ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21l12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1OPR2_ARATH (Q8GYB8) 12-oxophytodienoate reductase 2 (EC 1.3.1.42... 35 0.040
2OPR1_ARATH (Q8LAH7) 12-oxophytodienoate reductase 1 (EC 1.3.1.42... 35 0.040
3OPR1_LYCES (Q9XG54) 12-oxophytodienoate reductase 1 (EC 1.3.1.42... 35 0.069
4OPRL_LYCES (Q9FEX0) 12-oxophytodienoate reductase-like protein (... 34 0.090
5OPR3_LYCES (Q9FEW9) 12-oxophytodienoate reductase 3 (EC 1.3.1.42... 33 0.20
6FRMD6_MOUSE (Q8C0V9) FERM domain-containing protein 6 29 3.8
7FRMD6_HUMAN (Q96NE9) FERM domain-containing protein 6 29 3.8
8FRMD6_RAT (Q8VII0) FERM domain-containing protein 6 (FERM domain... 29 3.8
9OPR3_ARATH (Q9FUP0) 12-oxophytodienoate reductase 3 (EC 1.3.1.42... 29 3.8

>OPR2_ARATH (Q8GYB8) 12-oxophytodienoate reductase 2 (EC 1.3.1.42)|
           (12-oxophytodienoate-10,11-reductase 2) (OPDA-reductase
           2) (AtOPR2)
          Length = 374

 Score = 35.4 bits (80), Expect = 0.040
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = -3

Query: 221 IGAPLTKYIRXXFYLSDPXXGYXXXPVLPS 132
           + APL KY R  FY SDP  GY   P L S
Sbjct: 343 LDAPLNKYNRSTFYTSDPVVGYTDYPSLES 372



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>OPR1_ARATH (Q8LAH7) 12-oxophytodienoate reductase 1 (EC 1.3.1.42)|
           (12-oxophytodienoate-10,11-reductase 1) (OPDA-reductase
           1) (AtOPR1) (FS-AT-I)
          Length = 372

 Score = 35.4 bits (80), Expect = 0.040
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = -3

Query: 221 IGAPLTKYIRXXFYLSDPXXGYXXXPVLPS 132
           + APL KY R  FY SDP  GY   P L S
Sbjct: 341 VDAPLNKYDRPTFYTSDPVVGYTDYPFLES 370



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>OPR1_LYCES (Q9XG54) 12-oxophytodienoate reductase 1 (EC 1.3.1.42)|
           (12-oxophytodienoate-10,11-reductase 1) (OPDA-reductase
           1) (LeOPR1)
          Length = 376

 Score = 34.7 bits (78), Expect = 0.069
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = -3

Query: 221 IGAPLTKYIRXXFYLSDPXXGYXXXPVL 138
           + APL KY R  FY SDP  GY   P L
Sbjct: 345 LNAPLNKYNRDTFYTSDPIVGYTDYPFL 372



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>OPRL_LYCES (Q9FEX0) 12-oxophytodienoate reductase-like protein (EC 1.3.1.-)|
           (LeOPR2)
          Length = 355

 Score = 34.3 bits (77), Expect = 0.090
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 221 IGAPLTKYIRXXFYLSDPXXGYXXXPVL 138
           + APL KY R  FY +DP  GY   P L
Sbjct: 324 VNAPLNKYNRSTFYTNDPIIGYTDYPFL 351



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>OPR3_LYCES (Q9FEW9) 12-oxophytodienoate reductase 3 (EC 1.3.1.42)|
           (12-oxophytodienoate-10,11-reductase 3) (OPDA-reductase
           3) (LeOPR3)
          Length = 396

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -3

Query: 221 IGAPLTKYIRXXFYLSDPXXGYXXXPVL 138
           + APL KY R  FY  DP  GY   P L
Sbjct: 357 LNAPLNKYNRKTFYTQDPVVGYTDYPFL 384



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>FRMD6_MOUSE (Q8C0V9) FERM domain-containing protein 6|
          Length = 622

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 110 GMXPSHPXQIVHLMXQYYVKGIRSLXPMLMQSYVYW 3
           G+    P  I+H   QYYV+  + +   + + Y YW
Sbjct: 99  GIDQFGPPMIIHFRVQYYVENGKLISDRIARYYYYW 134



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>FRMD6_HUMAN (Q96NE9) FERM domain-containing protein 6|
          Length = 622

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 110 GMXPSHPXQIVHLMXQYYVKGIRSLXPMLMQSYVYW 3
           G+    P  I+H   QYYV+  R +     + Y YW
Sbjct: 99  GIDQFGPPMIIHFRVQYYVENGRLISDRAARYYYYW 134



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>FRMD6_RAT (Q8VII0) FERM domain-containing protein 6 (FERM domain-containing|
           protein 163SCII) (Fragment)
          Length = 327

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 110 GMXPSHPXQIVHLMXQYYVKGIRSLXPMLMQSYVYW 3
           G+    P  I+H   QYYV+  + +   + + Y YW
Sbjct: 91  GIDQFGPPMIIHFRVQYYVENGKLISDRIARYYYYW 126



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>OPR3_ARATH (Q9FUP0) 12-oxophytodienoate reductase 3 (EC 1.3.1.42)|
           (12-oxophytodienoate-10,11-reductase 3) (OPDA-reductase
           3) (Delayed dehiscence 1) (AtOPR3)
          Length = 391

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -3

Query: 221 IGAPLTKYIRXXFYLSDPXXGYXXXPVL 138
           I   L KY R  FY  DP  GY   P L
Sbjct: 358 IDGELNKYNRKTFYTQDPVVGYTDYPFL 385


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,029,603
Number of Sequences: 219361
Number of extensions: 317749
Number of successful extensions: 396
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 80,573,946
effective HSP length: 49
effective length of database: 69,825,257
effective search space used: 1675806168
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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