ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd22a21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY107932.1| Zea mays PCO078506 mRNA sequence 295 9e-77
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 285 8e-74
3dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic D... 285 8e-74
4dbj|AP006839.2| Oryza sativa (japonica cultivar-group) genomic D... 285 8e-74
5dbj|AK106188.1| Oryza sativa (japonica cultivar-group) cDNA clon... 281 1e-72
6dbj|AK104453.1| Oryza sativa (japonica cultivar-group) cDNA clon... 281 1e-72
7dbj|AK099185.1| Oryza sativa (japonica cultivar-group) cDNA clon... 281 1e-72
8dbj|AK060020.1| Oryza sativa (japonica cultivar-group) cDNA clon... 281 1e-72
9emb|AJ620335.1| Oryza sativa (indica cultivar-group) mRNA for E3... 48 0.034
10emb|AJ867287.1| Oryza sativa (indica cultivar-group) mRNA for ub... 48 0.034
11gb|AC146937.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.53
12gb|AC148822.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.53
13dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
14gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.53
15gb|AC121767.3| Mus musculus BAC clone RP23-339E1 from chromosome... 42 2.1
16gb|AC118928.13| Mus musculus chromosome 16, clone RP23-416J10, c... 42 2.1
17emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genom... 42 2.1
18gb|AC154606.2| Mus musculus BAC clone RP23-252E10 from chromosom... 42 2.1
19gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 2.1
20emb|AL844889.5| Mouse DNA sequence from clone RP23-35D6 on chrom... 42 2.1
21emb|AL806522.4| Mouse DNA sequence from clone RP23-167H2 on chro... 42 2.1
22ref|XM_477429.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.2
23gb|AC156620.10| Mus musculus chromosome 5, clone RP23-80G18, com... 40 8.2
24gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.2
25gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosom... 40 8.2
26emb|CT010495.9| Mouse DNA sequence from clone RP23-226G14 on chr... 40 8.2
27gb|AC122246.5| Mus musculus BAC clone RP23-152K13 from 1, comple... 40 8.2
28gb|BC043890.1| Xenopus laevis chondromodulin-I precursor, mRNA (... 40 8.2
29emb|CR956420.2| Pig DNA sequence from clone CH242-37G9 on chromo... 40 8.2
30gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 8.2
31emb|AL445672.15| Human DNA sequence from clone RP11-66D1 on chro... 40 8.2
32emb|AL356503.18| Human DNA sequence from clone RP13-159A24 on ch... 40 8.2
33gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 8.2
34emb|AL033539.18|HS309H15 Human DNA sequence from clone RP1-309H1... 40 8.2
35emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete ... 40 8.2
36emb|BX640426.1| Bordetella parapertussis strain 12822, complete ... 40 8.2
37emb|BX640419.1| Bordetella pertussis strain Tohama I, complete g... 40 8.2
38emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete ... 40 8.2
39gb|AC113029.23| Mus musculus chromosome 5, clone RP23-206J17, co... 40 8.2
40gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 8.2
41gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 8.2
42gb|AC157653.2| Mus musculus BAC clone RP24-325H17 from chromosom... 40 8.2
43dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
44dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
45dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
46ref|XM_577795.1| PREDICTED: Rattus norvegicus similar to LRRGT00... 40 8.2
47dbj|AP005475.4| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
48dbj|AP005673.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
49gb|AC154423.2| Mus musculus BAC clone RP24-221B7 from 17, comple... 40 8.2
50emb|CT806423.2| Pan troglodytes chromosome X clone CH251-25B01 m... 40 8.2
51gb|AC107776.12| Mus musculus chromosome 17, clone RP23-92G2, com... 40 8.2
52emb|CR956387.14| Pig DNA sequence from clone CH242-148I13 on chr... 40 8.2
53gb|AC149607.6| Mus musculus BAC clone RP23-455C13 from chromosom... 40 8.2 
>gb|AY107932.1| Zea mays PCO078506 mRNA sequence
          Length = 920

 Score =  295 bits (149), Expect = 9e-77
 Identities = 197/213 (92%)
 Strand = Plus / Minus

                                                                       
Query: 317 gctagactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggc 376
           |||||||||||||||| |||||||||||||| | ||||||||||||||| ||||||||||
Sbjct: 539 gctagactaggtagtcgtagtagaccagcagcatgttgtcggggacgatcaggggcaggc 480

                                                                       
Query: 377 tgtcgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatca 436
           |||||||||||||| |||||||| ||||||||||||||||||| ||||| | ||||||||
Sbjct: 479 tgtcgatgaagctgaggaagtgcttcacgttctccttctccagcgtcaccgtgtcgatca 420

                                                                       
Query: 437 cgtcgtcgtcgccggtgagcacccacaggtccctggactggactctcttcaggcttccgc 496
           ||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||
Sbjct: 419 cgtcgtcgtcgccggtgagcacccacaggtctctggaccggaccctcttcaggctcccgc 360

                                            
Query: 497 ggcagaaagggcacgactgagaccttgtgtacc 529
           ||||||| ||||| ||||| |||||||||||||
Sbjct: 359 ggcagaacgggcatgactgggaccttgtgtacc 327
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  285 bits (144), Expect = 8e-74
 Identities = 195/212 (91%)
 Strand = Plus / Minus

                                                                            
Query: 320      agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 379
                ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 39425338 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 39425279

                                                                            
Query: 380      cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 439
                ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 39425278 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 39425219

                                                                            
Query: 440      cgtcgtcgccggtgagcacccacaggtccctggactggactctcttcaggcttccgcggc 499
                ||||||| |||||||||||||| |||||||| ||  |||||||||||||||| |||||||
Sbjct: 39425218 cgtcgtctccggtgagcacccagaggtcccttgatcggactctcttcaggctcccgcggc 39425159

                                                
Query: 500      agaaagggcacgactgagaccttgtgtacctg 531
                |||| ||||| |||||||| ||||||||||||
Sbjct: 39425158 agaacgggcatgactgagatcttgtgtacctg 39425127



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                         
Query: 218      ttcgcttgccagactnnatctgcggaggatggtcggctgcc 258
                |||||| ||||||||  |||||| |||||||||||||||||
Sbjct: 39425440 ttcgctagccagactcaatctgcagaggatggtcggctgcc 39425400



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 577      aaacagagagcacagcagaaaata 600
                ||||||||||||||||| ||||||
Sbjct: 10948513 aaacagagagcacagcacaaaata 10948536
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>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
           BAC clone:B1417F08
          Length = 155536

 Score =  285 bits (144), Expect = 8e-74
 Identities = 195/212 (91%)
 Strand = Plus / Minus

                                                                       
Query: 320 agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 379
           ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 352 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 293

                                                                       
Query: 380 cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 439
           ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 292 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 233

                                                                       
Query: 440 cgtcgtcgccggtgagcacccacaggtccctggactggactctcttcaggcttccgcggc 499
           ||||||| |||||||||||||| |||||||| ||  |||||||||||||||| |||||||
Sbjct: 232 cgtcgtctccggtgagcacccagaggtcccttgatcggactctcttcaggctcccgcggc 173

                                           
Query: 500 agaaagggcacgactgagaccttgtgtacctg 531
           |||| ||||| |||||||| ||||||||||||
Sbjct: 172 agaacgggcatgactgagatcttgtgtacctg 141



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 218 ttcgcttgccagactnnatctgcggaggatggtcggctgcc 258
           |||||| ||||||||  |||||| |||||||||||||||||
Sbjct: 454 ttcgctagccagactcaatctgcagaggatggtcggctgcc 414
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>dbj|AP006839.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             fosmid clone:OSJNOa108M02
          Length = 38208

 Score =  285 bits (144), Expect = 8e-74
 Identities = 195/212 (91%)
 Strand = Plus / Minus

                                                                         
Query: 320   agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 379
             ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 35862 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 35803

                                                                         
Query: 380   cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 439
             ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 35802 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 35743

                                                                         
Query: 440   cgtcgtcgccggtgagcacccacaggtccctggactggactctcttcaggcttccgcggc 499
             ||||||| |||||||||||||| |||||||| ||  |||||||||||||||| |||||||
Sbjct: 35742 cgtcgtctccggtgagcacccagaggtcccttgatcggactctcttcaggctcccgcggc 35683

                                             
Query: 500   agaaagggcacgactgagaccttgtgtacctg 531
             |||| ||||| |||||||| ||||||||||||
Sbjct: 35682 agaacgggcatgactgagatcttgtgtacctg 35651



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 218   ttcgcttgccagactnnatctgcggaggatggtcggctgcc 258
             |||||| ||||||||  |||||| |||||||||||||||||
Sbjct: 35964 ttcgctagccagactcaatctgcagaggatggtcggctgcc 35924
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>dbj|AK106188.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-D10, full
           insert sequence
          Length = 1173

 Score =  281 bits (142), Expect = 1e-72
 Identities = 193/210 (91%)
 Strand = Plus / Minus

                                                                       
Query: 320 agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 379
           ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 951 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 892

                                                                       
Query: 380 cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 439
           ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 891 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 832

                                                                       
Query: 440 cgtcgtcgccggtgagcacccacaggtccctggactggactctcttcaggcttccgcggc 499
           ||||||| |||||||||||||| |||||||| ||  |||||||||||||||| |||||||
Sbjct: 831 cgtcgtctccggtgagcacccagaggtcccttgatcggactctcttcaggctcccgcggc 772

                                         
Query: 500 agaaagggcacgactgagaccttgtgtacc 529
           |||| ||||| |||||||| ||||||||||
Sbjct: 771 agaacgggcatgactgagatcttgtgtacc 742



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 218  ttcgcttgccagactnnatctgcggaggatggtcggctgcc 258
            |||||| ||||||||  |||||| |||||||||||||||||
Sbjct: 1053 ttcgctagccagactcaatctgcagaggatggtcggctgcc 1013
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>dbj|AK104453.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-H10, full
           insert sequence
          Length = 1290

 Score =  281 bits (142), Expect = 1e-72
 Identities = 193/210 (91%)
 Strand = Plus / Minus

                                                                       
Query: 320 agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 379
           ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 951 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 892

                                                                       
Query: 380 cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 439
           ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 891 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 832

                                                                       
Query: 440 cgtcgtcgccggtgagcacccacaggtccctggactggactctcttcaggcttccgcggc 499
           ||||||| |||||||||||||| |||||||| ||  |||||||||||||||| |||||||
Sbjct: 831 cgtcgtctccggtgagcacccagaggtcccttgatcggactctcttcaggctcccgcggc 772

                                         
Query: 500 agaaagggcacgactgagaccttgtgtacc 529
           |||| ||||| |||||||| ||||||||||
Sbjct: 771 agaacgggcatgactgagatcttgtgtacc 742



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 218  ttcgcttgccagactnnatctgcggaggatggtcggctgcc 258
            |||||| ||||||||  |||||| |||||||||||||||||
Sbjct: 1053 ttcgctagccagactcaatctgcagaggatggtcggctgcc 1013
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>dbj|AK099185.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105K15, full
           insert sequence
          Length = 1291

 Score =  281 bits (142), Expect = 1e-72
 Identities = 193/210 (91%)
 Strand = Plus / Minus

                                                                       
Query: 320 agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 379
           ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 952 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 893

                                                                       
Query: 380 cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 439
           ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 892 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 833

                                                                       
Query: 440 cgtcgtcgccggtgagcacccacaggtccctggactggactctcttcaggcttccgcggc 499
           ||||||| |||||||||||||| |||||||| ||  |||||||||||||||| |||||||
Sbjct: 832 cgtcgtctccggtgagcacccagaggtcccttgatcggactctcttcaggctcccgcggc 773

                                         
Query: 500 agaaagggcacgactgagaccttgtgtacc 529
           |||| ||||| |||||||| ||||||||||
Sbjct: 772 agaacgggcatgactgagatcttgtgtacc 743



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 218  ttcgcttgccagactnnatctgcggaggatggtcggctgcc 258
            |||||| ||||||||  |||||| |||||||||||||||||
Sbjct: 1054 ttcgctagccagactcaatctgcagaggatggtcggctgcc 1014
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>dbj|AK060020.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-G11, full
           insert sequence
          Length = 1296

 Score =  281 bits (142), Expect = 1e-72
 Identities = 193/210 (91%)
 Strand = Plus / Minus

                                                                       
Query: 320 agactaggtagtcatagtagaccagcaggaggttgtcggggacgatgaggggcaggctgt 379
           ||||||||||||| ||||| ||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 951 agactaggtagtcgtagtacaccagcaagaggttgtcagggactatgaggggcaggctgt 892

                                                                       
Query: 380 cgatgaagctgtggaagtgcctcacgttctccttctccagggtcacggggtcgatcacgt 439
           ||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||
Sbjct: 891 cgatgaagctgtggaagtgcctcacattctccttctccagcgtcacggtgtcgatcacgt 832

                                                                       
Query: 440 cgtcgtcgccggtgagcacccacaggtccctggactggactctcttcaggcttccgcggc 499
           ||||||| |||||||||||||| |||||||| ||  |||||||||||||||| |||||||
Sbjct: 831 cgtcgtctccggtgagcacccagaggtcccttgatcggactctcttcaggctcccgcggc 772

                                         
Query: 500 agaaagggcacgactgagaccttgtgtacc 529
           |||| ||||| |||||||| ||||||||||
Sbjct: 771 agaacgggcatgactgagatcttgtgtacc 742



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 218  ttcgcttgccagactnnatctgcggaggatggtcggctgcc 258
            |||||| ||||||||  |||||| |||||||||||||||||
Sbjct: 1053 ttcgctagccagactcaatctgcagaggatggtcggctgcc 1013
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>emb|AJ620335.1| Oryza sativa (indica cultivar-group) mRNA for E3 ubiquitin ligase
           (ubl gene)
          Length = 762

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                       
Query: 451 gtgagcacccacaggtccctggactggactctcttcaggcttccgcggcagaaagggcac 510
           |||||||||||||||||||| ||  | | ||  || |||||||| |||||||||||||| 
Sbjct: 629 gtgagcacccacaggtcccttgagcgaattcgtttaaggcttcctcggcagaaagggcaa 570

               
Query: 511 gact 514
           ||||
Sbjct: 569 gact 566
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>emb|AJ867287.1| Oryza sativa (indica cultivar-group) mRNA for ubiquitin ligase E3
           (ubl gene)
          Length = 762

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                       
Query: 451 gtgagcacccacaggtccctggactggactctcttcaggcttccgcggcagaaagggcac 510
           |||||||||||||||||||| ||  | | ||  || |||||||| |||||||||||||| 
Sbjct: 629 gtgagcacccacaggtcccttgagcgaattcgtttaaggcttcctcggcagaaagggcaa 570

               
Query: 511 gact 514
           ||||
Sbjct: 569 gact 566
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>gb|AC146937.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0004O15
              map near R3342S, complete sequence
          Length = 140142

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 34     gttcttttttaattatagcttg 55
              ||||||||||||||||||||||
Sbjct: 124490 gttcttttttaattatagcttg 124469
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>gb|AC148822.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0036K13
              map near R3342S, complete sequence
          Length = 135684

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 34     gttcttttttaattatagcttg 55
              ||||||||||||||||||||||
Sbjct: 133610 gttcttttttaattatagcttg 133631
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 34       gttcttttttaattatagcttg 55
                ||||||||||||||||||||||
Sbjct: 27597483 gttcttttttaattatagcttg 27597504
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 34       gttcttttttaattatagcttg 55
                ||||||||||||||||||||||
Sbjct: 27621471 gttcttttttaattatagcttg 27621492
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>gb|AC121767.3| Mus musculus BAC clone RP23-339E1 from chromosome 1, complete sequence
          Length = 184736

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 30    acctgttcttttttaattata 50
             |||||||||||||||||||||
Sbjct: 65161 acctgttcttttttaattata 65181
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>gb|AC118928.13| Mus musculus chromosome 16, clone RP23-416J10, complete sequence
          Length = 238516

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 117    cttcttcttctgtacacttat 137
              |||||||||||||||||||||
Sbjct: 188610 cttcttcttctgtacacttat 188630
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>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16
          Length = 348580

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 430    tcgatcacgtcgtcgtcgccg 450
              |||||||||||||||||||||
Sbjct: 223026 tcgatcacgtcgtcgtcgccg 223006
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>gb|AC154606.2| Mus musculus BAC clone RP23-252E10 from chromosome 16, complete sequence
          Length = 181697

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 117    cttcttcttctgtacacttat 137
              |||||||||||||||||||||
Sbjct: 168860 cttcttcttctgtacacttat 168840
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 427     gggtcgatcacgtcgtcgtcg 447
               |||||||||||||||||||||
Sbjct: 1343975 gggtcgatcacgtcgtcgtcg 1343995
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>emb|AL844889.5| Mouse DNA sequence from clone RP23-35D6 on chromosome 2, complete
             sequence
          Length = 112292

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 40    ttttaattatagcttggcaatttgc 64
             ||||||||||||||||| |||||||
Sbjct: 52595 ttttaattatagcttggtaatttgc 52571
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>emb|AL806522.4| Mouse DNA sequence from clone RP23-167H2 on chromosome 2, complete
             sequence
          Length = 189104

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 583   agagcacagcagaaaatatgt 603
             |||||||||||||||||||||
Sbjct: 42438 agagcacagcagaaaatatgt 42418
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>ref|XM_477429.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1107

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 487 aggcttccgcggcagaaagggcacgact 514
           |||||||| |||||||||||||| ||||
Sbjct: 754 aggcttcctcggcagaaagggcaagact 727
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>gb|AC156620.10| Mus musculus chromosome 5, clone RP23-80G18, complete sequence
          Length = 248320

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 382    atgaagctgtggaagtgcct 401
              ||||||||||||||||||||
Sbjct: 222590 atgaagctgtggaagtgcct 222609
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 373      aggctgtcgatgaagctgtggaag 396
                |||||||||||| |||||||||||
Sbjct: 12900182 aggctgtcgatgtagctgtggaag 12900159
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>gb|AC126670.4| Mus musculus BAC clone RP24-469G14 from chromosome 1, complete sequence
          Length = 200595

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 452    tgagcacccacaggtccctg 471
              ||||||||||||||||||||
Sbjct: 168559 tgagcacccacaggtccctg 168540
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>emb|CT010495.9| Mouse DNA sequence from clone RP23-226G14 on chromosome 17, complete
              sequence
          Length = 202526

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 111    caaacacttcttcttctgtacacttatt 138
              ||||||||| ||||| ||||||||||||
Sbjct: 191651 caaacacttattcttatgtacacttatt 191678
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>gb|AC122246.5| Mus musculus BAC clone RP23-152K13 from 1, complete sequence
          Length = 203739

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 452   tgagcacccacaggtccctg 471
             ||||||||||||||||||||
Sbjct: 34929 tgagcacccacaggtccctg 34910
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>gb|BC043890.1| Xenopus laevis chondromodulin-I precursor, mRNA (cDNA clone
           MGC:53801 IMAGE:5542016), complete cds
          Length = 1434

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 380 cgatgaagctgtggaagtgc 399
           ||||||||||||||||||||
Sbjct: 351 cgatgaagctgtggaagtgc 370
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>emb|CR956420.2| Pig DNA sequence from clone CH242-37G9 on chromosome 17, complete
            sequence
          Length = 65276

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 81   aacaagtaaaaaccttcacc 100
            ||||||||||||||||||||
Sbjct: 5094 aacaagtaaaaaccttcacc 5075
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 425     cggggtcgatcacgtcgtcg 444
               ||||||||||||||||||||
Sbjct: 3549017 cggggtcgatcacgtcgtcg 3548998
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>emb|AL445672.15| Human DNA sequence from clone RP11-66D1 on chromosome 9, complete
             sequence
          Length = 113031

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 399   cctcacgttctccttctcca 418
             ||||||||||||||||||||
Sbjct: 77755 cctcacgttctccttctcca 77736
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>emb|AL356503.18| Human DNA sequence from clone RP13-159A24 on chromosome Xq27.1-28,
             complete sequence
          Length = 147043

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   aaagccagagcaacaaataa 179
             ||||||||||||||||||||
Sbjct: 12145 aaagccagagcaacaaataa 12126
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 428     ggtcgatcacgtcgtcgtcg 447
               ||||||||||||||||||||
Sbjct: 2378644 ggtcgatcacgtcgtcgtcg 2378625
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>emb|AL033539.18|HS309H15 Human DNA sequence from clone RP1-309H15 on chromosome 6p22.1-22.3
            Contains a gene similar to hepatoma-derived growth factor
            (high-mobility group protein 1-like)(HDGF), part of a
            novel gene and a CpG Island, complete sequence
          Length = 143429

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 8    cagtattgactcattaccca 27
            ||||||||||||||||||||
Sbjct: 1074 cagtattgactcattaccca 1055
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>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16
          Length = 348624

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 369  gggcaggctgtcgatgaagc 388
            ||||||||||||||||||||
Sbjct: 3496 gggcaggctgtcgatgaagc 3515
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>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14
          Length = 348866

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 369    gggcaggctgtcgatgaagc 388
              ||||||||||||||||||||
Sbjct: 116713 gggcaggctgtcgatgaagc 116732
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>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12
          Length = 349672

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 369    gggcaggctgtcgatgaagc 388
              ||||||||||||||||||||
Sbjct: 111837 gggcaggctgtcgatgaagc 111856
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>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 435   cacgtcgtcgtcgccggtgagcac 458
             ||||||||||| ||||||||||||
Sbjct: 27385 cacgtcgtcgtggccggtgagcac 27362
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>gb|AC113029.23| Mus musculus chromosome 5, clone RP23-206J17, complete sequence
          Length = 223809

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 382    atgaagctgtggaagtgcct 401
              ||||||||||||||||||||
Sbjct: 178302 atgaagctgtggaagtgcct 178283
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>gb|AC118675.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0094H06, from chromosome 3, complete sequence
          Length = 118075

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 373   aggctgtcgatgaagctgtggaag 396
             |||||||||||| |||||||||||
Sbjct: 39327 aggctgtcgatgtagctgtggaag 39350
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete
              genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 437    cgtcgtcgtcgccggtgagc 456
              ||||||||||||||||||||
Sbjct: 446772 cgtcgtcgtcgccggtgagc 446791
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>gb|AC157653.2| Mus musculus BAC clone RP24-325H17 from chromosome 7, complete sequence
          Length = 168825

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 513    ctgagaccttgtgtacctgt 532
              ||||||||||||||||||||
Sbjct: 123004 ctgagaccttgtgtacctgt 123023
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 487      aggcttccgcggcagaaagggcacgact 514
                |||||||| |||||||||||||| ||||
Sbjct: 10309699 aggcttcctcggcagaaagggcaagact 10309672
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 373      aggctgtcgatgaagctgtggaag 396
                |||||||||||| |||||||||||
Sbjct: 12896945 aggctgtcgatgtagctgtggaag 12896922
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>dbj|AP002883.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0487H02
          Length = 145491

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 577   aaacagagagcacagcagaaaata 600
             ||||||||||||||||| ||||||
Sbjct: 51355 aaacagagagcacagcacaaaata 51378
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>ref|XM_577795.1| PREDICTED: Rattus norvegicus similar to LRRGT00049 (LOC502330), mRNA
          Length = 4653

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 208  cggccccggcttcgcttgcc 227
            ||||||||||||||||||||
Sbjct: 4559 cggccccggcttcgcttgcc 4540
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>dbj|AP005475.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0091L05
          Length = 173983

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 487   aggcttccgcggcagaaagggcacgact 514
             |||||||| |||||||||||||| ||||
Sbjct: 20879 aggcttcctcggcagaaagggcaagact 20852
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>dbj|AP005673.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1029H08
          Length = 137050

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 487    aggcttccgcggcagaaagggcacgact 514
              |||||||| |||||||||||||| ||||
Sbjct: 131618 aggcttcctcggcagaaagggcaagact 131591
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>gb|AC154423.2| Mus musculus BAC clone RP24-221B7 from 17, complete sequence
          Length = 172011

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 111   caaacacttcttcttctgtacacttatt 138
             ||||||||| ||||| ||||||||||||
Sbjct: 35208 caaacacttattcttatgtacacttatt 35181
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>emb|CT806423.2| Pan troglodytes chromosome X clone CH251-25B01 map Xq28, complete
              sequence
          Length = 220032

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    aaagccagagcaacaaataa 179
              ||||||||||||||||||||
Sbjct: 108625 aaagccagagcaacaaataa 108606
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>gb|AC107776.12| Mus musculus chromosome 17, clone RP23-92G2, complete sequence
          Length = 147077

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 111   caaacacttcttcttctgtacacttatt 138
             ||||||||| ||||| ||||||||||||
Sbjct: 97213 caaacacttattcttatgtacacttatt 97186
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>emb|CR956387.14| Pig DNA sequence from clone CH242-148I13 on chromosome 17, complete
            sequence
          Length = 66802

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 81   aacaagtaaaaaccttcacc 100
            ||||||||||||||||||||
Sbjct: 5094 aacaagtaaaaaccttcacc 5075
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>gb|AC149607.6| Mus musculus BAC clone RP23-455C13 from chromosome 7, complete sequence
          Length = 206284

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 513   ctgagaccttgtgtacctgt 532
             ||||||||||||||||||||
Sbjct: 19446 ctgagaccttgtgtacctgt 19465


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,253,155
Number of Sequences: 3902068
Number of extensions: 6253155
Number of successful extensions: 110717
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110016
Number of HSP's gapped (non-prelim): 701
length of query: 603
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 580
effective length of database: 17,143,297,704
effective search space: 9943112668320
effective search space used: 9943112668320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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