ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd21l04 |
|---|---|
| Clone Library Name | barley_pub |
>SNIP1_HUMAN (Q8TAD8) Smad nuclear-interacting protein 1| Length = 396 Score = 149 bits (377), Expect(2) = 4e-38 Identities = 69/102 (67%), Positives = 83/102 (81%) Frame = -2 Query: 571 LYVHRMSHYLFGRERRIADIPTDHPSCSKQHAVLQYRLVEKEQPDGMMSKQVRPYLMDLG 392 +Y+HR S YL GR RRIADIP DHPSCSKQHAV QYRLVE + DG + ++V+PY++DLG Sbjct: 273 MYIHRQSAYLLGRHRRIADIPIDHPSCSKQHAVFQYRLVEYTRADGTVGRRVKPYIIDLG 332 Query: 391 STNGTFINENRVESLRYYELFERDNIKFGNSSREYVLLHENS 266 S NGTF+N R+E RYYEL E+D +KFG SSREYVLLHE+S Sbjct: 333 SGNGTFLNNKRIEPQRYYELKEKDVLKFGFSSREYVLLHESS 374 Score = 28.5 bits (62), Expect(2) = 4e-38 Identities = 13/21 (61%), Positives = 13/21 (61%) Frame = -1 Query: 644 PEARKSDIRWRLYVFKGGEAL 582 PEAR RWRLY FK E L Sbjct: 250 PEARIPKKRWRLYPFKNDEVL 270
>SNIP1_MOUSE (Q8BIZ6) Smad nuclear-interacting protein 1| Length = 383 Score = 149 bits (377), Expect(2) = 4e-38 Identities = 69/102 (67%), Positives = 83/102 (81%) Frame = -2 Query: 571 LYVHRMSHYLFGRERRIADIPTDHPSCSKQHAVLQYRLVEKEQPDGMMSKQVRPYLMDLG 392 +Y+HR S YL GR RRIADIP DHPSCSKQHAV QYRLVE + DG + ++V+PY++DLG Sbjct: 260 MYIHRQSAYLLGRHRRIADIPIDHPSCSKQHAVFQYRLVEYTRADGTVGRRVKPYIIDLG 319 Query: 391 STNGTFINENRVESLRYYELFERDNIKFGNSSREYVLLHENS 266 S NGTF+N R+E RYYEL E+D +KFG SSREYVLLHE+S Sbjct: 320 SGNGTFLNNKRIEPQRYYELKEKDVLKFGFSSREYVLLHESS 361 Score = 28.5 bits (62), Expect(2) = 4e-38 Identities = 13/21 (61%), Positives = 13/21 (61%) Frame = -1 Query: 644 PEARKSDIRWRLYVFKGGEAL 582 PEAR RWRLY FK E L Sbjct: 237 PEARIPKKRWRLYPFKNDEVL 257
>PP1R8_MOUSE (Q8R3G1) Nuclear inhibitor of protein phosphatase 1 (NIPP-1)| (Protein phosphatase 1 regulatory inhibitor subunit 8) Length = 351 Score = 61.6 bits (148), Expect = 2e-09 Identities = 36/105 (34%), Positives = 51/105 (48%) Frame = -2 Query: 577 EPLYVHRMSHYLFGRERRIADIPTDHPSCSKQHAVLQYRLVEKEQPDGMMSKQVRPYLMD 398 E L + +YLFGR + D DH SCS+ HA L Y K R +L+D Sbjct: 39 EKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLK-----------RVFLID 87 Query: 397 LGSTNGTFINENRVESLRYYELFERDNIKFGNSSREYVLLHENST 263 L ST+GTF+ R+E + ++ + FG S+R Y L + T Sbjct: 88 LNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLREKPQT 132
>PP1R8_HUMAN (Q12972) Nuclear inhibitor of protein phosphatase 1 (NIPP-1)| (Protein phosphatase 1 regulatory inhibitor subunit 8) [Includes: Activator of RNA decay (EC 3.1.4.-) (ARD-1)] Length = 351 Score = 61.6 bits (148), Expect = 2e-09 Identities = 36/105 (34%), Positives = 51/105 (48%) Frame = -2 Query: 577 EPLYVHRMSHYLFGRERRIADIPTDHPSCSKQHAVLQYRLVEKEQPDGMMSKQVRPYLMD 398 E L + +YLFGR + D DH SCS+ HA L Y K R +L+D Sbjct: 39 EKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLK-----------RVFLID 87 Query: 397 LGSTNGTFINENRVESLRYYELFERDNIKFGNSSREYVLLHENST 263 L ST+GTF+ R+E + ++ + FG S+R Y L + T Sbjct: 88 LNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLREKPQT 132
>PP1R8_BOVIN (Q28147) Nuclear inhibitor of protein phosphatase 1 (NIPP-1)| (Protein phosphatase 1, regulatory inhibitor subunit 8) Length = 351 Score = 61.6 bits (148), Expect = 2e-09 Identities = 36/105 (34%), Positives = 51/105 (48%) Frame = -2 Query: 577 EPLYVHRMSHYLFGRERRIADIPTDHPSCSKQHAVLQYRLVEKEQPDGMMSKQVRPYLMD 398 E L + +YLFGR + D DH SCS+ HA L Y K R +L+D Sbjct: 39 EKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLK-----------RVFLID 87 Query: 397 LGSTNGTFINENRVESLRYYELFERDNIKFGNSSREYVLLHENST 263 L ST+GTF+ R+E + ++ + FG S+R Y L + T Sbjct: 88 LNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLREKPQT 132
>NADAP_HUMAN (Q9BWU0) Kanadaptin (Kidney anion exchanger adapter protein)| (Solute carrier family 4 anion exchanger member 1 adapter protein) (Lung cancer oncogene 3 protein) Length = 796 Score = 60.8 bits (146), Expect = 4e-09 Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Frame = -2 Query: 553 SHYLFGRERRIADIPTDHPSCSKQHAVLQYRLVEKEQPDGMM-SKQVRPYLMDLGSTNGT 377 S+ LFGR D+ +HPS S+ HAVLQ+R PDG S YL DLGST+GT Sbjct: 187 SYCLFGRLSG-CDVCLEHPSVSRYHAVLQHRA---SGPDGECDSNGPGFYLYDLGSTHGT 242 Query: 376 FINENRVESLRYYELFERDNIKFGNSSREYVL 281 F+N+ R+ Y + ++FG S+R ++L Sbjct: 243 FLNKTRIPPRTYCRVHVGHVVRFGGSTRLFIL 274
>PML1_YEAST (Q07930) Pre-mRNA leakage protein 1| Length = 204 Score = 42.4 bits (98), Expect = 0.001 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 10/79 (12%) Frame = -2 Query: 523 IADIPTDHPSCSKQHAVLQYRLVEKEQPDGMMSKQVRPYLMDLGSTNGTFINENRVESLR 344 +ADI + SKQH V+Q+R V G++ + Y+MDL S+NGT +N + R Sbjct: 126 VADIGIPEETSSKQHCVIQFRNVR-----GIL----KCYVMDLDSSNGTCLNNVVIPGAR 176 Query: 343 YYEL----------FERDN 317 Y EL FE DN Sbjct: 177 YIELRSGDVLTLSEFEEDN 195
>YOT2_CAEEL (P34648) Hypothetical protein ZK632.2| Length = 710 Score = 40.8 bits (94), Expect = 0.004 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Frame = -2 Query: 544 LFGRERRIADIPTDHPSCSKQHAVLQYRLVEKEQPDGMMSKQVRP-YLMDLGSTNGTFIN 368 + GR + D+ +HPS S+ H +LQY + MSK + ++ +LGST+G+ +N Sbjct: 109 VIGRIKPGCDLLMEHPSISRYHCILQY-------GNDKMSKTGKGWHIFELGSTHGSRMN 161 Query: 367 ENRVESLRYYELFERDNIKFGNSSR 293 + R+ +Y +FG S+R Sbjct: 162 KKRLPPKQYIRTRVGFIFQFGESTR 186
>RNF8_HUMAN (O76064) Ubiquitin ligase protein RNF8 (EC 6.3.2.-) (RING finger| protein 8) Length = 485 Score = 37.0 bits (84), Expect = 0.055 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 7/81 (8%) Frame = -2 Query: 490 SKQHAVLQYRLVEKEQPDGMMSKQVRPYLMDLGSTNGTFINENRVESLRYYELFERDNIK 311 S+ H VL K+ P+G + +MD S NG ++N R+E LR Y + + D I+ Sbjct: 60 SRNHCVL------KQNPEGQWT------IMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQ 107 Query: 310 FG-------NSSREYVLLHEN 269 G N+ EY + E+ Sbjct: 108 LGVPLENKENAEYEYEVTEED 128
>SBP_CAEEL (Q21950) Putative selenium-binding protein| Length = 576 Score = 32.3 bits (72), Expect = 1.3 Identities = 31/112 (27%), Positives = 43/112 (38%), Gaps = 31/112 (27%) Frame = -2 Query: 511 PTDHPSCSKQHAVLQYRLVEKEQPDGMMSKQVRPY----------LMDLGSTNGTFIN-- 368 P + P + +H + YRLVE+EQ D + + P+ L+DL T+ TF Sbjct: 65 PEERPPMAVEHQMYDYRLVEEEQDDELFAIVCCPHSIGYERDKIALVDLDPTSETFCTIL 124 Query: 367 -----------------ENRVESLRYYELFERDNI--KFGNSSREYVLLHEN 269 ESL F R NI NS + YV+ EN Sbjct: 125 SEVHLTSNGDEPGRMNWAKSAESLGEMNKFVRRNIIVPCMNSGKIYVIAFEN 176
>YKI5_CAEEL (P46012) Hypothetical protein C01G6.5| Length = 952 Score = 32.3 bits (72), Expect = 1.3 Identities = 22/71 (30%), Positives = 32/71 (45%) Frame = -2 Query: 508 TDHPSCSKQHAVLQYRLVEKEQPDGMMSKQVRPYLMDLGSTNGTFINENRVESLRYYELF 329 T+H Q + V DG V YL++ S NGT+IN+ R+ + L Sbjct: 55 TEHVELEPQFISRCHARVHHTNQDG-----VEEYLVEDISENGTYINDRRLSKDKREILK 109 Query: 328 ERDNIKFGNSS 296 D IKFG+ + Sbjct: 110 SGDTIKFGHKN 120
>ASB11_PONPY (Q5RFS1) Ankyrin repeat and SOCS box protein 11 (ASB-11)| Length = 323 Score = 31.6 bits (70), Expect = 2.3 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +1 Query: 130 IHLARNHDRHNKNNNSSSVHQLSLAAQKQSSDDALHICLPPP 255 IHL ++ + K N+ L LAA K S + AL +C PP Sbjct: 244 IHLLTDYGANLKRRNAQGKSALDLAAPKSSVEQALLLCEGPP 285
>MYSH_ACACA (P47808) High molecular weight form of myosin-1 (High molecular| weight form of myosin I) (HMWMI) Length = 1577 Score = 30.8 bits (68), Expect = 3.9 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 4/122 (3%) Frame = -2 Query: 628 QILDGDSMYSRVVKH*NEPLYVHRMSHYLFGRERRI---ADIPTDHPSCSKQHAVLQYRL 458 +I D +S + NE L H + Y F E ++ ++ +H + VL L Sbjct: 454 EIFDKNSFEQLCINFTNEKLQQH-FNQYTFKLEEKLYQSEEVKYEHITFIDNQPVLD--L 510 Query: 457 VEKEQPDGMMSKQVRPYLMDLGSTNGTFINENRVESLRYYELFERDNIKFGNSSR-EYVL 281 +EK+QP G+M + S FI N+ ++ R +L + G SR ++++ Sbjct: 511 IEKKQPQGLMLVLDEQISIPKSSDATFFIKANQTQAARSTQL------RGGEDSRTDFII 564 Query: 280 LH 275 H Sbjct: 565 KH 566
>DPOL_HBVW2 (P03159) P protein [Includes: DNA-directed DNA polymerase (EC| 2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 845 Score = 30.4 bits (67), Expect = 5.1 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 15/74 (20%) Frame = +1 Query: 106 KLHSVTKRIH----LARNHDRHNKNNNSSSVHQ----------LSLAAQKQSSDDALHI- 240 K H T+R H H+ NN+SS +HQ LS + ++ SS A+ Sbjct: 248 KAHPSTRRYFGVEPSGSGHIDHSVNNSSSCLHQSAVRKAAYSHLSTSKRQSSSGHAVEFH 307 Query: 241 CLPPPFSLSSSHGA 282 CLPP + S S G+ Sbjct: 308 CLPPNSAGSQSQGS 321
>RNF8_MOUSE (Q8VC56) Ubiquitin ligase protein RNF8 (EC 6.3.2.-) (RING finger| protein 8) (AIP37) (ActA-interacting protein 37) (LaXp180) Length = 488 Score = 30.4 bits (67), Expect = 5.1 Identities = 19/62 (30%), Positives = 32/62 (51%) Frame = -2 Query: 490 SKQHAVLQYRLVEKEQPDGMMSKQVRPYLMDLGSTNGTFINENRVESLRYYELFERDNIK 311 S+ H VL K+ P+G + +MD S NG ++N R+ L+ Y + + D+I+ Sbjct: 60 SRSHCVL------KQNPEGQWT------IMDNKSLNGVWLNRERLAPLQGYCIRKGDHIQ 107 Query: 310 FG 305 G Sbjct: 108 LG 109
>SYW_ENTFA (Q830U2) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)| (Tryptophan--tRNA ligase) (TrpRS) Length = 336 Score = 30.4 bits (67), Expect = 5.1 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = +2 Query: 533 PSKKVVAHAMNIQRFISVLHHP*IHRVSI*YLICEPLGGSEYNK 664 P+KK+ N++ FIS+L P + R I + + G EYNK Sbjct: 195 PTKKMSKSDTNVKGFISMLDEPAVIRKKIRSAVTDSTGVIEYNK 238
>PI3K2_DICDI (P54674) Phosphatidylinositol 3-kinase 2 (EC 2.7.1.137)| (PI3-kinase) (PtdIns-3-kinase) (PI3K) Length = 1858 Score = 30.4 bits (67), Expect = 5.1 Identities = 16/44 (36%), Positives = 26/44 (59%) Frame = -3 Query: 399 ILVVPTGLSSMRIVLSPSATTNSSKGTTLSLAIVAGSTCCSMRT 268 I VP +SS ++++ PS+ +SS TLSL+ + S+ S T Sbjct: 340 ISAVPKKVSSSKLLIPPSSNVSSSSNITLSLSSSSPSSSSSSST 383
>Y4449_ARATH (O23305) FHA domain-containing protein At4g14490| Length = 386 Score = 30.4 bits (67), Expect = 5.1 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -2 Query: 406 LMDLGSTNGTFINENRVESLRYYELFERDNIKFG 305 + DLGS+NGT +N N ++ L + D IK G Sbjct: 62 IQDLGSSNGTLLNSNALDPETSVNLGDGDVIKLG 95
>DUN1_YEAST (P39009) DNA damage response protein kinase DUN1 (EC 2.7.11.1)| Length = 513 Score = 29.6 bits (65), Expect = 8.7 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = -2 Query: 391 STNGTFINENRVESLRYYELFERDNIKFGNS-SREYVLLHENSTD*TEEGGRCGARRRSF 215 S NGTFIN NR+ + Y L D I FG S S + +STD + + + RS+ Sbjct: 101 SRNGTFINGNRLVK-KDYILKNGDRIVFGKSCSFLFKYASSSSTDIENDDEKVSSESRSY 159
>MTLD_ENTFA (P27543) Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)| Length = 384 Score = 29.6 bits (65), Expect = 8.7 Identities = 18/78 (23%), Positives = 36/78 (46%) Frame = -2 Query: 568 YVHRMSHYLFGRERRIADIPTDHPSCSKQHAVLQYRLVEKEQPDGMMSKQVRPYLMDLGS 389 YV + Y+ ER++ + T H + + A+L Y+ +++ D ++ Q++ L + G Sbjct: 199 YVADLEPYI---ERKLFSVNTGHATVAYTGALLGYQTIDEAMQDALVVAQLKSVLQETGK 255 Query: 388 TNGTFINENRVESLRYYE 335 N + E Y E Sbjct: 256 LLVAKWNFDEQEHAAYIE 273
>PEPT_OCEIH (Q8CXN0) Peptidase T (EC 3.4.11.4) (Tripeptide aminopeptidase)| (Aminotripeptidase) (Tripeptidase) Length = 409 Score = 29.6 bits (65), Expect = 8.7 Identities = 11/40 (27%), Positives = 23/40 (57%) Frame = +1 Query: 121 TKRIHLARNHDRHNKNNNSSSVHQLSLAAQKQSSDDALHI 240 TK ++ R+HDR+ N ++ Q + Q + ++A+H+ Sbjct: 275 TKVYYIIRDHDRNKFENRKDTLRQFATDIQHKYGENAIHV 314
>NBN_RAT (Q9JIL9) Nibrin (Nijmegen breakage syndrome protein 1 homolog)| Length = 750 Score = 29.6 bits (65), Expect = 8.7 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 2/93 (2%) Frame = -2 Query: 577 EPLYVHRMSHYLFGRERRIADIPTDHPSCSKQHAVLQ--YRLVEKEQPDGMMSKQVRPYL 404 EP + Y+ GR+ I D S S+ HAVL+ + + Q D + + ++ Sbjct: 14 EPCRLLAGVEYIVGRKNCAILIENDQ-SISRNHAVLRVNFPVTSLSQTDEIPTLTIKD-- 70 Query: 403 MDLGSTNGTFINENRVESLRYYELFERDNIKFG 305 S GTFINE ++++ L D + FG Sbjct: 71 ---NSKYGTFINEEKMQNGLSSTLKTGDRVTFG 100 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,972,970 Number of Sequences: 219361 Number of extensions: 2119596 Number of successful extensions: 5429 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 5154 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5406 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6598423128 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
