ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22a21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7 40 0.004
2C71C4_MAIZE (Q43257) Cytochrome P450 71C4 (EC 1.14.-.-) (Benzoxa... 31 2.4
3OPLA_RAT (P97608) 5-oxoprolinase (EC 3.5.2.9) (5-oxo-L-prolinase... 31 3.2
4DPOL_TUHV2 (Q9YUS2) DNA polymerase (EC 2.7.7.7) 31 3.2
5DPOL_TUHV1 (Q9YUS3) DNA polymerase (EC 2.7.7.7) 31 3.2
6G3O21_WHEAT (Q3I411) Gibberellin 3-beta-dioxygenase 2-1 (EC 1.14... 30 5.4
7UVRA_METTH (O26543) UvrABC system protein A (UvrA protein) (Exci... 30 5.4
8SYI_AERPE (Q9YF67) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 30 7.0
9RN152_MOUSE (Q8BG47) RING finger protein 152 29 9.2
10RN152_HUMAN (Q8N8N0) RING finger protein 152 29 9.2

>ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7|
          Length = 542

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = -1

Query: 219 KPGPKQSVRLPS---AIICCSGFAQSHRCGNKCTEEEVFDGSLVKVFTCFVSTLWQI 58
           KPGP +  + PS   A+  C   AQ    G++C E EV+D S V  F C+    ++I
Sbjct: 330 KPGPPKKPKTPSRPSALAYCYHCAQKGHYGHECPEREVYDPSPVSPFICYYDDKYEI 386



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>C71C4_MAIZE (Q43257) Cytochrome P450 71C4 (EC 1.14.-.-) (Benzoxazineless 2)|
          Length = 538

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = +3

Query: 375 AVDEAVEVPHVLLLQGHGVDHVVVAGEH----PQVPGLDSLQASAAERARLRPCVPVTMM 542
           A+ E +  PH++      V   V AG+       +PG+  L+A   E  RL P VP+ + 
Sbjct: 349 AMTELIRKPHLMKKLQEEVRRNVPAGQEMVTEDNLPGMTDLKAVIKETLRLHPPVPLLLP 408

Query: 543 H 545
           H
Sbjct: 409 H 409



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>OPLA_RAT (P97608) 5-oxoprolinase (EC 3.5.2.9) (5-oxo-L-prolinase)|
           (Pyroglutamase) (5-OPase)
          Length = 1288

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
 Frame = +2

Query: 65  QSVDTKQVKTFTRDPSNTSSSVHLLPQRCDCA----KPEQQIMALGKRTDCFGPGFACQT 232
           Q VD  QV+ F R   +T S +HL  Q  DCA      +    A   R   FG  F  + 
Sbjct: 557 QCVDALQVQGFPRSQISTESFLHLRYQGTDCALMVSAHQHPATACSPRAGDFGAAFVERY 616

Query: 233 XSAEDGRLPENP 268
                  +PE P
Sbjct: 617 MREFGFIIPERP 628



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>DPOL_TUHV2 (Q9YUS2) DNA polymerase (EC 2.7.7.7)|
          Length = 1171

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -1

Query: 597 FLLCSLFAANVIKPNI*YASWLQVHKVSVV--PFLPRKPEESPVQGPVGA 454
           F   SL+ + ++  N+ Y++WL+    +    P  P +P E+P  GP GA
Sbjct: 621 FDFASLYPSIIMAHNLCYSTWLRDDPGTPARPPETPARPPETPAAGPSGA 670



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>DPOL_TUHV1 (Q9YUS3) DNA polymerase (EC 2.7.7.7)|
          Length = 1171

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -1

Query: 597 FLLCSLFAANVIKPNI*YASWLQVHKVSVV--PFLPRKPEESPVQGPVGA 454
           F   SL+ + ++  N+ Y++WL+    +    P  P +P E+P  GP GA
Sbjct: 621 FDFASLYPSIIMAHNLCYSTWLRDDPGTPARPPETPARPPETPAAGPSGA 670



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>G3O21_WHEAT (Q3I411) Gibberellin 3-beta-dioxygenase 2-1 (EC 1.14.11.15)|
           (Gibberellin 3 beta-hydroxylase 2-1) (Gibberellin
           3-oxidase 2-1)
          Length = 370

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 411 LLQGHGVDHVVVAGEHPQVPGLDSLQASAAERARLRP 521
           LL+GHGV   ++AG    + G+ +L AS   RA  RP
Sbjct: 74  LLEGHGVPLELLAGVEAAIGGMFALPASEKMRAVRRP 110



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>UVRA_METTH (O26543) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 962

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -2

Query: 530 RYTRSQSCPFCRGSLKRVQSRDLWVLTGDDDVIDPVTLEKENVRHFHSFIDSLPL 366
           R+  + +CP C GS  R++   L V      + D V +   ++R  H F DSL L
Sbjct: 409 RFMSNHACPVCGGS--RLRPESLSVTINGRSIHDVVEM---SIREAHEFFDSLKL 458



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>SYI_AERPE (Q9YF67) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 1064

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 578 LLQMSSNRTSNMHHGYRYTRSQSCPFCRGSLKRVQS-RDLWVLTG 447
           L  M   R  N+H  +       CP C GS+KRV    D+W  +G
Sbjct: 491 LESMGGRRPENLHRPWVDRVELKCPRCGGSMKRVPDVLDVWFDSG 535



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>RN152_MOUSE (Q8BG47) RING finger protein 152|
          Length = 203

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 593 CCALCLLQMSSNRTSNMHHGYRYTRSQSCPFCRGSLKRVQSRDLWVLTGDDDVIDPVTL 417
           CC++CL QM   RTS         +   CP+CRG  K      +  L  D +V+  + +
Sbjct: 34  CCSVCLQQM---RTSQ--------KDVRCPWCRGITKLPPGFSVSQLPDDPEVLAVIAI 81



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>RN152_HUMAN (Q8N8N0) RING finger protein 152|
          Length = 203

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 593 CCALCLLQMSSNRTSNMHHGYRYTRSQSCPFCRGSLKRVQSRDLWVLTGDDDVIDPVTL 417
           CC++CL QM   RTS         +   CP+CRG  K      +  L  D +V+  + +
Sbjct: 34  CCSVCLQQM---RTSQ--------KDVRCPWCRGVTKLPPGFSVSQLPDDPEVLAVIAI 81


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,448,087
Number of Sequences: 219361
Number of extensions: 1434765
Number of successful extensions: 4579
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4577
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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