ||||||| |||||| ||||| Sbjct: 14217918 ccttgggaacaggaacgcccggatcttgagcggctggaggcggtcccggctggccgcgtc 14217859 Query: 396 gtactcctcgagcaggtggccgaggtcgtcgttggtcgtgacggagacgagcgcgtctag 455 ||||||||| ||||||| | |||||||||||| | |||||||||||||||||||| || Sbjct: 14217858 gtactcctccagcaggttggcgaggtcgtcgtcgccggtgacggagacgagcgcgtccag 14217799 Query: 456 gtcctccgtcggcagctggcaccgcaggctcatcgcctnccatccgcacatgtccgtcag 515 |||||||||||| |||||||||||||||| || ||||| ||| |||||||| ||| |||| Sbjct: 14217798 gtcctccgtcgggagctggcaccgcaggcacaccgcctcccacccgcacatctccctcag 14217739 Query: 516 cttccgttgca 526 ||||||||||| Sbjct: 14217738 cttccgttgca 14217728 Score = 214 bits (108), Expect = 2e-52 Identities = 170/191 (89%) Strand = Plus / Minus Query: 336 ccttgggaacaggaacgcccttatcttgagcggctggagccggtccctgctggcggcgtc 395 |||||||||||||||||||| ||||||||||||||||| ||||||| |||||| ||||| Sbjct: 14209900 ccttgggaacaggaacgcccggatcttgagcggctggaggcggtcccggctggccgcgtc 14209841 Query: 396 gtactcctcgagcaggtggccgaggtcgtcgttggtcgtgacggagacgagcgcgtctag 455 ||||||||| ||||||| | |||||||||||| | ||||||||||||||||||| || Sbjct: 14209840 gtactcctccagcaggttggcgaggtcgtcgtcgccgttgacggagacgagcgcgtccag 14209781 Query: 456 gtcctccgtcggcagctggcaccgcaggctcatcgcctnccatccgcacatgtccgtcag 515 |||||||||||| |||||||||||||||| || ||||| ||| |||||||| ||| |||| Sbjct: 14209780 gtcctccgtcgggagctggcaccgcaggcacaccgcctcccacccgcacatctccctcag 14209721 Query: 516 cttccgttgca 526 ||||||||||| Sbjct: 14209720 cttccgttgca 14209710 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 539 ggagggagcggtcgacggaga 559 ||||||||||||||||||||| Sbjct: 14217623 ggagggagcggtcgacggaga 14217603 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 539 ggagggagcggtcgacggaga 559 ||||||||||||||||||||| Sbjct: 14209605 ggagggagcggtcgacggaga 14209585
>gb|AF493074.1| Oryza sativa susceptibility antioxidant protein (RREO) mRNA, partial cds Length = 326 Score = 188 bits (95), Expect = 1e-44 Identities = 154/174 (88%) Strand = Plus / Minus Query: 386 tggcggcgtcgtactcctcgagcaggtggccgaggtcgtcgttggtcgtgacggagacga 445 |||| |||||||||||||| ||||||| | |||||||||||| | ||||||||||||| Sbjct: 326 tggccgcgtcgtactcctccagcaggttggcgaggtcgtcgtcgccggtgacggagacga 267 Query: 446 gcgcgtctaggtcctccgtcggcagctggcaccgcaggctcatcgcctnccatccgcaca 505 ||||||| |||||||||||||| |||||||||||||||| || ||||| ||| ||||||| Sbjct: 266 gcgcgtccaggtcctccgtcgggagctggcaccgcaggcacaccgcctcccacccgcaca 207 Query: 506 tgtccgtcagcttccgttgcagctcgtgaaattggagggagcggtcgacggaga 559 | ||| ||||||||||||||| |||||| || ||||||||||||||||||||| Sbjct: 206 tctccctcagcttccgttgcaactcgtggaaagggagggagcggtcgacggaga 153
>ref|XM_468319.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1524 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 433 gtgacggagacgagcgcgtctaggtcctc 461 |||||||||||||||||||| |||||||| Sbjct: 338 gtgacggagacgagcgcgtcgaggtcctc 310
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 433 gtgacggagacgagcgcgtctaggtcctc 461 |||||||||||||||||||| |||||||| Sbjct: 34594287 gtgacggagacgagcgcgtcgaggtcctc 34594315 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 433 gtgacggagacgagcgcgtctaggtcctc 461 ||||||||||||||| |||| |||||||| Sbjct: 32301516 gtgacggagacgagcacgtcgaggtcctc 32301488 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 ccatgggcgatctcatctcac 123 ||||||||||||||||||||| Sbjct: 1116814 ccatgggcgatctcatctcac 1116794
>dbj|AP004064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1520_C09 Length = 145553 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 433 gtgacggagacgagcgcgtctaggtcctc 461 |||||||||||||||||||| |||||||| Sbjct: 105227 gtgacggagacgagcgcgtcgaggtcctc 105255
>dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_G06 Length = 122580 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 433 gtgacggagacgagcgcgtctaggtcctc 461 |||||||||||||||||||| |||||||| Sbjct: 60902 gtgacggagacgagcgcgtcgaggtcctc 60930
>dbj|AK063947.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-E12, full insert sequence Length = 1601 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 433 gtgacggagacgagcgcgtctaggtcctc 461 |||||||||||||||||||| |||||||| Sbjct: 869 gtgacggagacgagcgcgtcgaggtcctc 841
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 309 gggcggcgagatcggcggcgtt 330 |||||||||||||||||||||| Sbjct: 4460742 gggcggcgagatcggcggcgtt 4460763
>gb|AY040246.2| Triticum aestivum Na+/H+ antiporter (NHX2) mRNA, complete cds Length = 2422 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 399 ctcctcgagcaggtggccgagg 420 |||||||||||||||||||||| Sbjct: 141 ctcctcgagcaggtggccgagg 120
>ref|NM_185269.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 441 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 536 attggagggagcggtcgacgg 556 ||||||||||||||||||||| Sbjct: 181 attggagggagcggtcgacgg 161
>ref|XM_475252.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1101 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 433 gtgacggagacgagcgcgtctaggtcctc 461 ||||||||||||||| |||| |||||||| Sbjct: 341 gtgacggagacgagcacgtcgaggtcctc 313
>ref|XM_467963.1| Oryza sativa (japonica cultivar-group), mRNA Length = 852 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 433 gtgacggagacgagcgcgtctaggtcctc 461 ||||||||||||||| |||| |||||||| Sbjct: 599 gtgacggagacgagcacgtcgaggtcctc 571
>ref|XM_463914.1| Oryza sativa (japonica cultivar-group), mRNA Length = 885 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 ccatgggcgatctcatctcac 123 ||||||||||||||||||||| Sbjct: 748 ccatgggcgatctcatctcac 728
>ref|XM_506694.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0088N06.23 mRNA Length = 887 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 ccatgggcgatctcatctcac 123 ||||||||||||||||||||| Sbjct: 749 ccatgggcgatctcatctcac 729
>gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0431G05, complete sequence Length = 145044 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 536 attggagggagcggtcgacgg 556 ||||||||||||||||||||| Sbjct: 33413 attggagggagcggtcgacgg 33433
>gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0044P19, complete sequence Length = 176917 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 433 gtgacggagacgagcgcgtctaggtcctc 461 ||||||||||||||| |||| |||||||| Sbjct: 110214 gtgacggagacgagcacgtcgaggtcctc 110186
>gb|AF263543.1| Oryza sativa clone 15CAC microsatellite sequence Length = 435 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 ccatgggcgatctcatctcac 123 ||||||||||||||||||||| Sbjct: 261 ccatgggcgatctcatctcac 241
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 303 cggggtgggcggcgagatcggcggc 327 |||||||||||||| |||||||||| Sbjct: 2934740 cggggtgggcggcgggatcggcggc 2934716
>gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636F09, complete sequence Length = 177374 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 433 gtgacggagacgagcgcgtctaggtcctc 461 ||||||||||||||| |||| |||||||| Sbjct: 52795 gtgacggagacgagcacgtcgaggtcctc 52767
>dbj|AK061894.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-G07, full insert sequence Length = 887 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 ccatgggcgatctcatctcac 123 ||||||||||||||||||||| Sbjct: 749 ccatgggcgatctcatctcac 729
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 433 gtgacggagacgagcgcgtctaggtcctc 461 ||||||||||||||| |||| |||||||| Sbjct: 20796990 gtgacggagacgagcacgtcgaggtcctc 20796962 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 536 attggagggagcggtcgacgg 556 ||||||||||||||||||||| Sbjct: 3155696 attggagggagcggtcgacgg 3155716
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 401 cctcgagcaggtggccgaggt 421 ||||||||||||||||||||| Sbjct: 1563303 cctcgagcaggtggccgaggt 1563323 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 ggacgacggggtgggcggcg 316 |||||||||||||||||||| Sbjct: 2227613 ggacgacggggtgggcggcg 2227632
>dbj|AP004817.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0539D10 Length = 158691 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 433 gtgacggagacgagcgcgtctaggtcctc 461 ||||||||||||||| |||| |||||||| Sbjct: 145529 gtgacggagacgagcacgtcgaggtcctc 145501
>dbj|AP004078.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1020_C02 Length = 124578 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 ccatgggcgatctcatctcac 123 ||||||||||||||||||||| Sbjct: 69338 ccatgggcgatctcatctcac 69318
>dbj|AP005851.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0088N06 Length = 123454 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 ccatgggcgatctcatctcac 123 ||||||||||||||||||||| Sbjct: 105522 ccatgggcgatctcatctcac 105502
>dbj|AP005287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A11 Length = 132352 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 433 gtgacggagacgagcgcgtctaggtcctc 461 ||||||||||||||| |||| |||||||| Sbjct: 77348 gtgacggagacgagcacgtcgaggtcctc 77320
>dbj|AK120642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154O20, full insert sequence Length = 1856 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 433 gtgacggagacgagcgcgtctaggtcctc 461 ||||||||||||||| |||| |||||||| Sbjct: 902 gtgacggagacgagcacgtcgaggtcctc 874
>dbj|AK105306.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-A12, full insert sequence Length = 1722 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 433 gtgacggagacgagcgcgtctaggtcctc 461 ||||||||||||||| |||| |||||||| Sbjct: 768 gtgacggagacgagcacgtcgaggtcctc 740
>dbj|AK098919.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N03, full insert sequence Length = 885 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 ccatgggcgatctcatctcac 123 ||||||||||||||||||||| Sbjct: 748 ccatgggcgatctcatctcac 728
>dbj|AK070869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023070E07, full insert sequence Length = 876 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 536 attggagggagcggtcgacgg 556 ||||||||||||||||||||| Sbjct: 254 attggagggagcggtcgacgg 234
>gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, complete cds; chivosazol biosynthetic gene cluster, complete sequence; and hypothetical protein gene, complete cds Length = 96547 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 235 cgagccggagggggacgagcc 255 ||||||||||||||||||||| Sbjct: 22504 cgagccggagggggacgagcc 22524
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 201 gagctggtgcgggcgccggtg 221 ||||||||||||||||||||| Sbjct: 76067 gagctggtgcgggcgccggtg 76087
>gb|L29470.1|RICCYP2R Oryza sativa cyclophilin 2 (Cyp2) mRNA, complete cds Length = 824 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 ccatgggcgatctcatctcac 123 ||||||||||||||||||||| Sbjct: 693 ccatgggcgatctcatctcac 673
>gb|L29469.1|RICCYP2G Oryza sativa cyclophilin 2 (Cyp2) gene, complete cds Length = 2323 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 ccatgggcgatctcatctcac 123 ||||||||||||||||||||| Sbjct: 1804 ccatgggcgatctcatctcac 1784
>ref|NM_105139.3| Arabidopsis thaliana copper ion binding / electron transporter AT1G64640 mRNA, complete cds Length = 1340 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 521 gttgcagctcgtgaaattggaggg 544 |||||||||| ||||||||||||| Sbjct: 270 gttgcagctcttgaaattggaggg 247
>ref|NM_105138.3| Arabidopsis thaliana kinase/ transcription factor AT1G64630 mRNA, complete cds Length = 2718 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 521 gttgcagctcgtgaaattggaggg 544 |||||||||| ||||||||||||| Sbjct: 2685 gttgcagctcttgaaattggaggg 2708
>ref|XM_469073.1| Oryza sativa (japonica cultivar-group), mRNA Length = 924 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 ggcggcgtcgtactcctcga 406 |||||||||||||||||||| Sbjct: 48 ggcggcgtcgtactcctcga 29
>gb|AE009059.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 85 of 256 of the complete sequence Length = 11712 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 gggcggcgagatcggcggcg 328 |||||||||||||||||||| Sbjct: 7151 gggcggcgagatcggcggcg 7170
>ref|XM_657525.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5013.2), mRNA Length = 1860 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 atcttgagcggctggagccg 377 |||||||||||||||||||| Sbjct: 117 atcttgagcggctggagccg 98
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 gggcggcgagatcggcggcg 328 |||||||||||||||||||| Sbjct: 3106728 gggcggcgagatcggcggcg 3106709
>gb|BT012397.1| Arabidopsis thaliana At1g64640 mRNA, complete cds Length = 576 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 521 gttgcagctcgtgaaattggaggg 544 |||||||||| ||||||||||||| Sbjct: 264 gttgcagctcttgaaattggaggg 241
>gb|BT012210.1| Arabidopsis thaliana At1g64640 gene, complete cds Length = 803 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 521 gttgcagctcgtgaaattggaggg 544 |||||||||| ||||||||||||| Sbjct: 309 gttgcagctcttgaaattggaggg 286
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 ggcggcgtcgtactcctcga 406 |||||||||||||||||||| Sbjct: 25314249 ggcggcgtcgtactcctcga 25314268
>gb|AY077731.2| Podospora anserina thioredoxin II (trx2) gene, complete cds Length = 1369 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 gacgacggggtgggcggcga 317 |||||||||||||||||||| Sbjct: 351 gacgacggggtgggcggcga 332
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 ggcggcgagatcggcggcgt 329 |||||||||||||||||||| Sbjct: 696686 ggcggcgagatcggcggcgt 696667
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 gggcggcgagatcggcggcg 328 |||||||||||||||||||| Sbjct: 4685390 gggcggcgagatcggcggcg 4685409
>gb|AC133859.4| Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete sequence Length = 152828 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 ggcggcgtcgtactcctcga 406 |||||||||||||||||||| Sbjct: 129111 ggcggcgtcgtactcctcga 129092
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 289 ggcctggaggacgacggggtgggc 312 |||| ||||||||||||||||||| Sbjct: 3133102 ggccgggaggacgacggggtgggc 3133125
>emb|BX572608.1| Rhodopseudomonas palustris CGA009 complete genome; segment 16/16 Length = 227214 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 ggcggcgagatcggcggcgt 329 |||||||||||||||||||| Sbjct: 107835 ggcggcgagatcggcggcgt 107816
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 gggcggcgagatcggcggcg 328 |||||||||||||||||||| Sbjct: 935723 gggcggcgagatcggcggcg 935742
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 gacgacggggtgggcggcga 317 |||||||||||||||||||| Sbjct: 3613849 gacgacggggtgggcggcga 3613830
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 ggcggcgagatcggcggcgt 329 |||||||||||||||||||| Sbjct: 345426 ggcggcgagatcggcggcgt 345407
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 387 ggcggcgtcgtactcctcga 406 |||||||||||||||||||| Sbjct: 25405558 ggcggcgtcgtactcctcga 25405577
>emb|BX817979.1|CNS0ACGE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL54ZH07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 706 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 521 gttgcagctcgtgaaattggaggg 544 |||||||||| ||||||||||||| Sbjct: 256 gttgcagctcttgaaattggaggg 233
>emb|BX817707.1|CNS0ACG9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL38ZD05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 674 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 521 gttgcagctcgtgaaattggaggg 544 |||||||||| ||||||||||||| Sbjct: 256 gttgcagctcttgaaattggaggg 233
>gb|AC009519.4|AC009519 Genomic sequence for Arabidopsis thaliana BAC F1N19 from chromosome I, complete sequence Length = 113172 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 521 gttgcagctcgtgaaattggaggg 544 |||||||||| ||||||||||||| Sbjct: 91082 gttgcagctcttgaaattggaggg 91105
>gb|AE001439.1| Helicobacter pylori J99, complete genome Length = 1643831 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 ggcgagatcggcggcgtttt 332 |||||||||||||||||||| Sbjct: 865996 ggcgagatcggcggcgtttt 866015 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,326,313 Number of Sequences: 3902068 Number of extensions: 3326313 Number of successful extensions: 64141 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62751 Number of HSP's gapped (non-prelim): 1385 length of query: 560 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 537 effective length of database: 17,143,297,704 effective search space: 9205950867048 effective search space used: 9205950867048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
