ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd22a14 |
|---|---|
| Clone Library Name | barley_pub |
>CCNL1_BRARE (Q7ZVX0) Cyclin-L1| Length = 498 Score = 37.4 bits (85), Expect = 0.039 Identities = 33/102 (32%), Positives = 39/102 (38%), Gaps = 3/102 (2%) Frame = -2 Query: 643 PSERNQ-RMGSP--QGRELRDRPQSRPEPSERNQRLXXXXXXXXXXXXXXXXXXXXXXXX 473 PS R + R SP Q R RDRP S + +R Sbjct: 399 PSPRQKARRPSPISQLRTDRDRPSETSRHSNKRRRSRSRSRSNSRERVRDRDHIKHKQER 458 Query: 472 SGSPRGRESRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKR 347 SGS + RDR + R SRDHGRN R S + H R R Sbjct: 459 SGSGHHWDHRDRERDR---SRDHGRNKRQSRSHSGHSHSRHR 497 Score = 34.7 bits (78), Expect = 0.25 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 3/44 (6%) Frame = -2 Query: 460 RGRESRDRSQSRP-ARSRDH--GRNDRGSSDYHEDHHDRKRMRA 338 R SR RS SR R RDH + +R S +H DH DR+R R+ Sbjct: 432 RRSRSRSRSNSRERVRDRDHIKHKQERSGSGHHWDHRDRERDRS 475
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 35.4 bits (80), Expect = 0.15 Identities = 27/105 (25%), Positives = 38/105 (36%), Gaps = 1/105 (0%) Frame = -2 Query: 649 PRPSERNQRMGSPQGRELRDRPQSRPEPSERNQRLXXXXXXXXXXXXXXXXXXXXXXXXS 470 PR S R GS R R +SR S R++ Sbjct: 183 PRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSR-------SRSISKSRSRSRSRSKGRSR 235 Query: 469 GSPRGRESRDRSQSRPARSR-DHGRNDRGSSDYHEDHHDRKRMRA 338 +GR+SR +S+S+P R H + S D +E R R R+ Sbjct: 236 SRSKGRKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSRS 280
>YP68_CAEEL (Q09217) Hypothetical protein B0495.8| Length = 313 Score = 35.4 bits (80), Expect = 0.15 Identities = 26/99 (26%), Positives = 40/99 (40%) Frame = -2 Query: 646 RPSERNQRMGSPQGRELRDRPQSRPEPSERNQRLXXXXXXXXXXXXXXXXXXXXXXXXSG 467 R ER +++GS +G + R+ R +R + Sbjct: 236 RRKEREEKLGSQRGYQRRESYGRRDRGGDRGE------------------------YRGD 271 Query: 466 SPRGRESRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRK 350 R R +RDRS+SR R + R+DRG Y D+ DR+ Sbjct: 272 RDRDRRNRDRSRSR---DRSYRRDDRGDRRYDRDNRDRR 307
>DDX46_PONPY (Q5R6D8) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) Length = 1032 Score = 34.7 bits (78), Expect = 0.25 Identities = 27/108 (25%), Positives = 39/108 (36%) Frame = -2 Query: 643 PSERNQRMGSPQGRELRDRPQSRPEPSERNQRLXXXXXXXXXXXXXXXXXXXXXXXXSGS 464 PS++ + G + RDR + R R++R S Sbjct: 27 PSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRSRSRDRKRLRRSRSRERDR-------S 79 Query: 463 PRGRESRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRASSTVDG 320 R SR R + R +RSR GR R SS ++ R R+ DG Sbjct: 80 RERRRSRSRDRRR-SRSRSRGRRSRSSSPGNKSKKTENRSRSKEKTDG 126
>DDX46_HUMAN (Q7L014) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) (PRP5 homolog) Length = 1032 Score = 34.7 bits (78), Expect = 0.25 Identities = 27/108 (25%), Positives = 39/108 (36%) Frame = -2 Query: 643 PSERNQRMGSPQGRELRDRPQSRPEPSERNQRLXXXXXXXXXXXXXXXXXXXXXXXXSGS 464 PS++ + G + RDR + R R++R S Sbjct: 27 PSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRSRSRDRKRLRRSRSRERDR-------S 79 Query: 463 PRGRESRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRASSTVDG 320 R SR R + R +RSR GR R SS ++ R R+ DG Sbjct: 80 RERRRSRSRDRRR-SRSRSRGRRSRSSSPGNKSKKTENRSRSKEKTDG 126
>LUC7L_MOUSE (Q9CYI4) Putative RNA-binding protein Luc7-like 1| Length = 371 Score = 34.3 bits (77), Expect = 0.33 Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 11/107 (10%) Frame = -2 Query: 637 ERNQRMGSPQGRELRDRPQSRP-EPSERNQRLXXXXXXXXXXXXXXXXXXXXXXXXSGSP 461 ER +R+G G RDR +SR + R R Sbjct: 251 EREERLGRRSGSRTRDRRRSRSRDRRRRRSRSTSRERRKFSRSRSRDRYRRHRSRSRSHS 310 Query: 460 RG--RESRDRS--------QSRPARSRDHGRNDRGSSDYHEDHHDRK 350 RG R SRDRS +S S ++GRN+RG +D+ ++ + K Sbjct: 311 RGHRRASRDRSTKYKFSRERSLREESWEYGRNERGPTDWRLENSNGK 357
>VE2_HPV12 (P36782) Regulatory protein E2| Length = 494 Score = 33.9 bits (76), Expect = 0.43 Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 2/108 (1%) Frame = -2 Query: 646 RPSERNQRMGSPQGRELRDRPQSRPEPSERNQRLXXXXXXXXXXXXXXXXXXXXXXXXSG 467 R S++ + P+ + RP SR E QR + Sbjct: 228 RSSDKQSQQADPRRKGYGRRPSSRTRRQETQQRRSRSRYRSQSNSRSRSQSQTRALGATS 287 Query: 466 SPRGRESRDRSQ--SRPARSRDHGRNDRGSSDYHEDHHDRKRMRASST 329 R S +Q +R +RS+ GR RGSS + R+R R+SS+ Sbjct: 288 VSRSSRSPSVTQIRNRRSRSQSRGRGGRGSST--DTTTKRRRSRSSSS 333
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 33.1 bits (74), Expect = 0.73 Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 2/104 (1%) Frame = -2 Query: 646 RPSERNQRMGSP-QGRELRDRPQSRPEPSERNQRLXXXXXXXXXXXXXXXXXXXXXXXXS 470 +P R + P + RE R++ + + + ER++ L Sbjct: 247 QPQGRTSQSEEPSRPREEREKSREKGKERERSRELSHEQPRERSRDRPREDKHHRDRDQG 306 Query: 469 GSPRGRESR-DRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMR 341 G R R+SR DR ++R RD DRG D HDR R R Sbjct: 307 GRDRDRDSRRDRDRTRDRGDRDRRDRDRGRDRTSRD-HDRDRSR 349
>PPIG_RAT (O55035) Peptidyl-prolyl cis-trans isomerase G (EC 5.2.1.8)| (Peptidyl-prolyl isomerase G) (PPIase G) (Rotamase G) (Cyclophilin G) (Matrin cyclophilin) (Matrin-cyp) Length = 752 Score = 32.7 bits (73), Expect = 0.96 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Frame = -2 Query: 460 RGRE-SRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRASS 332 R RE SR R +SR RSR H R+ S +YH R R S Sbjct: 560 RTRERSRSRDRSRRVRSRSHDRDRSRSKEYHRYREQEYRRRGRS 603
>PPIG_HUMAN (Q13427) Peptidyl-prolyl cis-trans isomerase G (EC 5.2.1.8)| (Peptidyl-prolyl isomerase G) (PPIase G) (Rotamase G) (Cyclophilin G) (Clk-associating RS-cyclophilin) (CARS-cyclophilin) (CARS-Cyp) (SR-cyclophilin) (SRcyp) (SR-cyp) (CASP10) Length = 754 Score = 32.3 bits (72), Expect = 1.3 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Frame = -2 Query: 460 RGRE-SRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRASS 332 R RE SR R +SR RSR H R+ S +YH R R S Sbjct: 561 RTRERSRSRDRSRRVRSRTHDRDRSRSKEYHRYREQEYRRRGRS 604
>MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-dependent RNA| helicase mog-5 (EC 3.6.1.-) (Sex determination protein mog-5) (Masculinization of germ line protein 5) Length = 1200 Score = 32.3 bits (72), Expect = 1.3 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = -2 Query: 460 RGRESR-DRSQSRPARSRDHGRNDRGSSDYHEDHHDRK 350 R RE R DR + R RD GR DR D D DR+ Sbjct: 183 RSREDRRDRDRRDRDRDRDRGRGDRRGDDRQRDRRDRR 220
>CCNL2_HUMAN (Q96S94) Cyclin-L2 (Paneth cell-enhanced expression protein)| Length = 520 Score = 32.3 bits (72), Expect = 1.3 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 9/55 (16%) Frame = -2 Query: 469 GSPRGRESRDRSQSR-------PARSRDHGR--NDRGSSDYHEDHHDRKRMRASS 332 G P+GRESR RS+SR P+RS R +D GS+ R R R+ S Sbjct: 373 GLPKGRESRSRSRSREQSYSRSPSRSASPKRRKSDSGSTSGGSKSQSRSRSRSDS 427
>DDX46_RAT (Q62780) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) (Helicase of 117.4 kDa) Length = 1032 Score = 32.0 bits (71), Expect = 1.6 Identities = 26/108 (24%), Positives = 38/108 (35%) Frame = -2 Query: 643 PSERNQRMGSPQGRELRDRPQSRPEPSERNQRLXXXXXXXXXXXXXXXXXXXXXXXXSGS 464 PS++ + G + RDR + R R++R S Sbjct: 27 PSDKRSKRGDDRRSRSRDRDRRRERSRSRDKR-------RSRSRDRKRLRRSRSRERDRS 79 Query: 463 PRGRESRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRASSTVDG 320 R SR R + R +RSR GR R SS + R R+ +G Sbjct: 80 RERRRSRSRDRRR-SRSRSRGRRSRSSSPGSKSKKAENRSRSKEKAEG 126
>DDX46_MOUSE (Q569Z5) Probable ATP-dependent RNA helicase DDX46 (EC 3.6.1.-)| (DEAD box protein 46) Length = 1032 Score = 32.0 bits (71), Expect = 1.6 Identities = 26/108 (24%), Positives = 38/108 (35%) Frame = -2 Query: 643 PSERNQRMGSPQGRELRDRPQSRPEPSERNQRLXXXXXXXXXXXXXXXXXXXXXXXXSGS 464 PS++ + G + RDR + R R++R S Sbjct: 27 PSDKRSKRGDDRRSRSRDRDRRRERSRSRDKR-------RSRSRDRKRLRRSRSRERDRS 79 Query: 463 PRGRESRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRASSTVDG 320 R SR R + R +RSR GR R SS + R R+ +G Sbjct: 80 RERRRSRSRDRRR-SRSRSRGRRSRSSSPGSKTKKTENRSRSKEKAEG 126
>CS029_MOUSE (Q9CS00) Protein C19orf29 homolog| Length = 772 Score = 32.0 bits (71), Expect = 1.6 Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 2/43 (4%) Frame = -2 Query: 469 GSPRGRE-SRDRSQSRP-ARSRDHGRNDRGSSDYHEDHHDRKR 347 G R R SR RS+SR +RSR HGR+ R + HE +RKR Sbjct: 32 GRSRSRSRSRSRSRSRSRSRSRSHGRSSRRRRE-HERRRERKR 73
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 31.6 bits (70), Expect = 2.1 Identities = 17/41 (41%), Positives = 22/41 (53%) Frame = -2 Query: 460 RGRESRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRA 338 R R+ DR + + +RSRD G DR S D DR R R+ Sbjct: 48 RDRDDEDRKKRKRSRSRDRGDRDRKRS-RSRDRRDRDRSRS 87
>EGGS_SCHMA (P08016) Putative eggshell protein (Fragment)| Length = 149 Score = 31.6 bits (70), Expect = 2.1 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = -2 Query: 412 RDHGRNDRGSSDYHEDHHDRK 350 +DH ++D D+H+DHHD + Sbjct: 107 KDHDKHDHDEHDHHDDHHDHR 127
>TOPRS_HUMAN (Q9NS56) Ubiquitin-protein E3 ligase Topors (EC 6.3.2.-)| (SUMO1-protein E3 ligase Topors) (Topoisomerase I-binding RING finger protein) (Topoisomerase I-binding arginine/serine-rich protein) (Tumor suppressor p53-binding protein 3) (p53-bindi Length = 1045 Score = 31.2 bits (69), Expect = 2.8 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = -2 Query: 466 SPRGRESRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRA 338 SP R R +SR + SR R+ + H HH +KRM++ Sbjct: 585 SPYNHRHRKRGRSRSSDSRSQSRSGHDQKN-HRKHHGKKRMKS 626
>GP113_HUMAN (Q8IZF5) Probable G-protein coupled receptor 113 precursor| (G-protein coupled receptor PGR23) Length = 1079 Score = 31.2 bits (69), Expect = 2.8 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +1 Query: 514 SPWTLCHEENPSAGCALMVQVSTGACPSTLCLEENPCA 627 S WTL P AG L++ V T AC +LC +++P A Sbjct: 567 SLWTLAQARKPWAGSTLLLAVETLAC--SLCPQDHPFA 602
>CYP1_BRUMA (Q27450) Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8) (PPIase| 1) (Cyclophilin) (BmCYP-1) Length = 843 Score = 30.8 bits (68), Expect = 3.6 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = -2 Query: 463 PRGRESRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRASS 332 P+ + +RS+SR RSR +GR R SS R + R+ S Sbjct: 692 PKEHKRNERSRSRRRRSRSNGRRRRSSSRRSRSRDRRHKSRSRS 735
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 30.8 bits (68), Expect = 3.6 Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 1/41 (2%) Frame = -2 Query: 466 SPRGRESRDRSQSR-PARSRDHGRNDRGSSDYHEDHHDRKR 347 SP S D QSR P RSRD R+ R S H R R Sbjct: 130 SPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHR 170
>HXA2_HUMAN (O43364) Homeobox protein Hox-A2| Length = 376 Score = 30.4 bits (67), Expect = 4.8 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +3 Query: 90 CKRNCPPLSETYIITG-KTSLISNAATSPPSLFRTLYPSMATGDHRPH 230 C + PP+++T+ + KTS +S++ PP +T+ PS+ G H H Sbjct: 21 CLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTI-PSLNPGSHPRH 67
>YOD2_CAEEL (P34594) Hypothetical protein ZC262.2| Length = 233 Score = 30.4 bits (67), Expect = 4.8 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 5/46 (10%) Frame = -2 Query: 463 PRGRESRDRSQSRPARSRDHGRND-----RGSSDYHEDHHDRKRMR 341 P ESR R RD+GRND RG + D +DR R Sbjct: 56 PEKNESRRHDDRDQERRRDYGRNDRRDDRRGDGSWKTDRNDRNDRR 101
>HXA2_MOUSE (P31245) Homeobox protein Hox-A2 (Hox-1.11) (Hox1.11)| Length = 372 Score = 30.4 bits (67), Expect = 4.8 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +3 Query: 90 CKRNCPPLSETYIITG-KTSLISNAATSPPSLFRTLYPSMATGDHRPH 230 C + PP+++T+ + KTS +S++ PP +T+ PS+ G H H Sbjct: 21 CLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTI-PSLNPGSHPRH 67
>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2365 Score = 30.4 bits (67), Expect = 4.8 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 6/97 (6%) Frame = +1 Query: 349 SSC--RGDPRGSHWNLCRYAHGPYSSPALT----GTCPSTLCHEENPSAGCALMA*I*TE 510 +SC R +PR S N P +S A + P+ +ENP CAL Sbjct: 626 TSCAQRDNPRASSPNRTTQQDSPRTSCARRDDPRASSPNRTIQQENPRTSCALRD-NPRA 684 Query: 511 TSPWTLCHEENPSAGCALMVQVSTGACPSTLCLEENP 621 +SP +ENP CA + P+ +ENP Sbjct: 685 SSPSRTIQQENPRTSCA-QRDDPRASSPNRTTQQENP 720
>U2AFM_HUMAN (Q15696) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa| subunit related-protein 2 (U2(RNU2) small nuclear RNA auxillary factor 1-like 2) (NY-REN-20 antigen) Length = 482 Score = 30.0 bits (66), Expect = 6.2 Identities = 24/89 (26%), Positives = 31/89 (34%), Gaps = 5/89 (5%) Frame = -2 Query: 640 SERNQRMGSPQGRELRDRPQSRPEPSERNQRLXXXXXXXXXXXXXXXXXXXXXXXXSGSP 461 SER +RMG R R + P P +R + Sbjct: 361 SERRERMGHHDDYYSRLRGRRNPSPDHSYKRNGESERKSSRHRGKKSHKRTSKSRERHNS 420 Query: 460 RGR-----ESRDRSQSRPARSRDHGRNDR 389 R R SRDRS+ R +RSR R+ R Sbjct: 421 RSRGRNRDRSRDRSRGRGSRSRSRSRSRR 449
>SFRS6_RABIT (O18776) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) (Fragment) Length = 81 Score = 30.0 bits (66), Expect = 6.2 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = -2 Query: 460 RGRESRDRSQSRPARSR-DHGRNDRGSSDYHEDHHDRKRMRASS 332 +GR+SR +S+S+P R R+ S D +E R R R+ S Sbjct: 37 KGRKSRSKSKSKPKSDRGSRSRSRSRSKDEYEKSRSRSRSRSRS 80
>DHX15_HUMAN (O43143) Putative pre-mRNA-splicing factor ATP-dependent RNA| helicase DHX15 (EC 3.6.1.-) (DEAH box protein 15) (ATP-dependent RNA helicase #46) Length = 795 Score = 30.0 bits (66), Expect = 6.2 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = -2 Query: 451 ESRDRSQSRPARSRDHGR-NDRGSSDYHEDHHDRKRMRASS 332 + RDR + R RS+D R DRG + + K +RAS+ Sbjct: 25 KDRDRDRDREDRSKDRDRERDRGDREREREKEKEKELRAST 65
>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 504 Score = 29.6 bits (65), Expect = 8.1 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -2 Query: 466 SPRGRESRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKR 347 SPR R+R +S P R RD R+D D + DR+R Sbjct: 437 SPRRDRDRERDRS-PRRDRDRERDDHDRRDRDRNGRDRER 475
>LC7L2_MOUSE (Q7TNC4) Putative RNA-binding protein Luc7-like 2 (CGI-74 homolog)| Length = 392 Score = 29.6 bits (65), Expect = 8.1 Identities = 23/105 (21%), Positives = 37/105 (35%) Frame = -2 Query: 646 RPSERNQRMGSPQGRELRDRPQSRPEPSERNQRLXXXXXXXXXXXXXXXXXXXXXXXXSG 467 R R++ + R+ R R +SR E+ R Sbjct: 274 REHRRHRSRSMSRERKRRTRSKSR----EKRHRHRSRSSSRSRSRSHQRSRHSSRDRSRE 329 Query: 466 SPRGRESRDRSQSRPARSRDHGRNDRGSSDYHEDHHDRKRMRASS 332 + R S++R + + SRD R+ R S D D+KR S+ Sbjct: 330 RSKRRSSKERFRDQDLASRDRDRSSRDRSPRDRDRKDKKRSYESA 374
>CWC22_YARLI (Q6C8C5) Pre-mRNA-splicing factor CWC22| Length = 954 Score = 29.6 bits (65), Expect = 8.1 Identities = 22/83 (26%), Positives = 28/83 (33%) Frame = -2 Query: 595 RDRPQSRPEPSERNQRLXXXXXXXXXXXXXXXXXXXXXXXXSGSPRGRESRDRSQSRPAR 416 R RP+SRP R++ L SP SR RS SR Sbjct: 821 RSRPRSRPRSRSRSRSLSRDRTGSPPRGRRRSRSYSR------SPSRSYSRSRSYSRSPS 874 Query: 415 SRDHGRNDRGSSDYHEDHHDRKR 347 R + +G S Y + R R Sbjct: 875 PRPKSKGAKGRSSYRAASYSRSR 897 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,596,809 Number of Sequences: 219361 Number of extensions: 1634165 Number of successful extensions: 4887 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 4542 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4858 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6143359464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
