>DPO3_STRA5 (P63984) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)|
          Length = 1468

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 253 QLLEKAKEEGYDVAKLHKTPQSDPPPEGDAAPTDS 149
           QLLEKA +E     +  K+ +   PP  +  PT +
Sbjct: 181 QLLEKANQEAMQALEAQKSLEDSAPPSEEVTPTQN 215

>DPO3_STRA3 (P63983) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)|
          Length = 1468

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 253 QLLEKAKEEGYDVAKLHKTPQSDPPPEGDAAPTDS 149
           QLLEKA +E     +  K+ +   PP  +  PT +
Sbjct: 181 QLLEKANQEAMQALEAQKSLEDSAPPSEEVTPTQN 215

>RNH2_RALSO (Q8XZH7) Ribonuclease HII (EC 3.1.26.4) (RNase HII)|
          Length = 236

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 214 AKLHKTPQSDPPPEGDAAP-TDSKGAW 137
           A + +     PPP GDA P TD+K AW
Sbjct: 208 APVRRALDGAPPPAGDAVPQTDAKTAW 234

>CGRF1_MOUSE (Q8BMJ7) Cell growth regulator with RING finger domain 1 (Cell|
           growth regulatory gene 19 protein)
          Length = 332

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 253 QLLEKAKEEGYDVAKLHKTPQSDPPPEGDAAPTD 152
           Q L  A+ + YD+ +L  +  + PPP  D +P D
Sbjct: 213 QYLILAQGQFYDLKQLFMSANNSPPPSNDESPED 246

>VGLH_EHV1B (Q6DLH1) Glycoprotein H precursor|
          Length = 848

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 68  VTVPADFIYRRMNLSFTKERLEPPGPFA 151
           + VP D   R +N   ++ RLEPPGP A
Sbjct: 268 IVVPNDVSARILNRRPSRLRLEPPGPHA 295

>VGLH_EHV1 (P68330) Glycoprotein H precursor|
          Length = 848

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 68  VTVPADFIYRRMNLSFTKERLEPPGPFA 151
           + VP D   R +N   ++ RLEPPGP A
Sbjct: 268 IVVPNDVSARILNRRPSRLRLEPPGPHA 295

>ISPE_VIBCH (Q9KQ23) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC|
           2.7.1.148) (CMK)
           (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
           kinase)
          Length = 295

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 18  RLXNTLSIDTDKHTSWLLQYRPTSYT 95
           ++  +L  + DK  SWLLQY P+  T
Sbjct: 215 KIVRSLYPEVDKQLSWLLQYAPSRLT 240

>ABCBA_MOUSE (Q9JI39) ATP-binding cassette sub-family B member 10, mitochondrial|
           precursor (ATP-binding cassette transporter 10) (ABC
           transporter 10 protein) (ABC-mitochondrial erythroid
           protein) (ABC-me protein)
          Length = 715

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 144 GPGGSSRSLVNDRFIRLYMKSAGTVT 67
           GP GS +S V    +RLY  ++GTV+
Sbjct: 492 GPSGSGKSTVVSLLLRLYDPNSGTVS 517

>ABCBA_HUMAN (Q9NRK6) ATP-binding cassette sub-family B member 10, mitochondrial|
           precursor (ATP-binding cassette transporter 10) (ABC
           transporter 10 protein) (Mitochondrial ATP-binding
           cassette 2) (M-ABC2)
          Length = 738

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 144 GPGGSSRSLVNDRFIRLYMKSAGTVT 67
           GP GS +S V    +RLY  ++GT++
Sbjct: 527 GPSGSGKSTVLSLLLRLYNPASGTIS 552


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,859,363
Number of Sequences: 219361
Number of extensions: 527215
Number of successful extensions: 1926
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1926
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)