ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd21m11 |
|---|---|
| Clone Library Name | barley_pub |
>ANC1_CAEEL (Q9N4M4) Nuclear anchorage protein 1 (Anchorage 1 protein) (Nesprin| homolog) Length = 8545 Score = 32.0 bits (71), Expect = 0.37 Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 6/100 (6%) Frame = -3 Query: 374 YQDLVKLENKATSFVDDPKLPCEEALKRMYSLLEKVEQSVYALLRTRDMTTARYKEYG-- 201 Y L KLEN + ++ P+LP +A +R K+++ Y L R RD+ + + G Sbjct: 8213 YDYLEKLENNVSDVLNRPRLPVSQAQQR----FNKLKEQSYLLDRIRDL-KIDFDDLGEA 8267 Query: 200 -IPVDWLSDSGKVGKIKLASVQLARKY---MERVTSELDA 93 +P+ D + + + S++ R+Y M+++ +E+ A Sbjct: 8268 LLPLTVAEDELRFMHVHVESIE--RQYEDTMDKLNAEITA 8305
>GRI22_VITVI (Q9M4H4) Ripening-related protein grip22 precursor| Length = 220 Score = 29.6 bits (65), Expect = 1.9 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = -3 Query: 188 WLSDSGKVGKIKLASVQLARKYMERVTSELDALQGTDKE 72 W + + GK+ + Q R + +V E D++ G DKE Sbjct: 144 WYNGGSRCGKMIRITAQNGRSVLAKVVDECDSMHGCDKE 182
>TCF20_MOUSE (Q9EPQ8) Transcription factor 20 (Stromelysin 1 PDGF-responsive| element-binding protein) (SPRE-binding protein) (Nuclear factor SPBP) Length = 1983 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%) Frame = +2 Query: 200 FHTPCTVRWSCLLYEE---VR--KHSAPLSQATNTSSSKLLHME 316 +H PC + CLL+EE VR KH PL N ++ L E Sbjct: 1935 YHYPCAIDADCLLHEENFSVRCPKHKCPLPPLQNKTAKGSLSTE 1978
>NCAP_VHSV0 (P24378) Nucleocapsid protein (Nucleoprotein)| Length = 404 Score = 28.9 bits (63), Expect = 3.2 Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 5/82 (6%) Frame = -3 Query: 305 EALKRMYSLLEKVE-----QSVYALLRTRDMTTARYKEYGIPVDWLSDSGKVGKIKLASV 141 E+ +R+ L+ +V Q YA++ +R + + YK YG L+D+ K+ I Sbjct: 254 ESARRIIQLMRQVSEAKSIQERYAIMMSRMLGESYYKSYG-----LNDNSKISYI---LS 305 Query: 140 QLARKYMERVTSELDALQGTDK 75 Q++ KY L+ ++ T+K Sbjct: 306 QISGKYAVDSLEGLEGIKVTEK 327
>EX7S_CLOAB (Q97HD1) Probable exodeoxyribonuclease VII small subunit (EC| 3.1.11.6) (Exonuclease VII small subunit) Length = 77 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 10/53 (18%) Frame = -3 Query: 374 YQDLVKLENKATSFVDDPKLPCEEALK----------RMYSLLEKVEQSVYAL 246 Y+ ++K K S +++ +LP EEA+K ++Y +L K E + L Sbjct: 8 YESMIKELEKIVSSMENEELPLEEAMKNYEDGVKLCDKLYKILNKAEGKIKLL 60
>RPOD_LEPIN (P59117) RNA polymerase sigma factor rpoD| Length = 585 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/77 (22%), Positives = 42/77 (54%) Frame = -3 Query: 275 EKVEQSVYALLRTRDMTTARYKEYGIPVDWLSDSGKVGKIKLASVQLARKYMERVTSELD 96 EKV Q + +R T+ +YKE+ +D S ++ + + +++K +++++ ++ Sbjct: 192 EKVLQEAVSKIRKYSETSKKYKEFKEKID---ASTEIIHNAIRELGVSQKEIQKISQKIK 248 Query: 95 ALQGTDKEPNREFLLLQ 45 ++ KE +R FL ++ Sbjct: 249 SMVFRIKEIDRHFLKIK 265
>RPOD_LEPIC (P61540) RNA polymerase sigma factor rpoD| Length = 585 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/77 (22%), Positives = 42/77 (54%) Frame = -3 Query: 275 EKVEQSVYALLRTRDMTTARYKEYGIPVDWLSDSGKVGKIKLASVQLARKYMERVTSELD 96 EKV Q + +R T+ +YKE+ +D S ++ + + +++K +++++ ++ Sbjct: 192 EKVLQEAVSKIRKYSETSKKYKEFKEKID---ASTEIIHNAIRELGVSQKEIQKISQKIK 248 Query: 95 ALQGTDKEPNREFLLLQ 45 ++ KE +R FL ++ Sbjct: 249 SMVFRIKEIDRHFLKIK 265
>FBX18_HUMAN (Q8NFZ0) F-box only protein 18 (EC 3.6.1.-) (F-box DNA helicase 1)| Length = 1043 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -3 Query: 317 LPCEEALKRMYSLLEKVEQSVYALLRTRDM 228 LPC+EAL + SL +V + V+A L D+ Sbjct: 203 LPCQEALSHICSLPSEVLRHVFAFLPVEDL 232
>PK1L1_MOUSE (Q8R526) Polycystic kidney disease 1-like 1 protein| (Polycystin-1L1) (Fragment) Length = 531 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/56 (26%), Positives = 28/56 (50%) Frame = +2 Query: 209 PCTVRWSCLLYEEVRKHSAPLSQATNTSSSKLLHMEVLDHRQRM*PCSLVSPGPDT 376 P + + L++ RKH + + ++K L +E+ +H + P S +S PDT Sbjct: 457 PLMICLAALVFAWKRKHDSKFFTESLQDATKGLDLELEEHSRTRVPLSPISYSPDT 512
>RELA_STREQ (Q54089) Putative GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP| 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase) (Stringent response-like protein) Length = 739 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/54 (25%), Positives = 26/54 (48%) Frame = -3 Query: 245 LRTRDMTTARYKEYGIPVDWLSDSGKVGKIKLASVQLARKYMERVTSELDALQG 84 +RT++M + EYG+ W G GK+ A ++ +++ + DA G Sbjct: 326 IRTKEMH--QVAEYGVAAHWAYKKGVRGKVNQAEQKVGMNWIKELVELQDASNG 377
>LEPA_SYNY3 (P74751) GTP-binding protein lepA| Length = 603 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/28 (53%), Positives = 16/28 (57%) Frame = -1 Query: 265 SRVFTHFFVQET*PPHGTRSMEYQLIGY 182 + V T FF Q G SMEYQLIGY Sbjct: 454 AEVVTDFFDQLKSRTKGYASMEYQLIGY 481
>WNT8_DROME (Q9VFX1) Wnt inhibitor of Dorsal protein precursor (Protein Wnt-8)| (dWnt-8) Length = 309 Score = 27.7 bits (60), Expect = 7.0 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Frame = -3 Query: 230 MTTARYKEYGIPVDWLSDSGKVGKIKLASVQLARKYMERVTSELDALQGTDK----EPNR 63 M+ +Y ++ P+ W +GK K L S Q + ++ D +Q K PNR Sbjct: 22 MSYYQYTQFQAPLSWEDITGKGLKQALDSCQQSFQWQRWNCPSQDFVQKNSKPEENSPNR 81 Query: 62 EFLLLQGVRFAFRVH 18 E + + + A VH Sbjct: 82 EDVYVAAISMAAIVH 96
>MYSP_ONCVO (Q02171) Paramyosin| Length = 879 Score = 27.7 bits (60), Expect = 7.0 Identities = 19/106 (17%), Positives = 49/106 (46%), Gaps = 4/106 (3%) Frame = -3 Query: 377 EYQDLVKLENKATSFVDDPKLPCEEALKRMYSLLEKVEQSVYALLRTRDMTTARYKEYGI 198 EY++ +++ + S ++ K + ++ + LEK + ++ L R ++ E + Sbjct: 331 EYEEQIEIMLQKISQLEKAKSRLQSEVEVLIVDLEKAQNTIAILERAKEQLEKTVNELKV 390 Query: 197 PVDWLS----DSGKVGKIKLASVQLARKYMERVTSELDALQGTDKE 72 +D L+ + + + LA +Q + E+ + +AL +K+ Sbjct: 391 RIDELTVELEAAQREARAALAELQKMKNLYEKAVEQKEALARENKK 436
>APCE_PORPU (P51263) Phycobilisome linker polypeptide (Anchor polypeptide)| (PBS-anchor protein) Length = 886 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/34 (47%), Positives = 19/34 (55%) Frame = -3 Query: 137 LARKYMERVTSELDALQGTDKEPNREFLLLQGVR 36 L R+Y V SE +A TDK RE LQG+R Sbjct: 216 LVREYFNVVISEFEAPSLTDKLRKRESTDLQGLR 249
>MYSP_BRUMA (Q01202) Paramyosin| Length = 880 Score = 27.7 bits (60), Expect = 7.0 Identities = 19/106 (17%), Positives = 49/106 (46%), Gaps = 4/106 (3%) Frame = -3 Query: 377 EYQDLVKLENKATSFVDDPKLPCEEALKRMYSLLEKVEQSVYALLRTRDMTTARYKEYGI 198 EY++ +++ + S ++ K + ++ + LEK + ++ L R ++ E + Sbjct: 331 EYEEQIEIMLQKISQLEKAKSRLQSEVEVLIVDLEKAQNTIAILERAKEQLEKTVNELKV 390 Query: 197 PVDWLS----DSGKVGKIKLASVQLARKYMERVTSELDALQGTDKE 72 +D L+ + + + LA +Q + E+ + +AL +K+ Sbjct: 391 RIDELTVELEAAQREARAALAELQKLKNLYEKAVEQKEALARENKK 436
>BBS1_HUMAN (Q8NFJ9) Bardet-Biedl syndrome 1 protein (BBS2-like protein 2)| Length = 593 Score = 27.7 bits (60), Expect = 7.0 Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Frame = -3 Query: 365 LVKLENKATSFVD---DPKLPCEEALKRMYSLLEKVEQSVYALLRTRDMTTARYKEYGIP 195 ++K+ + FV+ + P +A+K ++ K V LR R+ TA ++ + Sbjct: 398 IIKILKRTAVFVEGGSEVGPPPAQAMK--LNVPRKTRLYVDQTLREREAGTAMHRAFQTD 455 Query: 194 VDWLSDSGKVGKIKLASVQLARKYMERVTSELDALQGTDKEPNREFLLLQGVRFAFRV 21 + L ++ AR Y++ + S L L T +EP + ++QG+ F++ Sbjct: 456 ------------LYLLRLRAARAYLQALESSLSPLSTTAREPLKLHAVVQGLGPTFKL 501
>CP4C3_DROME (Q9VA27) Cytochrome P450 4c3 (EC 1.14.-.-) (CYPIVC3)| Length = 535 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -3 Query: 128 KYMERVTSELDALQGTDKEPNREFLLLQGVRF 33 +Y ERV ELD++ G DKE L +R+ Sbjct: 363 EYQERVVEELDSIFGDDKETPATMKNLMDMRY 394
>R1B11_SOLDE (Q6L3Y2) Putative late blight resistance protein homolog R1B-11| Length = 1252 Score = 27.7 bits (60), Expect = 7.0 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Frame = -3 Query: 353 ENKATSFVDDPKLPCEEALKRMY-SLLEKVEQSVYALLRTRDMTTARYKEYGIPVDWLSD 177 ENK F + PKL E L Y + +E L+ ++ E+G +W Sbjct: 1040 ENKKALFKNSPKLDDLETLSNPYFARVEDYLSETVDHLKHLEVLELYRVEFGDHGEWKVS 1099 Query: 176 SGKVGKIKL 150 SGK K+K+ Sbjct: 1100 SGKFPKLKI 1108
>PROA_CORML (P0C1E1) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 432 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = +3 Query: 6 SSKLMNTEGKSDALEKQELPVGLFVRALQRVELRRDPLHVLPCQ 137 S + G S A+ V + L+R EL R+ + +LPCQ Sbjct: 153 SGNVAFVRGSSTAVHSNTKLVEILQDVLERFELPRETVQLLPCQ 196
>ACTB_DICDI (P24005) Calcium-regulated actin bundling protein (34 kDa| actin-binding protein) Length = 295 Score = 27.3 bits (59), Expect = 9.2 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Frame = -3 Query: 359 KLENKATSF-VDDPKLPCEEALKRMYSLLEKVEQSVYALLRTRDMTTARYKEYGIPVDWL 183 K +N AT++ + P++ ALKR L EKV+ + + + +YK++ P D+ Sbjct: 114 KNKNYATTYPISQPQMLT--ALKRKQELREKVDVNFDGRVSFLEYLLYQYKDFANPADFC 171 Query: 182 SDSGKVGKIKLASVQLARKYMERVTSELDALQ 87 + S + + ++ AR +E V + A + Sbjct: 172 TRS--MNHDEHPEIKKARLALEEVNKRIRAYE 201
>Y2446_BDEBA (Q6MKE9) UPF0343 protein Bd2446| Length = 304 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/57 (26%), Positives = 28/57 (49%) Frame = -3 Query: 233 DMTTARYKEYGIPVDWLSDSGKVGKIKLASVQLARKYMERVTSELDALQGTDKEPNR 63 D+ + E P+DW+ +G I+L + + R+ + +DA DK+P+R Sbjct: 8 DVAKETHSERFAPIDWVG----MGAIELPVMLKQADGVYRIPARVDAKVSLDKKPSR 60
>LEPA_GLOVI (Q7NGX4) GTP-binding protein lepA| Length = 602 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = -1 Query: 265 SRVFTHFFVQET*PPHGTRSMEYQLIGY 182 + V T FF Q G SMEYQLIG+ Sbjct: 454 AEVITDFFDQMKSRSRGYASMEYQLIGF 481
>MYSP_DIRIM (P13392) Paramyosin (Fragment)| Length = 848 Score = 27.3 bits (59), Expect = 9.2 Identities = 19/106 (17%), Positives = 49/106 (46%), Gaps = 4/106 (3%) Frame = -3 Query: 377 EYQDLVKLENKATSFVDDPKLPCEEALKRMYSLLEKVEQSVYALLRTRDMTTARYKEYGI 198 EY++ +++ + S ++ K + ++ + LEK + ++ L R ++ E + Sbjct: 304 EYEEQIEIMLQKISQLEKAKSRLQSEVEVLIVDLEKAQNTIAILERAKEQLEKTVNELKV 363 Query: 197 PVDWLS----DSGKVGKIKLASVQLARKYMERVTSELDALQGTDKE 72 +D L+ + + + LA +Q + E+ + +AL +K+ Sbjct: 364 RIDELTVELEAAQREARAALAELQKMKNLYEKAIEQKEALARENKK 409
>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)| (Helicase-like protein NHL) Length = 1400 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 3/28 (10%) Frame = -2 Query: 78 QRAQQGVLASP---GRQICLPCSSVCWR 4 Q+ G+L SP G+ +CL C+++ WR Sbjct: 33 QQKVNGILESPTGTGKTLCLLCTTLAWR 60
>RIR2_LEIAM (O46310) Ribonucleoside-diphosphate reductase small chain (EC| 1.17.4.1) (Ribonucleotide reductase small subunit) (Ribonucleotide reductase M2 subunit) Length = 345 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/53 (26%), Positives = 25/53 (47%) Frame = -3 Query: 368 DLVKLENKATSFVDDPKLPCEEALKRMYSLLEKVEQSVYALLRTRDMTTARYK 210 D + +EN A F+ D K+P A ++E + Y++L +T + K Sbjct: 93 DGIVIENLAQRFMSDVKVPEARAFYGFQLMMENIHSETYSVLLDTYITDSEEK 145
>YFBN_ECOLI (P76484) Hypothetical protein yfbN| Length = 238 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = -3 Query: 194 VDWLSDSGKVGKIKLASVQLARKYMERVTSELD 96 ++WLS+ K+ K +Q+AR+ +ER ++D Sbjct: 1 MEWLSEIRKLRKNVPVGIQVARRLLERTGGDVD 33
>CCNB_CHLVR (P51987) G2/mitotic-specific cyclin-B| Length = 392 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = -3 Query: 311 CEEALKRMYSLLEKVEQSVYALLRTRDMTTARYKEYGIPVDWL 183 C E +K +Y + K+EQ + + T +K I VDWL Sbjct: 131 CAEYVKDIYKYMNKLEQRLVPGDYMPNQTEINFKMRSILVDWL 173 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,184,958 Number of Sequences: 219361 Number of extensions: 1068685 Number of successful extensions: 3715 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3650 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3714 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
