ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd21l08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY077702.1| Triticum aestivum temperature stress-induced lipocalin (Tatil) mRNA, complete cds Length = 856 Score = 305 bits (154), Expect = 3e-80 Identities = 188/201 (93%) Strand = Plus / Minus Query: 1 cacacatgatggctgttacagtaccggccgacttcatatacagacggatgaacctatcat 60 ||||||| |||||||||||||| |||||| ||| |||||||||||||||||| ||||||| Sbjct: 743 cacacatcatggctgttacagtgccggccaactgcatatacagacggatgaatctatcat 684 Query: 61 ttaccaaagagcgactngaaccaccaggcccctttgctgtcggtgggcgcagcatcgccc 120 |||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| | Sbjct: 683 ttaccaaagagcgacttgaaccaccaggtccctttgctgtcggtgggcgcggcatcgctc 624 Query: 121 tncggcggcgggtcgctctgcggcgtcttgtgcagcttggccacgtngtagccttcctnc 180 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct: 623 tccggcggcgggtcgctctgcggcgtcttgtgcagcttggccacgtcgtagccttcctcc 564 Query: 181 ttggccttctncagcagctgg 201 |||||||||| |||||||||| Sbjct: 563 ttggccttctccagcagctgg 543 Score = 75.8 bits (38), Expect = 6e-11 Identities = 44/46 (95%) Strand = Plus / Minus Query: 200 gggctcaccgactagggcatactggtagtcgtcgtcgacatagagg 245 |||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct: 483 gggctcgccgacgagggcatactggtagtcgtcgtcgacatagagg 438
>gb|DQ222974.1| Hordeum vulgare temperature-induced lipocalin-1 (TIL-1) mRNA, complete cds Length = 573 Score = 258 bits (130), Expect = 7e-66 Identities = 140/145 (96%) Strand = Plus / Minus Query: 57 tcatttaccaaagagcgactngaaccaccaggcccctttgctgtcggtgggcgcagcatc 116 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 573 tcatttaccaaagagcgacttgaaccaccaggcccctttgctgtcggtgggcgcagcatc 514 Query: 117 gccctncggcggcgggtcgctctgcggcgtcttgtgcagcttggccacgtngtagccttc 176 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 513 gccctccggcggcgggtcgctctgcggcgtcttgtgcagcttggccacgtcgtagccttc 454 Query: 177 ctncttggccttctncagcagctgg 201 || ||||||||||| |||||||||| Sbjct: 453 ctccttggccttctccagcagctgg 429 Score = 83.8 bits (42), Expect = 2e-13 Identities = 45/46 (97%) Strand = Plus / Minus Query: 200 gggctcaccgactagggcatactggtagtcgtcgtcgacatagagg 245 |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 369 gggctcaccgacgagggcatactggtagtcgtcgtcgacatagagg 324
>ref|XM_466697.1| Oryza sativa (japonica cultivar-group), mRNA Length = 956 Score = 127 bits (64), Expect = 2e-26 Identities = 122/143 (85%) Strand = Plus / Minus Query: 56 atcatttaccaaagagcgactngaaccaccaggcccctttgctgtcggtgggcgcagcat 115 ||||||| || |||||||||| ||||||||| | ||| ||| ||||||||||||| || | Sbjct: 771 atcatttgccgaagagcgacttgaaccaccacgtccccttggtgtcggtgggcgcggcgt 712 Query: 116 cgccctncggcggcgggtcgctctgcggcgtcttgtgcagcttggccacgtngtagcctt 175 ||| || ||||||||||||| ||||||||||||| ||||||| | |||| ||| |||| Sbjct: 711 cgctctccggcggcgggtcgtcctgcggcgtcttgcgcagcttctcgacgtcgtaccctt 652 Query: 176 cctncttggccttctncagcagc 198 ||| ||||||||||| ||||||| Sbjct: 651 cctccttggccttctccagcagc 629 Score = 48.1 bits (24), Expect = 0.013 Identities = 39/44 (88%) Strand = Plus / Minus Query: 201 ggctcaccgactagggcatactggtagtcgtcgtcgacatagag 244 ||||| ||||| || || |||||||||||||||||||| ||||| Sbjct: 565 ggctcgccgacgagcgcgtactggtagtcgtcgtcgacgtagag 522
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 127 bits (64), Expect = 2e-26 Identities = 122/143 (85%) Strand = Plus / Plus Query: 56 atcatttaccaaagagcgactngaaccaccaggcccctttgctgtcggtgggcgcagcat 115 ||||||| || |||||||||| ||||||||| | ||| ||| ||||||||||||| || | Sbjct: 24171697 atcatttgccgaagagcgacttgaaccaccacgtccccttggtgtcggtgggcgcggcgt 24171756 Query: 116 cgccctncggcggcgggtcgctctgcggcgtcttgtgcagcttggccacgtngtagcctt 175 ||| || ||||||||||||| ||||||||||||| ||||||| | |||| ||| |||| Sbjct: 24171757 cgctctccggcggcgggtcgtcctgcggcgtcttgcgcagcttctcgacgtcgtaccctt 24171816 Query: 176 cctncttggccttctncagcagc 198 ||| ||||||||||| ||||||| Sbjct: 24171817 cctccttggccttctccagcagc 24171839 Score = 48.1 bits (24), Expect = 0.013 Identities = 39/44 (88%) Strand = Plus / Plus Query: 201 ggctcaccgactagggcatactggtagtcgtcgtcgacatagag 244 ||||| ||||| || || |||||||||||||||||||| ||||| Sbjct: 24171903 ggctcgccgacgagcgcgtactggtagtcgtcgtcgacgtagag 24171946
>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A05 Length = 174290 Score = 127 bits (64), Expect = 2e-26 Identities = 122/143 (85%) Strand = Plus / Plus Query: 56 atcatttaccaaagagcgactngaaccaccaggcccctttgctgtcggtgggcgcagcat 115 ||||||| || |||||||||| ||||||||| | ||| ||| ||||||||||||| || | Sbjct: 130438 atcatttgccgaagagcgacttgaaccaccacgtccccttggtgtcggtgggcgcggcgt 130497 Query: 116 cgccctncggcggcgggtcgctctgcggcgtcttgtgcagcttggccacgtngtagcctt 175 ||| || ||||||||||||| ||||||||||||| ||||||| | |||| ||| |||| Sbjct: 130498 cgctctccggcggcgggtcgtcctgcggcgtcttgcgcagcttctcgacgtcgtaccctt 130557 Query: 176 cctncttggccttctncagcagc 198 ||| ||||||||||| ||||||| Sbjct: 130558 cctccttggccttctccagcagc 130580 Score = 48.1 bits (24), Expect = 0.013 Identities = 39/44 (88%) Strand = Plus / Plus Query: 201 ggctcaccgactagggcatactggtagtcgtcgtcgacatagag 244 ||||| ||||| || || |||||||||||||||||||| ||||| Sbjct: 130644 ggctcgccgacgagcgcgtactggtagtcgtcgtcgacgtagag 130687
>dbj|AK071108.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078B21, full insert sequence Length = 956 Score = 127 bits (64), Expect = 2e-26 Identities = 122/143 (85%) Strand = Plus / Minus Query: 56 atcatttaccaaagagcgactngaaccaccaggcccctttgctgtcggtgggcgcagcat 115 ||||||| || |||||||||| ||||||||| | ||| ||| ||||||||||||| || | Sbjct: 771 atcatttgccgaagagcgacttgaaccaccacgtccccttggtgtcggtgggcgcggcgt 712 Query: 116 cgccctncggcggcgggtcgctctgcggcgtcttgtgcagcttggccacgtngtagcctt 175 ||| || ||||||||||||| ||||||||||||| ||||||| | |||| ||| |||| Sbjct: 711 cgctctccggcggcgggtcgtcctgcggcgtcttgcgcagcttctcgacgtcgtaccctt 652 Query: 176 cctncttggccttctncagcagc 198 ||| ||||||||||| ||||||| Sbjct: 651 cctccttggccttctccagcagc 629 Score = 48.1 bits (24), Expect = 0.013 Identities = 39/44 (88%) Strand = Plus / Minus Query: 201 ggctcaccgactagggcatactggtagtcgtcgtcgacatagag 244 ||||| ||||| || || |||||||||||||||||||| ||||| Sbjct: 565 ggctcgccgacgagcgcgtactggtagtcgtcgtcgacgtagag 522
>gb|AY107141.1| Zea mays PCO144549 mRNA sequence Length = 1065 Score = 123 bits (62), Expect = 3e-25 Identities = 112/130 (86%) Strand = Plus / Minus Query: 57 tcatttaccaaagagcgactngaaccaccaggcccctttgctgtcggtgggcgcagcatc 116 |||||| || |||||||||| ||||||||| |||| ||| ||||||||||||| || || Sbjct: 750 tcatttcccgaagagcgacttgaaccaccacacccccttggtgtcggtgggcgcggcgtc 691 Query: 117 gccctncggcggcgggtcgctctgcggcgtcttgtgcagcttggccacgtngtagccttc 176 || || ||||||||||||| |||||||||| ||||||||||| ||||| ||||||||| Sbjct: 690 gctctccggcggcgggtcgtcctgcggcgtcctgtgcagcttgctcacgtcgtagccttc 631 Query: 177 ctncttggcc 186 || ||||||| Sbjct: 630 ctccttggcc 621 Score = 40.1 bits (20), Expect = 3.2 Identities = 38/44 (86%) Strand = Plus / Minus Query: 201 ggctcaccgactagggcatactggtagtcgtcgtcgacatagag 244 ||||| ||||| || || ||||||||||| |||||||| ||||| Sbjct: 545 ggctcgccgacgagcgcgtactggtagtcatcgtcgacgtagag 502
>gb|DQ222989.1| Saccharum officinarum temperature-induced lipocalin (TIL) mRNA, complete cds Length = 582 Score = 123 bits (62), Expect = 3e-25 Identities = 112/130 (86%) Strand = Plus / Minus Query: 57 tcatttaccaaagagcgactngaaccaccaggcccctttgctgtcggtgggcgcagcatc 116 |||||| ||||||||||||| ||||||||| | || ||| ||||||||||||| || || Sbjct: 582 tcatttcccaaagagcgacttgaaccaccatactcccttggtgtcggtgggcgcggcgtc 523 Query: 117 gccctncggcggcgggtcgctctgcggcgtcttgtgcagcttggccacgtngtagccttc 176 || || ||||||||||||| |||||||||| ||||||||||| ||||| ||||||||| Sbjct: 522 gctctccggcggcgggtcgtcctgcggcgtcctgtgcagcttgctcacgtcgtagccttc 463 Query: 177 ctncttggcc 186 || ||||||| Sbjct: 462 ctccttggcc 453 Score = 48.1 bits (24), Expect = 0.013 Identities = 39/44 (88%) Strand = Plus / Minus Query: 201 ggctcaccgactagggcatactggtagtcgtcgtcgacatagag 244 ||||| ||||| || || |||||||||||||||||||| ||||| Sbjct: 377 ggctcgccgacgagcgcgtactggtagtcgtcgtcgacgtagag 334
>gb|DQ222975.1| Zea mays temperature-induced lipocalin-1 (TIL-1) mRNA, complete cds Length = 597 Score = 123 bits (62), Expect = 3e-25 Identities = 112/130 (86%) Strand = Plus / Minus Query: 57 tcatttaccaaagagcgactngaaccaccaggcccctttgctgtcggtgggcgcagcatc 116 |||||| || |||||||||| ||||||||| |||| ||| ||||||||||||| || || Sbjct: 597 tcatttcccgaagagcgacttgaaccaccacacccccttggtgtcggtgggcgcggcgtc 538 Query: 117 gccctncggcggcgggtcgctctgcggcgtcttgtgcagcttggccacgtngtagccttc 176 || || ||||||||||||| |||||||||| ||||||||||| ||||| ||||||||| Sbjct: 537 gctctccggcggcgggtcgtcctgcggcgtcctgtgcagcttgctcacgtcgtagccttc 478 Query: 177 ctncttggcc 186 || ||||||| Sbjct: 477 ctccttggcc 468 Score = 40.1 bits (20), Expect = 3.2 Identities = 38/44 (86%) Strand = Plus / Minus Query: 201 ggctcaccgactagggcatactggtagtcgtcgtcgacatagag 244 ||||| ||||| || || ||||||||||| |||||||| ||||| Sbjct: 392 ggctcgccgacgagcgcgtactggtagtcatcgtcgacgtagag 349
>gb|DQ222976.1| Sorghum bicolor temperature-induced lipocalin-1 (TIL-1) mRNA, complete cds Length = 606 Score = 107 bits (54), Expect = 2e-20 Identities = 107/126 (84%) Strand = Plus / Minus Query: 57 tcatttaccaaagagcgactngaaccaccaggcccctttgctgtcggtgggcgcagcatc 116 |||||| ||||||||||||| ||||||||| | || ||| |||| |||||||| || || Sbjct: 606 tcatttcccaaagagcgacttgaaccaccatactcccttggtgtcagtgggcgcggcgtc 547 Query: 117 gccctncggcggcgggtcgctctgcggcgtcttgtgcagcttggccacgtngtagccttc 176 || || ||||||||||||| |||||||||| ||||||||||| ||||| ||||||||| Sbjct: 546 gctctccggcggcgggtcgtcctgcggcgtcctgtgcagcttgctcacgtcgtagccttc 487 Query: 177 ctnctt 182 || ||| Sbjct: 486 ctcctt 481 Score = 48.1 bits (24), Expect = 0.013 Identities = 39/44 (88%) Strand = Plus / Minus Query: 201 ggctcaccgactagggcatactggtagtcgtcgtcgacatagag 244 ||||| ||||| || || |||||||||||||||||||| ||||| Sbjct: 401 ggctcgccgacgagcgcgtactggtagtcgtcgtcgacgtagag 358
>gb|DQ222977.1| Triticum aestivum temperature-induced lipocalin-2 (TIL-2) mRNA, complete cds Length = 549 Score = 40.1 bits (20), Expect = 3.2 Identities = 50/61 (81%) Strand = Plus / Minus Query: 139 tgcggcgtcttgtgcagcttggccacgtngtagccttcctncttggccttctncagcagc 198 ||||||||||| | |||||| ||||| ||| ||||||| ||||||| ||| || |||| Sbjct: 470 tgcggcgtcttccggagcttgctcacgtcgtacccttcctccttggccctctccaccagc 411 Query: 199 t 199 | Sbjct: 410 t 410 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,093,612 Number of Sequences: 3902068 Number of extensions: 1093612 Number of successful extensions: 16131 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 16103 Number of HSP's gapped (non-prelim): 28 length of query: 245 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 223 effective length of database: 17,147,199,772 effective search space: 3823825549156 effective search space used: 3823825549156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
