Clone Name | rbasd21l08 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | VGLH_EHV1B (Q6DLH1) Glycoprotein H precursor | 28 | 8.2 | 2 | VGLH_EHV1 (P68330) Glycoprotein H precursor | 28 | 8.2 |
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>VGLH_EHV1B (Q6DLH1) Glycoprotein H precursor| Length = 848 Score = 27.7 bits (60), Expect = 8.2 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +3 Query: 15 VTVPADFIYRRMNLSFTKERLEPPGPFA 98 + VP D R +N ++ RLEPPGP A Sbjct: 268 IVVPNDVSARILNRRPSRLRLEPPGPHA 295
>VGLH_EHV1 (P68330) Glycoprotein H precursor| Length = 848 Score = 27.7 bits (60), Expect = 8.2 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +3 Query: 15 VTVPADFIYRRMNLSFTKERLEPPGPFA 98 + VP D R +N ++ RLEPPGP A Sbjct: 268 IVVPNDVSARILNRRPSRLRLEPPGPHA 295 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,333,379 Number of Sequences: 219361 Number of extensions: 358936 Number of successful extensions: 898 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 894 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 898 length of database: 80,573,946 effective HSP length: 57 effective length of database: 68,070,369 effective search space used: 1633688856 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)