ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd21l12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK102440.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093L12, full insert sequence Length = 2146 Score = 60.0 bits (30), Expect = 3e-06 Identities = 90/114 (78%) Strand = Plus / Minus Query: 110 ctgaaaggctcatctagacatnggacggnagaactgggtnnncagngtatccaananctg 169 ||||||||| ||| ||||||| || || |||| ||||| ||| |||||||| | ||| Sbjct: 1367 ctgaaaggcacatttagacatctgatggaagaaatgggtagtcagtgtatccaataactg 1308 Query: 170 gatcggagaggtagaaagnnnntcttatgtacttggtgagaggagcacctattt 223 |||| |||| |||||||| ||| |||| ||| ||||||||||| |||||| Sbjct: 1307 gatcagagatgtagaaagtctctctgttgtatttgttgagaggagcatctattt 1254
>gb|AC174930.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBa0043H01, from chromosome 4, complete sequence Length = 15426 Score = 60.0 bits (30), Expect = 3e-06 Identities = 90/114 (78%) Strand = Plus / Plus Query: 110 ctgaaaggctcatctagacatnggacggnagaactgggtnnncagngtatccaananctg 169 ||||||||| ||| ||||||| || || |||| ||||| ||| |||||||| | ||| Sbjct: 4025 ctgaaaggcacatttagacatctgatggaagaaatgggtagtcagtgtatccaataactg 4084 Query: 170 gatcggagaggtagaaagnnnntcttatgtacttggtgagaggagcacctattt 223 |||| |||| |||||||| ||| |||| ||| ||||||||||| |||||| Sbjct: 4085 gatcagagatgtagaaagtctctctgttgtatttgttgagaggagcatctattt 4138
>dbj|AK061926.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-C04, full insert sequence Length = 515 Score = 54.0 bits (27), Expect = 2e-04 Identities = 84/107 (78%) Strand = Plus / Minus Query: 110 ctgaaaggctcatctagacatnggacggnagaactgggtnnncagngtatccaananctg 169 ||||||||| ||| ||||||| || || |||| ||||| ||| |||||||| | ||| Sbjct: 109 ctgaaaggcacatttagacatctgatggaagaaatgggtagtcagtgtatccaataactg 50 Query: 170 gatcggagaggtagaaagnnnntcttatgtacttggtgagaggagca 216 |||| |||| |||||||| ||| |||| ||| ||||||||||| Sbjct: 49 gatcagagatgtagaaagtctctctgttgtatttgttgagaggagca 3
>gb|AC121144.11| Mus musculus chromosome 3, clone RP24-202D19, complete sequence Length = 161989 Score = 42.1 bits (21), Expect = 0.72 Identities = 24/25 (96%) Strand = Plus / Plus Query: 106 attcctgaaaggctcatctagacat 130 ||||||| ||||||||||||||||| Sbjct: 27648 attcctggaaggctcatctagacat 27672
>emb|CT009527.5| Mouse DNA sequence from clone RP23-25D11 on chromosome 13, complete sequence Length = 226804 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 36 caatgaccttattcctttaacata 59 ||||||| |||||||||||||||| Sbjct: 124797 caatgacattattcctttaacata 124774
>gb|AC159252.3| Mus musculus BAC clone RP24-170P9 from chromosome 13, complete sequence Length = 168456 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 caatgaccttattcctttaacata 59 ||||||| |||||||||||||||| Sbjct: 143013 caatgacattattcctttaacata 143036
>ref|NG_001341.1| Mus musculus S-adenosylmethionine decarboxylase, pseudogene 1 (Amd-ps1) on chromosome X Length = 2187 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 cttatgtacttggtgagaggagca 216 ||||||||||||||||||| |||| Sbjct: 1299 cttatgtacttggtgagagtagca 1322
>emb|BX119986.8| Mouse DNA sequence from clone RP23-440J5 on chromosome X, complete sequence Length = 196937 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 cttatgtacttggtgagaggagca 216 ||||||||||||||||||| |||| Sbjct: 139000 cttatgtacttggtgagagtagca 139023
>dbj|AB003152.1| Mus musculus AMD3 pseudogene for S-adenosylmethionine decarboxylase Length = 2187 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 193 cttatgtacttggtgagaggagca 216 ||||||||||||||||||| |||| Sbjct: 1299 cttatgtacttggtgagagtagca 1322 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 970,740 Number of Sequences: 3902068 Number of extensions: 970740 Number of successful extensions: 57984 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 57974 Number of HSP's gapped (non-prelim): 11 length of query: 223 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 201 effective length of database: 17,147,199,772 effective search space: 3446587154172 effective search space used: 3446587154172 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
