ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd22b03 |
|---|---|
| Clone Library Name | barley_pub |
>FA18_ARATH (Q8LEK2) FAM18-like protein At1g09330| Length = 186 Score = 170 bits (431), Expect = 2e-42 Identities = 83/116 (71%), Positives = 93/116 (80%) Frame = -2 Query: 552 GLRWXNEIDDDGNSVWKFECLDGESLARMNKKDSWLFWWTLYLNAAAWIILAIFSLIRLE 373 GLRW NEI+D G SVWKFE LD ESLARMNKKDSWLFWWTLYL AAAW IL +FSLIR + Sbjct: 72 GLRWWNEINDLGESVWKFESLDQESLARMNKKDSWLFWWTLYLAAAAWFILGVFSLIRFQ 131 Query: 372 ADYLLVVGVCLTLSLANIVGFTKCNKDAKKNIRAFAENAAQNAITSRITSSLQSAF 205 ADYLLVVGVCL+L++ANI+GFTKC KDAKK + F A I SR S++QSAF Sbjct: 132 ADYLLVVGVCLSLNVANIIGFTKCKKDAKKQFQQF----ASQTIASRFQSTVQSAF 183
>FA18_DICDI (Q86I95) Hypothetical FAM18-like protein| Length = 198 Score = 80.1 bits (196), Expect = 4e-15 Identities = 39/107 (36%), Positives = 64/107 (59%) Frame = -2 Query: 552 GLRWXNEIDDDGNSVWKFECLDGESLARMNKKDSWLFWWTLYLNAAAWIILAIFSLIRLE 373 GLRW N+I +DG + W FE + +S ++N +S +FW + AAW + +I SL L Sbjct: 89 GLRWWNQIKEDGTNNWVFESVQDKS--QVNPAESLMFWVPVLAFTAAWFVFSIISLFGLS 146 Query: 372 ADYLLVVGVCLTLSLANIVGFTKCNKDAKKNIRAFAENAAQNAITSR 232 +L+V VC L+ AN++G+ KC KDA+K ++ A++ I ++ Sbjct: 147 FLWLVVEIVCFLLAGANLLGYIKCAKDARKKVKGMAQSYIVGTIVNQ 193
>FA18_DROME (Q8IQC1) FAM18-like protein CG5021| Length = 223 Score = 79.0 bits (193), Expect = 9e-15 Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 1/97 (1%) Frame = -2 Query: 552 GLRWXNEIDDDGNSVWKFECLDGESL-ARMNKKDSWLFWWTLYLNAAAWIILAIFSLIRL 376 GLRW N +DDDG S W FE + ES +R+NK + +FW L L W + +F+L L Sbjct: 93 GLRWWNYVDDDGVSHWVFESKNSESYQSRVNKNEQRIFWLGLILCPVFWGLFFLFALFGL 152 Query: 375 EADYLLVVGVCLTLSLANIVGFTKCNKDAKKNIRAFA 265 + +LL+V + + L+ AN+ G+ KCN A K++ + A Sbjct: 153 KFKWLLLVMIAIALNAANLYGYVKCNYGANKDLNSAA 189
>YGI5_SCHPO (Q9Y7K7) Hypothetical protein C2A9.05c in chromosome II| Length = 219 Score = 77.0 bits (188), Expect = 3e-14 Identities = 41/110 (37%), Positives = 57/110 (51%) Frame = -2 Query: 552 GLRWXNEIDDDGNSVWKFECLDGESLARMNKKDSWLFWWTLYLNAAAWIILAIFSLIRLE 373 GLRW NE DG S+W FE D N D FW+ LYL WIIL I ++IR E Sbjct: 103 GLRWRNETGVDGESIWIFESADPSR--PRNAVDQKTFWYALYLYPFIWIILGIVAIIRFE 160 Query: 372 ADYLLVVGVCLTLSLANIVGFTKCNKDAKKNIRAFAENAAQNAITSRITS 223 +L +V V + L+ N +++C+KDAK+ ++ + SR S Sbjct: 161 FLWLALVAVAIGLTSVNTAAYSRCDKDAKRRWATELADSNSSGFVSRFLS 210
>FA18B_MOUSE (Q9D8T4) Protein FAM18B| Length = 205 Score = 63.5 bits (153), Expect = 4e-10 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 2/98 (2%) Frame = -2 Query: 552 GLRWXNEIDDDGNSVWKFECLDG--ESLARMNKKDSWLFWWTLYLNAAAWIILAIFSLIR 379 GLRW N ID+DG S W FE + +++ +S +FW L W+I A +L Sbjct: 89 GLRWWNHIDEDGKSHWVFESRKSTPQDNKTISEAESRIFWLGLIACPVLWVIFAFSALFS 148 Query: 378 LEADYLLVVGVCLTLSLANIVGFTKCNKDAKKNIRAFA 265 +L VV + + L AN+ G+ +C +KKN+ + A Sbjct: 149 FRVKWLAVVIMGVVLQGANLYGYIRCKVGSKKNLTSMA 186
>YC2L_CAEEL (Q18449) Hypothetical protein C34D4.4 in chromosome IV| Length = 247 Score = 63.2 bits (152), Expect = 5e-10 Identities = 29/100 (29%), Positives = 56/100 (56%) Frame = -2 Query: 552 GLRWXNEIDDDGNSVWKFECLDGESLARMNKKDSWLFWWTLYLNAAAWIILAIFSLIRLE 373 GLRW N +D DGN+ WKFE + + R D +FW L + AAWI + + + L+ Sbjct: 128 GLRWWNFVDADGNNHWKFE--SAKDMTRFATIDRRVFWLGLVVGPAAWIFFVVTAFLTLK 185 Query: 372 ADYLLVVGVCLTLSLANIVGFTKCNKDAKKNIRAFAENAA 253 ++++V + +++AN+ G+ +C + + + ++ + A Sbjct: 186 FEWMIVALLGALMNMANLWGYLRCRWNNTEQMTSYFQKWA 225
>FA18B_PONPY (Q5R9I4) Protein FAM18B| Length = 205 Score = 63.2 bits (152), Expect = 5e-10 Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 2/98 (2%) Frame = -2 Query: 552 GLRWXNEIDDDGNSVWKFECLDGESLAR--MNKKDSWLFWWTLYLNAAAWIILAIFSLIR 379 GLRW N ID+DG S W FE S +++ +S +FW L W+I A +L Sbjct: 89 GLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACPVLWVIFAFSALFS 148 Query: 378 LEADYLLVVGVCLTLSLANIVGFTKCNKDAKKNIRAFA 265 +L VV + + L AN+ G+ +C ++KN+ + A Sbjct: 149 FRVKWLAVVIMGVVLQGANLYGYIRCKVGSRKNLTSMA 186
>FA18B_HUMAN (Q9NYZ1) Protein FAM18B| Length = 205 Score = 60.8 bits (146), Expect = 2e-09 Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 2/98 (2%) Frame = -2 Query: 552 GLRWXNEIDDDGNSVWKFECLDGESLAR--MNKKDSWLFWWTLYLNAAAWIILAIFSLIR 379 GLRW N ID+DG S W FE S +++ +S +FW L W+I A +L Sbjct: 89 GLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACPVLWVIFAFSALFS 148 Query: 378 LEADYLLVVGVCLTLSLANIVGFTKCNKDAKKNIRAFA 265 +L VV + + L AN+ G+ +C ++K++ + A Sbjct: 149 FRVKWLAVVIMGVVLQGANLYGYIRCKVRSRKHLTSMA 186
>TVP23_YEAST (P38962) TLG2-vesicle protein of 23 kDa| Length = 199 Score = 52.8 bits (125), Expect = 7e-07 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Frame = -2 Query: 543 WXNEIDDDGNSVWKFECLDGESLAR-MNKKDSWLFWWTLYLNAAAWIILAIFSLIRLEAD 367 W + D + +S + FE + +N DS LFWW++Y+ W + A+ L+RL+ Sbjct: 75 WYDSTDVNKDSNFTFESYKQYAPGPPINAIDSKLFWWSMYVTPVIWGVFAVLCLLRLKIF 134 Query: 366 YLLVVGVCLTLSLANIVGFTKCNK 295 YL++V V + L+ N GF C++ Sbjct: 135 YLILVIVAMCLTAWNTYGFRCCDR 158
>F18B2_HUMAN (Q96ET8) Protein FAM18B2| Length = 276 Score = 44.7 bits (104), Expect = 2e-04 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Frame = -2 Query: 552 GLRWXNEIDDDGNSVWKFECLDGESLAR--MNKKDSWLFWWTLYLNAAAWIILAIFSLIR 379 GLRW N ID+DG S W FE S +++ +S +FW L + W+I A +L Sbjct: 89 GLRWWNHIDEDGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACSVLWVIFAFSALFS 148 Query: 378 LEADYL 361 +L Sbjct: 149 FTVKWL 154
>DPO3A_MYCGE (Q49405) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 874 Score = 32.3 bits (72), Expect = 0.92 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 8/112 (7%) Frame = -2 Query: 408 IILAIFSLIRLEADYLLVVGVCLTLSLANIVGFTKC--NKDAK---KNIRAFAENAAQNA 244 I+ + ++ + + +V V SL F + KD K KN R F E A QN Sbjct: 614 IVKNTYGVLIFQEQIINIVKVVANYSLEEADSFRRAISKKDVKLIQKNKRNFFERAVQNN 673 Query: 243 ITSRITSSLQS---AFGI*SPDXTEAQNYIQLCYLLSKISL*YPVFM*FWLI 97 + T+ + S F + + A Y L Y + + YPV+ WL+ Sbjct: 674 FDLKTTTKIFSYIERFANYGFNLSHALGYALLSYWTAWLKTNYPVYFYLWLL 725
>PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presynaptic| cytomatrix protein) (Brain-derived HLMN protein) Length = 5038 Score = 31.2 bits (69), Expect = 2.0 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 8/76 (10%) Frame = -3 Query: 326 QTSWGSPNATKMPRRTSELLLKMPLKTPSHPASHHP--------CSQHSASEVQIXQRPK 171 Q G P+A + + S+ + PL+ P A+ P C + +E+ + K Sbjct: 458 QPGLGKPSAQQPSKSISQTVTGRPLQAPPTSAAQAPAQGLSKTICPLCNTTELLLHTPEK 517 Query: 170 ITYNCVTFCQRSACDI 123 +N T CQ + C + Sbjct: 518 ANFNTCTECQSTVCSL 533
>TBX6_BRARE (P79742) T-box transcription factor TBX6 (T-box protein 6)| Length = 473 Score = 29.3 bits (64), Expect = 7.8 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = +1 Query: 391 KYRKNDPCSSVQVKSPPEQP*VFFVHPSERLP 486 KY+ N C V S P P FF+HP P Sbjct: 93 KYKWNKDCWEVNGSSDPHLPNRFFIHPDSPAP 124
>OSBP1_RABIT (P16258) Oxysterol-binding protein 1| Length = 809 Score = 29.3 bits (64), Expect = 7.8 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Frame = -2 Query: 459 KDSWLFWWTLYLNA--AAWIILA--IFSLIRLEADYLLVVGVCLTLSLANIVGFTKCN 298 ++ WLF WT Y+ W +L+ + S R +A+ + L+ ANI CN Sbjct: 93 REGWLFKWTNYIKGYQRRWFVLSNGLLSYYRSKAEMRHTCRGTINLATANITVEDSCN 150
>PROX1_MOUSE (P48437) Homeobox prospero-like protein PROX1 (PROX 1)| Length = 737 Score = 29.3 bits (64), Expect = 7.8 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = -3 Query: 311 SPNATKMPRRTSELLLKMPLKTPSHPASHHPCS 213 SP + + R T+ L KM SH SHHPCS Sbjct: 511 SPESLDLTRDTTSLRTKMS----SHHLSHHPCS 539
>PROX1_HUMAN (Q92786) Homeobox prospero-like protein PROX1 (PROX 1)| Length = 737 Score = 29.3 bits (64), Expect = 7.8 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = -3 Query: 311 SPNATKMPRRTSELLLKMPLKTPSHPASHHPCS 213 SP + + R T+ L KM SH SHHPCS Sbjct: 511 SPESLDLTRDTTSLRTKMS----SHHLSHHPCS 539
>OSBP1_HUMAN (P22059) Oxysterol-binding protein 1| Length = 807 Score = 29.3 bits (64), Expect = 7.8 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Frame = -2 Query: 459 KDSWLFWWTLYLNA--AAWIILA--IFSLIRLEADYLLVVGVCLTLSLANIVGFTKCN 298 ++ WLF WT Y+ W +L+ + S R +A+ + L+ ANI CN Sbjct: 91 REGWLFKWTNYIKGYQRRWFVLSNGLLSYYRSKAEMRHTCRGTINLATANITVEDSCN 148 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,557,462 Number of Sequences: 219361 Number of extensions: 1380032 Number of successful extensions: 3881 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3762 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3872 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4488201198 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
