ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd21m12 |
|---|---|
| Clone Library Name | barley_pub |
>ALA2_PANMI (P34106) Alanine aminotransferase 2 (EC 2.6.1.2) (GPT)| (Glutamic--pyruvic transaminase 2) (Glutamic--alanine transaminase 2) (ALAAT-2) Length = 482 Score = 130 bits (326), Expect = 3e-30 Identities = 57/108 (52%), Positives = 81/108 (75%) Frame = -2 Query: 567 AQIMTDGFNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGI 388 A+ + D FN+ + CN EGAMY FPQI LP++A++ AK+A K PD +Y L+LLE+TGI Sbjct: 375 AKALEDAFNNLEGISCNKAEGAMYLFPQIHLPKKAIEAAKAANKAPDAFYALRLLESTGI 434 Query: 387 STVPGSGFGQKEGVFHLRTTILPAEEDMPAIMSSFKKFNDSFMDQYQD 244 VPGSGFGQ G +H+R TILP E+ +PA+++ FK F+++FM +Y+D Sbjct: 435 VVVPGSGFGQVPGTWHIRCTILPQEDKIPAVITRFKAFHEAFMAEYRD 482
>ALA2_HORVU (P52894) Alanine aminotransferase 2 (EC 2.6.1.2) (GPT)| (Glutamic--pyruvic transaminase 2) (Glutamic--alanine transaminase 2) (ALAAT-2) Length = 482 Score = 126 bits (317), Expect = 4e-29 Identities = 57/108 (52%), Positives = 77/108 (71%) Frame = -2 Query: 567 AQIMTDGFNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGI 388 A+ + FN + CN EGAMY FPQI LPQ+A++ AK+A K PD +Y L+LLE+TGI Sbjct: 375 AKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGI 434 Query: 387 STVPGSGFGQKEGVFHLRTTILPAEEDMPAIMSSFKKFNDSFMDQYQD 244 VPGSGFGQ G +H R TILP E+ +PA++S F F+++FM +Y+D Sbjct: 435 VVVPGSGFGQVPGTWHFRCTILPQEDKIPAVISRFTVFHEAFMSEYRD 482
>ALAT_HUMAN (P24298) Alanine aminotransferase (EC 2.6.1.2) (Glutamic--pyruvic| transaminase) (GPT) (Glutamic--alanine transaminase) Length = 495 Score = 108 bits (269), Expect = 1e-23 Identities = 48/106 (45%), Positives = 70/106 (66%) Frame = -2 Query: 567 AQIMTDGFNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGI 388 A++ FN + CN +GAMYSFP+++LP RA++ A+ G PD+++CL+LLE TGI Sbjct: 389 AKLTEQVFNEAPGISCNPVQGAMYSFPRVQLPPRAVERAQELGLAPDMFFCLRLLEETGI 448 Query: 387 STVPGSGFGQKEGVFHLRTTILPAEEDMPAIMSSFKKFNDSFMDQY 250 VPGSGFGQ+EG +H R TILP E + ++ +F+ F +Y Sbjct: 449 CVVPGSGFGQREGTYHFRMTILPPLEKLRLLLEKLSRFHAKFTLEY 494
>ALAT_MOUSE (Q8QZR5) Alanine aminotransferase (EC 2.6.1.2) (Glutamic--pyruvic| transaminase) (GPT) (Glutamic--alanine transaminase) Length = 495 Score = 106 bits (265), Expect = 4e-23 Identities = 49/106 (46%), Positives = 68/106 (64%) Frame = -2 Query: 567 AQIMTDGFNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGI 388 A++ FN + CN +GAMYSFPQI+LP +A+ A+ G PD+++CL LLE TGI Sbjct: 389 AKLTEQVFNEAPGIRCNPVQGAMYSFPQIQLPLKAVQRAQDLGLAPDMFFCLCLLEETGI 448 Query: 387 STVPGSGFGQKEGVFHLRTTILPAEEDMPAIMSSFKKFNDSFMDQY 250 VPGSGFGQ+EG +H R TILP E + ++ + F+ F +Y Sbjct: 449 CVVPGSGFGQQEGTYHFRMTILPPMEKLRVLLEKLRHFHAKFTHEY 494
>ALAT_RAT (P25409) Alanine aminotransferase (EC 2.6.1.2) (Glutamic--pyruvic| transaminase) (GPT) (Glutamic--alanine transaminase) Length = 495 Score = 105 bits (261), Expect = 1e-22 Identities = 48/106 (45%), Positives = 67/106 (63%) Frame = -2 Query: 567 AQIMTDGFNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGI 388 A++ FN + CN +GAMYSFPQ++LP +A+ A+ G PD+++CL LLE TGI Sbjct: 389 AKLTEQVFNEAPGIRCNPVQGAMYSFPQVQLPLKAVQRAQELGLAPDMFFCLCLLEETGI 448 Query: 387 STVPGSGFGQKEGVFHLRTTILPAEEDMPAIMSSFKKFNDSFMDQY 250 VPGSGFGQ+EG +H R TILP E + ++ F+ F +Y Sbjct: 449 CVVPGSGFGQQEGTYHFRMTILPPMEKLRLLLEKLSHFHAKFTHEY 494
>ALAM_YEAST (P52893) Putative alanine aminotransferase, mitochondrial precursor| (EC 2.6.1.2) (Glutamic--pyruvic transaminase) (GPT) (Glutamic--alanine transaminase) Length = 592 Score = 98.6 bits (244), Expect = 1e-20 Identities = 49/108 (45%), Positives = 67/108 (62%) Frame = -2 Query: 567 AQIMTDGFNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGI 388 A + + FNS + C +GAMY FP+I LP +A+ A+ PD +YC KLLE+TGI Sbjct: 488 AMTLYETFNSLEGIECQKPQGAMYLFPKIDLPFKAVQEARHLELTPDEFYCKKLLESTGI 547 Query: 387 STVPGSGFGQKEGVFHLRTTILPAEEDMPAIMSSFKKFNDSFMDQYQD 244 TVPGSGFGQ+ G +HLRTT L + + ++ F+ F DQY+D Sbjct: 548 CTVPGSGFGQEPGTYHLRTTFLAPGLEW---IKKWESFHKEFFDQYRD 592
>ALAT_YEAST (P52892) Putative alanine aminotransferase (EC 2.6.1.2)| (Glutamic--pyruvic transaminase) (GPT) (Glutamic--alanine transaminase) Length = 507 Score = 92.8 bits (229), Expect = 6e-19 Identities = 43/108 (39%), Positives = 67/108 (62%) Frame = -2 Query: 567 AQIMTDGFNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGI 388 A ++ + F + C +GAMY FP++ LP++A+ ++ G EPD +YC LLE+TGI Sbjct: 403 ANLLYETFKELEGIECQKPQGAMYLFPRLVLPKKALCESERLGIEPDEFYCTSLLESTGI 462 Query: 387 STVPGSGFGQKEGVFHLRTTILPAEEDMPAIMSSFKKFNDSFMDQYQD 244 TVPGSGFGQ+ G +H+RTT L + +K+F+ F +Y++ Sbjct: 463 CTVPGSGFGQRPGTYHVRTTFLAPGTKW---IQDWKEFHQDFFSKYRN 507
>ALAT_SCHPO (Q10334) Putative alanine aminotransferase (EC 2.6.1.2)| (Glutamic--pyruvic transaminase) (GPT) (Glutamic--alanine transaminase) Length = 505 Score = 76.3 bits (186), Expect = 6e-14 Identities = 38/102 (37%), Positives = 58/102 (56%) Frame = -2 Query: 552 DGFNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPG 373 +G + V C GAMY P + LP++ + AK+ +PD +Y ++LL+ +GI VPG Sbjct: 407 EGTKRMKRVSCLEPHGAMYLHPSVSLPEKLITTAKAQKIQPDEFYAIELLKRSGICVVPG 466 Query: 372 SGFGQKEGVFHLRTTILPAEEDMPAIMSSFKKFNDSFMDQYQ 247 SGFGQ EG +H+R T L + + F K ++ MD Y+ Sbjct: 467 SGFGQPEGDYHIRITFLAKGTE---YIERFVKAHNEIMDLYE 505
>AAT_SULTO (Q972A2) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (AspAT) Length = 399 Score = 39.3 bits (90), Expect = 0.008 Identities = 27/101 (26%), Positives = 47/101 (46%) Frame = -2 Query: 561 IMTDGFNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGIST 382 IM + + + + ++GA Y FP I ++ K A + LKL+E G++T Sbjct: 304 IMYEELKKIKGIQVHKSQGAFYMFPFIG------EILKKANLSVKDF-SLKLIEEKGVTT 356 Query: 381 VPGSGFGQKEGVFHLRTTILPAEEDMPAIMSSFKKFNDSFM 259 +PG F + G +R + E+D+ + K+F D M Sbjct: 357 IPGEVFPLEVGKDFVRLSFAVKEDDIREGIKRMKEFIDMLM 397
>AATB2_RHIME (Q06191) Aspartate aminotransferase B (EC 2.6.1.1) (Transaminase A)| (AspAT) Length = 410 Score = 38.9 bits (89), Expect = 0.010 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Frame = -2 Query: 561 IMTDGFNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGK--EPDVYYCLKLLEATGI 388 ++ +G N+ + C EGA Y+F R + +GK E D +C LLE + + Sbjct: 314 LVVNGLNAIEGLDCRVPEGAFYTFSGCAGVARRVT---PSGKRIESDTDFCAYLLEDSHV 370 Query: 387 STVPGSGFG 361 + VPGS FG Sbjct: 371 AVVPGSAFG 379
>AAT1_BACSU (P53001) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (ASPAT) Length = 393 Score = 37.4 bits (85), Expect = 0.030 Identities = 23/59 (38%), Positives = 29/59 (49%) Frame = -2 Query: 522 CNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSGFGQKEGV 346 C EGA Y FP A + A+S G + + LLE ++ VPGSGFG E V Sbjct: 315 CVKPEGAFYLFPN------AKEAAQSCGFKDVDEFVKALLEEEKVAIVPGSGFGSPENV 367
>AAT_RHILP (O86459) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (ASPAT) Length = 400 Score = 36.2 bits (82), Expect = 0.066 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Frame = -2 Query: 543 NSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGK--EPDVYYCLKLLEATGISTVPGS 370 N + +VC EGA Y +P + + +GK E D + +LLE+ G++ V GS Sbjct: 310 NQAKGIVCPVPEGAFYVYPSCK---GLIGKTAPSGKVIETDEDFVSELLESEGVAVVHGS 366 Query: 369 GFG 361 FG Sbjct: 367 AFG 369
>AATB1_RHIME (P58350) Aspartate aminotransferase B (EC 2.6.1.1) (Transaminase A)| (AspAT) Length = 410 Score = 35.8 bits (81), Expect = 0.087 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Frame = -2 Query: 561 IMTDGFNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGK--EPDVYYCLKLLEATGI 388 ++ +G N+ + C EGA Y+F + +GK + D +C LLE + Sbjct: 314 LVVNGLNAIDGLDCRVPEGAFYTFSGCA---GVLGKVTPSGKRIKTDTDFCAYLLEDAHV 370 Query: 387 STVPGSGFG 361 + VPGS FG Sbjct: 371 AVVPGSAFG 379
>AAT_BACST (Q59228) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (ASPAT) Length = 393 Score = 35.0 bits (79), Expect = 0.15 Identities = 25/71 (35%), Positives = 31/71 (43%) Frame = -2 Query: 522 CNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSGFGQKEGVF 343 C +GA Y FP R + A AG + LLE ++ VPGSGFG + V Sbjct: 315 CVKPQGAFYLFPNAR------EAAAMAGCRTVDEFVAALLEEAKVALVPGSGFGAPDNVR 368 Query: 342 HLRTTILPAEE 310 T L A E Sbjct: 369 LSYATSLDALE 379
>AAT_STRVG (Q60013) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (ASPAT) Length = 397 Score = 33.9 bits (76), Expect = 0.33 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 2/98 (2%) Frame = -2 Query: 564 QIMTDGFNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEP--DVYYCLKLLEATG 391 Q M N V C EGA Y++P + + + + GK P V +L+ Sbjct: 300 QTMVKMLNEIDGVFCPTPEGAFYAYPSV----KELLGKEIRGKRPQSSVELAALILDEVE 355 Query: 390 ISTVPGSGFGQKEGVFHLRTTILPAEEDMPAIMSSFKK 277 ++ VPG FG +LR + +ED+ +S +K Sbjct: 356 VAVVPGEAFGTPG---YLRLSYALGDEDLVEGVSRIQK 390
>AAT_SYNY3 (Q55128) Aspartate aminotransferase (EC 2.6.1.1) (Transaminase A)| (ASPAT) Length = 389 Score = 33.1 bits (74), Expect = 0.56 Identities = 19/73 (26%), Positives = 36/73 (49%) Frame = -2 Query: 564 QIMTDGFNSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGIS 385 Q++ +G N + C +GA Y F +D+AK+ + + +LLE+ ++ Sbjct: 302 QVIVEGINQIAGLSCPNPKGAFYVF---------VDIAKTGLNSLE--FSARLLESHQVA 350 Query: 384 TVPGSGFGQKEGV 346 +PG+ FG + V Sbjct: 351 VIPGAAFGADDCV 363
>AATA_RHIME (Q02635) Aspartate aminotransferase A (EC 2.6.1.1) (Transaminase A)| (AspAT) Length = 400 Score = 32.7 bits (73), Expect = 0.73 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%) Frame = -2 Query: 543 NSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSA--GK--EPDVYYCLKLLEATGISTVP 376 N + + C EGA Y +P A + K+A GK E D + +LLE G++ V Sbjct: 310 NQAKGISCPTPEGAFYVYPSC-----AGLIGKTAPSGKVIETDEDFVSELLETEGVAVVH 364 Query: 375 GSGFG 361 GS FG Sbjct: 365 GSAFG 369
>AAT_MYCTU (P63498) Probable aspartate aminotransferase (EC 2.6.1.1)| (Transaminase A) (ASPAT) Length = 429 Score = 31.6 bits (70), Expect = 1.6 Identities = 28/94 (29%), Positives = 37/94 (39%) Frame = -2 Query: 543 NSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSGF 364 N V C GA+Y+FP RL D+ + D L LL + I G+GF Sbjct: 343 NEIPGVSCVKPAGALYAFP--RLDPEVYDI------DDDEQLVLDLLLSEKILVTQGTGF 394 Query: 363 GQKEGVFHLRTTILPAEEDMPAIMSSFKKFNDSF 262 HLR LP D+ A + F S+ Sbjct: 395 NW-PAPDHLRLVTLPWSRDLAAAIERLGNFLVSY 427
>AAT_MYCBO (P63499) Probable aspartate aminotransferase (EC 2.6.1.1)| (Transaminase A) (ASPAT) Length = 429 Score = 31.6 bits (70), Expect = 1.6 Identities = 28/94 (29%), Positives = 37/94 (39%) Frame = -2 Query: 543 NSCRNVVCNFTEGAMYSFPQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSGF 364 N V C GA+Y+FP RL D+ + D L LL + I G+GF Sbjct: 343 NEIPGVSCVKPAGALYAFP--RLDPEVYDI------DDDEQLVLDLLLSEKILVTQGTGF 394 Query: 363 GQKEGVFHLRTTILPAEEDMPAIMSSFKKFNDSF 262 HLR LP D+ A + F S+ Sbjct: 395 NW-PAPDHLRLVTLPWSRDLAAAIERLGNFLVSY 427
>SNPC4_HUMAN (Q5SXM2) snRNA-activating protein complex subunit 4 (SNAPc subunit| 4) (snRNA-activating protein complex 190 kDa subunit) (SNAPc 190 kDa subunit) (Proximal sequence element-binding transcription factor alpha subunit) (PSE-binding factor alpha Length = 1469 Score = 31.6 bits (70), Expect = 1.6 Identities = 18/35 (51%), Positives = 21/35 (60%) Frame = -1 Query: 424 LLLPQASGSHWNIHCSRLRFWSERRGVPSEDNDPA 320 +L P +SGSH I S L SE +PSED DPA Sbjct: 20 ILDPGSSGSHVEISESSLESDSEADSLPSEDLDPA 54
>YARA_PROST (P46117) Putative HTH-type transcriptional regulator in aarA| 3'region Length = 282 Score = 30.8 bits (68), Expect = 2.8 Identities = 17/41 (41%), Positives = 22/41 (53%) Frame = -2 Query: 441 GKEPDVYYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILP 319 G PD+ + LKL G ST+ + FGQ E V L +LP Sbjct: 190 GNTPDINHMLKLANKKGCSTIVLTRFGQDEAV-RLADLVLP 229
>THIC_RHILO (Q98AZ3) Thiamine biosynthesis protein thiC| Length = 619 Score = 30.4 bits (67), Expect = 3.6 Identities = 20/64 (31%), Positives = 32/64 (50%) Frame = -2 Query: 489 PQIRLPQRAMDVAKSAGKEPDVYYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILPAEE 310 PQIR+P R + V +AG+ P + Y + +G T P ++G+ LR + A Sbjct: 35 PQIRVPMREISVHPTAGEPPVIVY-----DPSGPYTDPTVETSIEKGLARLRHEWITARG 89 Query: 309 DMPA 298 D+ A Sbjct: 90 DVEA 93
>HAGA1_PORGI (P59915) Hemagglutinin A precursor| Length = 2164 Score = 30.0 bits (66), Expect = 4.8 Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%) Frame = +2 Query: 260 MNESLNFLKLDMIAGMSSSA-GRIVVLRWNTPSF*PKPEPGTVDI 391 +N +++ ++ + + ++ SA G+ V L+W+ P+ P P PGT + Sbjct: 1369 VNVTVDPVQFNPVQNLTGSAVGQKVTLKWDAPNGTPNPNPGTTTL 1413 Score = 30.0 bits (66), Expect = 4.8 Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%) Frame = +2 Query: 260 MNESLNFLKLDMIAGMSSSA-GRIVVLRWNTPSF*PKPEPGTVDI 391 +N +++ ++ + + ++ SA G+ V L+W+ P+ P P PGT + Sbjct: 917 VNVTVDPVQFNPVQNLTGSAVGQKVTLKWDAPNGTPNPNPGTTTL 961 Score = 29.6 bits (65), Expect = 6.2 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +2 Query: 311 SSAGRIVVLRWNTPSF*PKPEPGTVDI 391 S+ G+ V L+W+ P+ P P PGT + Sbjct: 483 SAVGQKVTLKWDAPNGTPNPNPGTTTL 509
>NUOL_CAMJE (Q9PMA7) NADH-quinone oxidoreductase chain L (EC 1.6.99.5) (NADH| dehydrogenase I, chain L) (NDH-1, chain L) Length = 596 Score = 29.6 bits (65), Expect = 6.2 Identities = 12/39 (30%), Positives = 22/39 (56%) Frame = +3 Query: 87 ISPLYISSIATSFLHHSYSSQLINQLQLLVEKSSIILIC 203 +SPL + +I F HS+ L +L + ++ I++IC Sbjct: 446 MSPLMVLAIIAGFFEHSFFEYLSTKLVFIDAQNQIVMIC 484
>HAGA2_PORGI (Q51845) Hemagglutinin A precursor| Length = 2628 Score = 29.6 bits (65), Expect = 6.2 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +2 Query: 311 SSAGRIVVLRWNTPSF*PKPEPGTVDI 391 S+ G+ V L+W+ P+ P P PGT + Sbjct: 483 SAVGQKVTLKWDAPNGTPNPNPGTTTL 509 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,912,870 Number of Sequences: 219361 Number of extensions: 1689025 Number of successful extensions: 4636 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4483 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4631 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
