ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21m06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_463160.1| Oryza sativa (japonica cultivar-group), mRNA 62 1e-06
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 62 1e-06
3gb|AC136972.3| Oryza sativa chromosome 3 BAC OSJNBb0007E22 genom... 62 1e-06
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
5dbj|AB125311.1| Oryza sativa (japonica cultivar-group) SAPK10 mR... 62 1e-06
6dbj|AK100538.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
7gb|AY216939.1| Plasmodium vivax strain Belem YAC1H14-like sequence 48 0.021
8gb|AY216938.1| Plasmodium vivax strain IndiaVII YAC1H14-like seq... 48 0.021
9gb|AY216937.1| Plasmodium vivax strain Salvador I YAC1H14-like s... 48 0.021
10gb|AY216936.1| Plasmodium vivax strain Thai-NYU YAC1H14-like seq... 48 0.021
11gb|AY003872.1| Plasmodium vivax YAC 1H14, complete sequence 48 0.021
12dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.021
13dbj|AB125310.1| Oryza sativa (japonica cultivar-group) SAPK9 mRN... 48 0.021
14dbj|AK069697.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.021
15gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.021
16emb|AL844880.3|CNS08CB3 Oryza sativa chromosome 12, . BAC OSJNBb... 48 0.021
17gb|DQ191635.1| Solanum tuberosum serine/threonine protein kinase... 44 0.33
18gb|AF396866.1|AF396866 Bacteriophage Mx8, complete genome 40 5.1
19dbj|AK112448.1| Ciona intestinalis cDNA, clone:ciad067h19, full ... 40 5.1 
>ref|XM_463160.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1089

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                        
Query: 320  tcacatggcatatacgatctccccgctgctttccacgtcgaggtcggcgtccgaatcaag 379
            |||||| || ||||| |||||||| |||||||||||||| || |||| ||| ||||||||
Sbjct: 1089 tcacatagcgtatactatctccccactgctttccacgtcaagatcggggtctgaatcaag 1030

               
Query: 380  gtc 382
            |||
Sbjct: 1029 gtc 1027
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                            
Query: 320      tcacatggcatatacgatctccccgctgctttccacgtcgaggtcggcgtccgaatcaag 379
                |||||| || ||||| |||||||| |||||||||||||| || |||| ||| ||||||||
Sbjct: 22877024 tcacatagcgtatactatctccccactgctttccacgtcaagatcggggtctgaatcaag 22877083

                   
Query: 380      gtc 382
                |||
Sbjct: 22877084 gtc 22877086
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>gb|AC136972.3| Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete
             sequence
          Length = 184783

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                         
Query: 320   tcacatggcatatacgatctccccgctgctttccacgtcgaggtcggcgtccgaatcaag 379
             |||||| || ||||| |||||||| |||||||||||||| || |||| ||| ||||||||
Sbjct: 79554 tcacatagcgtatactatctccccactgctttccacgtcaagatcggggtctgaatcaag 79613

                
Query: 380   gtc 382
             |||
Sbjct: 79614 gtc 79616
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                            
Query: 320      tcacatggcatatacgatctccccgctgctttccacgtcgaggtcggcgtccgaatcaag 379
                |||||| || ||||| |||||||| |||||||||||||| || |||| ||| ||||||||
Sbjct: 22870052 tcacatagcgtatactatctccccactgctttccacgtcaagatcggggtctgaatcaag 22870111

                   
Query: 380      gtc 382
                |||
Sbjct: 22870112 gtc 22870114
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>dbj|AB125311.1| Oryza sativa (japonica cultivar-group) SAPK10 mRNA for
            serine/threonine protein kinase SAPK10, complete cds
          Length = 1595

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                        
Query: 320  tcacatggcatatacgatctccccgctgctttccacgtcgaggtcggcgtccgaatcaag 379
            |||||| || ||||| |||||||| |||||||||||||| || |||| ||| ||||||||
Sbjct: 1170 tcacatagcgtatactatctccccactgctttccacgtcaagatcggggtctgaatcaag 1111

               
Query: 380  gtc 382
            |||
Sbjct: 1110 gtc 1108
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>dbj|AK100538.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102D08, full
            insert sequence
          Length = 1595

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                        
Query: 320  tcacatggcatatacgatctccccgctgctttccacgtcgaggtcggcgtccgaatcaag 379
            |||||| || ||||| |||||||| |||||||||||||| || |||| ||| ||||||||
Sbjct: 1170 tcacatagcgtatactatctccccactgctttccacgtcaagatcggggtctgaatcaag 1111

               
Query: 380  gtc 382
            |||
Sbjct: 1110 gtc 1108
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>gb|AY216939.1| Plasmodium vivax strain Belem YAC1H14-like sequence
          Length = 101016

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 203   tttgtgggctatcaagcatgagca 226
             ||||||||||||||||||||||||
Sbjct: 19086 tttgtgggctatcaagcatgagca 19063
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>gb|AY216938.1| Plasmodium vivax strain IndiaVII YAC1H14-like sequence
          Length = 101158

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 203   tttgtgggctatcaagcatgagca 226
             ||||||||||||||||||||||||
Sbjct: 19178 tttgtgggctatcaagcatgagca 19155
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>gb|AY216937.1| Plasmodium vivax strain Salvador I YAC1H14-like sequence
          Length = 101095

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 203   tttgtgggctatcaagcatgagca 226
             ||||||||||||||||||||||||
Sbjct: 19086 tttgtgggctatcaagcatgagca 19063
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>gb|AY216936.1| Plasmodium vivax strain Thai-NYU YAC1H14-like sequence
          Length = 101002

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 203   tttgtgggctatcaagcatgagca 226
             ||||||||||||||||||||||||
Sbjct: 19084 tttgtgggctatcaagcatgagca 19061
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>gb|AY003872.1| Plasmodium vivax YAC 1H14, complete sequence
          Length = 199866

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 203   tttgtgggctatcaagcatgagca 226
             ||||||||||||||||||||||||
Sbjct: 65350 tttgtgggctatcaagcatgagca 65327
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                            
Query: 322      acatggcatatacgatctccccgctgct 349
                ||||||||||||||||||| ||||||||
Sbjct: 24493170 acatggcatatacgatctctccgctgct 24493197
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>dbj|AB125310.1| Oryza sativa (japonica cultivar-group) SAPK9 mRNA for
            serine/threonine protein kinase SAPK9, complete cds
          Length = 1519

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 322  acatggcatatacgatctccccgctgct 349
            ||||||||||||||||||| ||||||||
Sbjct: 1132 acatggcatatacgatctctccgctgct 1105
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>dbj|AK069697.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028J06, full
            insert sequence
          Length = 1641

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 322  acatggcatatacgatctccccgctgct 349
            ||||||||||||||||||| ||||||||
Sbjct: 1296 acatggcatatacgatctctccgctgct 1269
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                            
Query: 322      acatggcatatacgatctccccgctgct 349
                ||||||||||||||||||| ||||||||
Sbjct: 24421376 acatggcatatacgatctctccgctgct 24421403
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>emb|AL844880.3|CNS08CB3 Oryza sativa chromosome 12, . BAC OSJNBb0049H14 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 120071

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 322   acatggcatatacgatctccccgctgct 349
             ||||||||||||||||||| ||||||||
Sbjct: 64201 acatggcatatacgatctctccgctgct 64228
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>gb|DQ191635.1| Solanum tuberosum serine/threonine protein kinase SAPK8-like protein
            mRNA, complete cds
          Length = 1622

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 320  tcacatggcatatacgatctccccgctgct 349
            |||||| ||||||| |||||||||||||||
Sbjct: 1318 tcacattgcatatatgatctccccgctgct 1289
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>gb|AF396866.1|AF396866 Bacteriophage Mx8, complete genome
          Length = 49534

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 352   ccacgtcgaggtcggcgtcc 371
             ||||||||||||||||||||
Sbjct: 11753 ccacgtcgaggtcggcgtcc 11734
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>dbj|AK112448.1| Ciona intestinalis cDNA, clone:ciad067h19, full insert sequence
          Length = 2275

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 2   tacaacacatatacatggtncaa 24
           ||||||||||||||||||| |||
Sbjct: 857 tacaacacatatacatggtacaa 835


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,918,432
Number of Sequences: 3902068
Number of extensions: 1918432
Number of successful extensions: 28984
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28930
Number of HSP's gapped (non-prelim): 54
length of query: 382
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 360
effective length of database: 17,147,199,772
effective search space: 6172991917920
effective search space used: 6172991917920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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