ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd21l05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191641.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 552 Score = 200 bits (101), Expect = 3e-48 Identities = 139/152 (91%) Strand = Plus / Minus Query: 327 ccttcttcttttatgaaataaggcccgggcttgataggataaggataaaggtagccctct 386 ||||||||||| || |||||||| || ||||| ||||||||||||||||||||||| || Sbjct: 545 ccttcttctttaataaaataaggaccaggcttaataggataaggataaaggtagccttcc 486 Query: 387 ggccgagaaaatccagcttcattcatgcggtcactgagcacatgtagtatangttttttc 446 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 485 ggccgagaaaacccagcttcattcatgcggtcactgagcacatgtagtataggttttttc 426 Query: 447 aatccatactcatgcctgtgtttctcaagata 478 | ||||||||||||||||| || |||||||| Sbjct: 425 agtccatactcatgcctgttcttttcaagata 394
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 200 bits (101), Expect = 3e-48 Identities = 139/152 (91%) Strand = Plus / Plus Query: 327 ccttcttcttttatgaaataaggcccgggcttgataggataaggataaaggtagccctct 386 ||||||||||| || |||||||| || ||||| ||||||||||||||||||||||| || Sbjct: 833243 ccttcttctttaataaaataaggaccaggcttaataggataaggataaaggtagccttcc 833302 Query: 387 ggccgagaaaatccagcttcattcatgcggtcactgagcacatgtagtatangttttttc 446 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 833303 ggccgagaaaacccagcttcattcatgcggtcactgagcacatgtagtataggttttttc 833362 Query: 447 aatccatactcatgcctgtgtttctcaagata 478 | ||||||||||||||||| || |||||||| Sbjct: 833363 agtccatactcatgcctgttcttttcaagata 833394
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 200 bits (101), Expect = 3e-48 Identities = 139/152 (91%) Strand = Plus / Plus Query: 327 ccttcttcttttatgaaataaggcccgggcttgataggataaggataaaggtagccctct 386 ||||||||||| || |||||||| || ||||| ||||||||||||||||||||||| || Sbjct: 29237405 ccttcttctttaataaaataaggaccaggcttaataggataaggataaaggtagccttcc 29237464 Query: 387 ggccgagaaaatccagcttcattcatgcggtcactgagcacatgtagtatangttttttc 446 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 29237465 ggccgagaaaacccagcttcattcatgcggtcactgagcacatgtagtataggttttttc 29237524 Query: 447 aatccatactcatgcctgtgtttctcaagata 478 | ||||||||||||||||| || |||||||| Sbjct: 29237525 agtccatactcatgcctgttcttttcaagata 29237556
>dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0692C11 Length = 169562 Score = 200 bits (101), Expect = 3e-48 Identities = 139/152 (91%) Strand = Plus / Plus Query: 327 ccttcttcttttatgaaataaggcccgggcttgataggataaggataaaggtagccctct 386 ||||||||||| || |||||||| || ||||| ||||||||||||||||||||||| || Sbjct: 16268 ccttcttctttaataaaataaggaccaggcttaataggataaggataaaggtagccttcc 16327 Query: 387 ggccgagaaaatccagcttcattcatgcggtcactgagcacatgtagtatangttttttc 446 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 16328 ggccgagaaaacccagcttcattcatgcggtcactgagcacatgtagtataggttttttc 16387 Query: 447 aatccatactcatgcctgtgtttctcaagata 478 | ||||||||||||||||| || |||||||| Sbjct: 16388 agtccatactcatgcctgttcttttcaagata 16419
>dbj|AP003023.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0684B02 Length = 132470 Score = 200 bits (101), Expect = 3e-48 Identities = 139/152 (91%) Strand = Plus / Plus Query: 327 ccttcttcttttatgaaataaggcccgggcttgataggataaggataaaggtagccctct 386 ||||||||||| || |||||||| || ||||| ||||||||||||||||||||||| || Sbjct: 83192 ccttcttctttaataaaataaggaccaggcttaataggataaggataaaggtagccttcc 83251 Query: 387 ggccgagaaaatccagcttcattcatgcggtcactgagcacatgtagtatangttttttc 446 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 83252 ggccgagaaaacccagcttcattcatgcggtcactgagcacatgtagtataggttttttc 83311 Query: 447 aatccatactcatgcctgtgtttctcaagata 478 | ||||||||||||||||| || |||||||| Sbjct: 83312 agtccatactcatgcctgttcttttcaagata 83343
>dbj|AK102719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105F22, full insert sequence Length = 1143 Score = 200 bits (101), Expect = 3e-48 Identities = 139/152 (91%) Strand = Plus / Minus Query: 327 ccttcttcttttatgaaataaggcccgggcttgataggataaggataaaggtagccctct 386 ||||||||||| || |||||||| || ||||| ||||||||||||||||||||||| || Sbjct: 566 ccttcttctttaataaaataaggaccaggcttaataggataaggataaaggtagccttcc 507 Query: 387 ggccgagaaaatccagcttcattcatgcggtcactgagcacatgtagtatangttttttc 446 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 506 ggccgagaaaacccagcttcattcatgcggtcactgagcacatgtagtataggttttttc 447 Query: 447 aatccatactcatgcctgtgtttctcaagata 478 | ||||||||||||||||| || |||||||| Sbjct: 446 agtccatactcatgcctgttcttttcaagata 415
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 200 bits (101), Expect = 3e-48 Identities = 139/152 (91%) Strand = Plus / Plus Query: 327 ccttcttcttttatgaaataaggcccgggcttgataggataaggataaaggtagccctct 386 ||||||||||| || |||||||| || ||||| ||||||||||||||||||||||| || Sbjct: 833243 ccttcttctttaataaaataaggaccaggcttaataggataaggataaaggtagccttcc 833302 Query: 387 ggccgagaaaatccagcttcattcatgcggtcactgagcacatgtagtatangttttttc 446 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 833303 ggccgagaaaacccagcttcattcatgcggtcactgagcacatgtagtataggttttttc 833362 Query: 447 aatccatactcatgcctgtgtttctcaagata 478 | ||||||||||||||||| || |||||||| Sbjct: 833363 agtccatactcatgcctgttcttttcaagata 833394
>emb|BX000500.4|CNS08CDQ Oryza sativa chromosome 12, . BAC OSJNBb0027B07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 79383 Score = 200 bits (101), Expect = 3e-48 Identities = 139/152 (91%) Strand = Plus / Minus Query: 327 ccttcttcttttatgaaataaggcccgggcttgataggataaggataaaggtagccctct 386 ||||||||||| || |||||||| || ||||| ||||||||||||||||||||||| || Sbjct: 34681 ccttcttctttaataaaataaggaccaggcttaataggataaggataaaggtagccttcc 34622 Query: 387 ggccgagaaaatccagcttcattcatgcggtcactgagcacatgtagtatangttttttc 446 ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 34621 ggccgagaaaacccagcttcattcatgcggtcactgagcacatgtagtataggttttttc 34562 Query: 447 aatccatactcatgcctgtgtttctcaagata 478 | ||||||||||||||||| || |||||||| Sbjct: 34561 agtccatactcatgcctgttcttttcaagata 34530
>dbj|AK103903.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150L19, full insert sequence Length = 2571 Score = 186 bits (94), Expect = 5e-44 Identities = 126/137 (91%) Strand = Plus / Minus Query: 342 aaataaggcccgggcttgataggataaggataaaggtagccctctggccgagaaaatcca 401 |||||||| || ||||| ||||||||||||||||||||||| || ||||||||||| ||| Sbjct: 2567 aaataaggaccaggcttaataggataaggataaaggtagccttccggccgagaaaaccca 2508 Query: 402 gcttcattcatgcggtcactgagcacatgtagtatangttttttcaatccatactcatgc 461 |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct: 2507 gcttcattcatgcggtcactgagcacatgtagtataggttttttcagtccatactcatgc 2448 Query: 462 ctgtgtttctcaagata 478 |||| || |||||||| Sbjct: 2447 ctgttcttttcaagata 2431
>gb|AC104380.3| Homo sapiens chromosome 8, clone CTD-2342C1, complete sequence Length = 159643 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 321 caattgccttcttcttttatg 341 ||||||||||||||||||||| Sbjct: 34142 caattgccttcttcttttatg 34122
>gb|AC017028.11| Homo sapiens BAC clone RP11-275G7 from 2, complete sequence Length = 201971 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 138 cttcagagctctggggacaaa 158 ||||||||||||||||||||| Sbjct: 115497 cttcagagctctggggacaaa 115517
>dbj|AP002979.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1057H12 Length = 153647 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 321 caattgccttcttcttttatg 341 ||||||||||||||||||||| Sbjct: 53659 caattgccttcttcttttatg 53679
>dbj|AP006658.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT27P02, TM0343, complete sequence Length = 92507 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 163 atcttaaatttgattttgtaa 183 ||||||||||||||||||||| Sbjct: 78478 atcttaaatttgattttgtaa 78458
>gb|DQ366724.1| Uncultured Prochlorococcus marinus clone HF10-11H7 genomic sequence Length = 34000 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 taaatttgattttgtaagtt 186 |||||||||||||||||||| Sbjct: 20327 taaatttgattttgtaagtt 20308
>gb|AC093521.3| Homo sapiens chromosome 5 clone RP11-152P24, complete sequence Length = 143970 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 tcttaaatttgattttgtaagttg 187 |||||||||| ||||||||||||| Sbjct: 77652 tcttaaatttaattttgtaagttg 77629
>gb|AC109474.2| Homo sapiens chromosome 5 clone RP11-414I19, complete sequence Length = 180650 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 214 actgcgtagtgtatacaagaaaaactag 241 ||||| |||||||||||| ||||||||| Sbjct: 21984 actgcttagtgtatacaaaaaaaactag 21957
>gb|AC010490.6| Homo sapiens chromosome 5 clone CTD-2333M24, complete sequence Length = 127188 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 214 actgcgtagtgtatacaagaaaaactag 241 ||||| |||||||||||| ||||||||| Sbjct: 118982 actgcttagtgtatacaaaaaaaactag 118955
>emb|CT030660.14| Mouse DNA sequence from clone RP23-455F4 on chromosome 13, complete sequence Length = 174127 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 ctttcaaactccccctcaac 215 |||||||||||||||||||| Sbjct: 91141 ctttcaaactccccctcaac 91160
>gb|AC154793.2| Mus musculus BAC clone RP23-88B6 from chromosome 13, complete sequence Length = 182356 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 ctttcaaactccccctcaac 215 |||||||||||||||||||| Sbjct: 143711 ctttcaaactccccctcaac 143692 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,956,299 Number of Sequences: 3902068 Number of extensions: 4956299 Number of successful extensions: 84142 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84046 Number of HSP's gapped (non-prelim): 96 length of query: 488 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 466 effective length of database: 17,147,199,772 effective search space: 7990595093752 effective search space used: 7990595093752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
