Clone Name | rbasd22a02 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK099747.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091N20, full insert sequence Length = 1227 Score = 333 bits (168), Expect = 4e-88 Identities = 313/364 (85%) Strand = Plus / Minus Query: 231 ctcacttcttgagcacattgtaaaggtaggcagcgataccaagtatgacacagagcagga 290 ||||||| || || ||||||||||| || || || |||||||| || ||||||||||||| Sbjct: 928 ctcacttttttagaacattgtaaagataagccgcaataccaagaataacacagagcagga 869 Query: 291 caatgtcgatgcagaagttgcgactggatctcatctgaagaatagtctgtttcagtctca 350 | || || ||||||||||||||||| ||||||| |||||||| |||| ||| ||||| | Sbjct: 868 cgatatcaatgcagaagttgcgactagatctcagctgaagaacggtctcttttagtctga 809 Query: 351 cgttggtgttcttcagatctgcattggctcgatccaccttgtcatccatttcatccatca 410 ||||||| ||||||| ||||| ||||||| ||||||||| || |||||||||||||||| Sbjct: 808 cgttggtattcttcaaatctgtgttggctctatccaccttctcgtccatttcatccatca 749 Query: 411 agggaacttgcctatccaattcctcgttcatatccgatgccatgttcttcagagttgcca 470 |||||||||||||||||| |||||| |||||||| ||||||||||| ||||||||| ||| Sbjct: 748 agggaacttgcctatccagttcctcattcatatcagatgccatgtttttcagagtttcca 689 Query: 471 gcccttcaccaataacatccaaaccttcatcctgcttcattctacgcatntnatattcct 530 |||||||||| |||| |||||||||||||||||| |||||| | ||||| | ||||||| Sbjct: 688 gcccttcaccgataatatccaaaccttcatcctgtttcattttgcgcatctcatattccc 629 Query: 531 gacgaaacttgnttgattcttcagtccccttaaagtactcgnnatnaaagtttncatcan 590 ||||||||| |||||||||| || |||||||||||||| || |||||| ||||| Sbjct: 628 gacgaaactgatttgattcttctgttcccttaaagtactcatcatcaaagttgccatcag 569 Query: 591 aagt 594 |||| Sbjct: 568 aagt 565
>dbj|AK101606.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051M14, full insert sequence Length = 1236 Score = 333 bits (168), Expect = 4e-88 Identities = 313/364 (85%) Strand = Plus / Minus Query: 231 ctcacttcttgagcacattgtaaaggtaggcagcgataccaagtatgacacagagcagga 290 ||||||| || || ||||||||||| || || || |||||||| || ||||||||||||| Sbjct: 937 ctcacttttttagaacattgtaaagataagccgcaataccaagaataacacagagcagga 878 Query: 291 caatgtcgatgcagaagttgcgactggatctcatctgaagaatagtctgtttcagtctca 350 | || || ||||||||||||||||| ||||||| |||||||| |||| ||| ||||| | Sbjct: 877 cgatatcaatgcagaagttgcgactagatctcagctgaagaacggtctcttttagtctga 818 Query: 351 cgttggtgttcttcagatctgcattggctcgatccaccttgtcatccatttcatccatca 410 ||||||| ||||||| ||||| ||||||| ||||||||| || |||||||||||||||| Sbjct: 817 cgttggtattcttcaaatctgtgttggctctatccaccttctcgtccatttcatccatca 758 Query: 411 agggaacttgcctatccaattcctcgttcatatccgatgccatgttcttcagagttgcca 470 |||||||||||||||||| |||||| |||||||| ||||||||||| ||||||||| ||| Sbjct: 757 agggaacttgcctatccagttcctcattcatatcagatgccatgtttttcagagtttcca 698 Query: 471 gcccttcaccaataacatccaaaccttcatcctgcttcattctacgcatntnatattcct 530 |||||||||| |||| |||||||||||||||||| |||||| | ||||| | ||||||| Sbjct: 697 gcccttcaccgataatatccaaaccttcatcctgtttcattttgcgcatctcatattccc 638 Query: 531 gacgaaacttgnttgattcttcagtccccttaaagtactcgnnatnaaagtttncatcan 590 ||||||||| |||||||||| || |||||||||||||| || |||||| ||||| Sbjct: 637 gacgaaactgatttgattcttctgttcccttaaagtactcatcatcaaagttgccatcag 578 Query: 591 aagt 594 |||| Sbjct: 577 aagt 574
>ref|XM_475871.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 951 Score = 329 bits (166), Expect = 6e-87 Identities = 302/350 (86%) Strand = Plus / Minus Query: 245 acattgtaaaggtaggcagcgataccaagtatgacacagagcaggacaatgtcgatgcag 304 ||||||||||| || || || |||||||| || |||||||||||||| || || |||||| Sbjct: 794 acattgtaaagataagccgcaataccaagaataacacagagcaggacgatatcaatgcag 735 Query: 305 aagttgcgactggatctcatctgaagaatagtctgtttcagtctcacgttggtgttcttc 364 ||||||||||| ||||||| |||||||| |||| ||| ||||| |||||||| |||||| Sbjct: 734 aagttgcgactagatctcagctgaagaacggtctcttttagtctgacgttggtattcttc 675 Query: 365 agatctgcattggctcgatccaccttgtcatccatttcatccatcaagggaacttgccta 424 | ||||| ||||||| ||||||||| || |||||||||||||||||||||||||||||| Sbjct: 674 aaatctgtgttggctctatccaccttctcgtccatttcatccatcaagggaacttgccta 615 Query: 425 tccaattcctcgttcatatccgatgccatgttcttcagagttgccagcccttcaccaata 484 |||| |||||| |||||||| ||||||||||| ||||||||| ||||||||||||| ||| Sbjct: 614 tccagttcctcattcatatcagatgccatgtttttcagagtttccagcccttcaccgata 555 Query: 485 acatccaaaccttcatcctgcttcattctacgcatntnatattcctgacgaaacttgntt 544 | |||||||||||||||||| |||||| | ||||| | ||||||| ||||||||| || Sbjct: 554 atatccaaaccttcatcctgtttcattttgcgcatctcatattcccgacgaaactgattt 495 Query: 545 gattcttcagtccccttaaagtactcgnnatnaaagtttncatcanaagt 594 |||||||| || |||||||||||||| || |||||| ||||| |||| Sbjct: 494 gattcttctgttcccttaaagtactcatcatcaaagttgccatcagaagt 445
>dbj|AK103396.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033127N02, full insert sequence Length = 1252 Score = 329 bits (166), Expect = 6e-87 Identities = 302/350 (86%) Strand = Plus / Minus Query: 245 acattgtaaaggtaggcagcgataccaagtatgacacagagcaggacaatgtcgatgcag 304 ||||||||||| || || || |||||||| || |||||||||||||| || || |||||| Sbjct: 938 acattgtaaagataagccgcaataccaagaataacacagagcaggacgatatcaatgcag 879 Query: 305 aagttgcgactggatctcatctgaagaatagtctgtttcagtctcacgttggtgttcttc 364 ||||||||||| ||||||| |||||||| |||| ||| ||||| |||||||| |||||| Sbjct: 878 aagttgcgactagatctcagctgaagaacggtctcttttagtctgacgttggtattcttc 819 Query: 365 agatctgcattggctcgatccaccttgtcatccatttcatccatcaagggaacttgccta 424 | ||||| ||||||| ||||||||| || |||||||||||||||||||||||||||||| Sbjct: 818 aaatctgtgttggctctatccaccttctcgtccatttcatccatcaagggaacttgccta 759 Query: 425 tccaattcctcgttcatatccgatgccatgttcttcagagttgccagcccttcaccaata 484 |||| |||||| |||||||| ||||||||||| ||||||||| ||||||||||||| ||| Sbjct: 758 tccagttcctcattcatatcagatgccatgtttttcagagtttccagcccttcaccgata 699 Query: 485 acatccaaaccttcatcctgcttcattctacgcatntnatattcctgacgaaacttgntt 544 | |||||||||||||||||| |||||| | ||||| | ||||||| ||||||||| || Sbjct: 698 atatccaaaccttcatcctgtttcattttgcgcatctcatattcccgacgaaactgattt 639 Query: 545 gattcttcagtccccttaaagtactcgnnatnaaagtttncatcanaagt 594 |||||||| || |||||||||||||| || |||||| ||||| |||| Sbjct: 638 gattcttctgttcccttaaagtactcatcatcaaagttgccatcagaagt 589
>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23, complete sequence Length = 191765 Score = 99.6 bits (50), Expect = 1e-17 Identities = 68/74 (91%) Strand = Plus / Minus Query: 432 cctcgttcatatccgatgccatgttcttcagagttgccagcccttcaccaataacatcca 491 |||| |||||||| ||||||||||| ||||||||| ||||||||||||| |||| ||||| Sbjct: 187422 cctcattcatatcagatgccatgtttttcagagtttccagcccttcaccgataatatcca 187363 Query: 492 aaccttcatcctgc 505 |||||||||||||| Sbjct: 187362 aaccttcatcctgc 187349 Score = 73.8 bits (37), Expect = 6e-10 Identities = 70/81 (86%) Strand = Plus / Minus Query: 248 ttgtaaaggtaggcagcgataccaagtatgacacagagcaggacaatgtcgatgcagaag 307 |||||||| || || || |||||||| || |||||||||||||| || || ||||||||| Sbjct: 187892 ttgtaaagataagccgcaataccaagaataacacagagcaggacgatatcaatgcagaag 187833 Query: 308 ttgcgactggatctcatctga 328 |||||||| ||||||| |||| Sbjct: 187832 ttgcgactagatctcagctga 187812 Score = 73.8 bits (37), Expect = 6e-10 Identities = 46/49 (93%) Strand = Plus / Minus Query: 386 accttgtcatccatttcatccatcaagggaacttgcctatccaattcct 434 ||||| || |||||||||||||||||||||||||||||||||| ||||| Sbjct: 187563 accttctcgtccatttcatccatcaagggaacttgcctatccagttcct 187515 Score = 58.0 bits (29), Expect = 4e-05 Identities = 59/70 (84%) Strand = Plus / Minus Query: 501 cctgcttcattctacgcatntnatattcctgacgaaacttgnttgattcttcagtcccct 560 |||| |||||| | ||||| | ||||||| ||||||||| |||||||||| || |||| Sbjct: 187243 cctgtttcattttgcgcatctcatattcccgacgaaactgatttgattcttctgttccct 187184 Query: 561 taaagtactc 570 |||||||||| Sbjct: 187183 taaagtactc 187174
>gb|AC093956.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1263_E10, complete sequence Length = 116469 Score = 99.6 bits (50), Expect = 1e-17 Identities = 68/74 (91%) Strand = Plus / Minus Query: 432 cctcgttcatatccgatgccatgttcttcagagttgccagcccttcaccaataacatcca 491 |||| |||||||| ||||||||||| ||||||||| ||||||||||||| |||| ||||| Sbjct: 24911 cctcattcatatcagatgccatgtttttcagagtttccagcccttcaccgataatatcca 24852 Query: 492 aaccttcatcctgc 505 |||||||||||||| Sbjct: 24851 aaccttcatcctgc 24838 Score = 73.8 bits (37), Expect = 6e-10 Identities = 70/81 (86%) Strand = Plus / Minus Query: 248 ttgtaaaggtaggcagcgataccaagtatgacacagagcaggacaatgtcgatgcagaag 307 |||||||| || || || |||||||| || |||||||||||||| || || ||||||||| Sbjct: 25381 ttgtaaagataagccgcaataccaagaataacacagagcaggacgatatcaatgcagaag 25322 Query: 308 ttgcgactggatctcatctga 328 |||||||| ||||||| |||| Sbjct: 25321 ttgcgactagatctcagctga 25301 Score = 73.8 bits (37), Expect = 6e-10 Identities = 46/49 (93%) Strand = Plus / Minus Query: 386 accttgtcatccatttcatccatcaagggaacttgcctatccaattcct 434 ||||| || |||||||||||||||||||||||||||||||||| ||||| Sbjct: 25052 accttctcgtccatttcatccatcaagggaacttgcctatccagttcct 25004 Score = 58.0 bits (29), Expect = 4e-05 Identities = 59/70 (84%) Strand = Plus / Minus Query: 501 cctgcttcattctacgcatntnatattcctgacgaaacttgnttgattcttcagtcccct 560 |||| |||||| | ||||| | ||||||| ||||||||| |||||||||| || |||| Sbjct: 24732 cctgtttcattttgcgcatctcatattcccgacgaaactgatttgattcttctgttccct 24673 Query: 561 taaagtactc 570 |||||||||| Sbjct: 24672 taaagtactc 24663
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 99.6 bits (50), Expect = 1e-17 Identities = 68/74 (91%) Strand = Plus / Minus Query: 432 cctcgttcatatccgatgccatgttcttcagagttgccagcccttcaccaataacatcca 491 |||| |||||||| ||||||||||| ||||||||| ||||||||||||| |||| ||||| Sbjct: 27312454 cctcattcatatcagatgccatgtttttcagagtttccagcccttcaccgataatatcca 27312395 Query: 492 aaccttcatcctgc 505 |||||||||||||| Sbjct: 27312394 aaccttcatcctgc 27312381 Score = 73.8 bits (37), Expect = 6e-10 Identities = 70/81 (86%) Strand = Plus / Minus Query: 248 ttgtaaaggtaggcagcgataccaagtatgacacagagcaggacaatgtcgatgcagaag 307 |||||||| || || || |||||||| || |||||||||||||| || || ||||||||| Sbjct: 27312924 ttgtaaagataagccgcaataccaagaataacacagagcaggacgatatcaatgcagaag 27312865 Query: 308 ttgcgactggatctcatctga 328 |||||||| ||||||| |||| Sbjct: 27312864 ttgcgactagatctcagctga 27312844 Score = 73.8 bits (37), Expect = 6e-10 Identities = 46/49 (93%) Strand = Plus / Minus Query: 386 accttgtcatccatttcatccatcaagggaacttgcctatccaattcct 434 ||||| || |||||||||||||||||||||||||||||||||| ||||| Sbjct: 27312595 accttctcgtccatttcatccatcaagggaacttgcctatccagttcct 27312547 Score = 58.0 bits (29), Expect = 4e-05 Identities = 59/70 (84%) Strand = Plus / Minus Query: 501 cctgcttcattctacgcatntnatattcctgacgaaacttgnttgattcttcagtcccct 560 |||| |||||| | ||||| | ||||||| ||||||||| |||||||||| || |||| Sbjct: 27312275 cctgtttcattttgcgcatctcatattcccgacgaaactgatttgattcttctgttccct 27312216 Query: 561 taaagtactc 570 |||||||||| Sbjct: 27312215 taaagtactc 27312206
>ref|NM_111809.3| Arabidopsis thaliana SYP71 (SYNTAXIN OF PLANTS 71) AT3G09740 (SYP71) mRNA, complete cds Length = 1229 Score = 79.8 bits (40), Expect = 1e-11 Identities = 58/64 (90%) Strand = Plus / Minus Query: 398 atttcatccatcaagggaacttgcctatccaattcctcgttcatatccgatgccatgttc 457 ||||||||||||| |||||||| ||||||| ||||||||||||||| || ||||||||| Sbjct: 759 atttcatccatcagtggaacttgtctatccagttcctcgttcatatcagaagccatgttc 700 Query: 458 ttca 461 |||| Sbjct: 699 ttca 696
>gb|AY090358.1| Arabidopsis thaliana AT3g09740/F11F8_33 mRNA, complete cds Length = 1143 Score = 79.8 bits (40), Expect = 1e-11 Identities = 58/64 (90%) Strand = Plus / Minus Query: 398 atttcatccatcaagggaacttgcctatccaattcctcgttcatatccgatgccatgttc 457 ||||||||||||| |||||||| ||||||| ||||||||||||||| || ||||||||| Sbjct: 743 atttcatccatcagtggaacttgtctatccagttcctcgttcatatcagaagccatgttc 684 Query: 458 ttca 461 |||| Sbjct: 683 ttca 680
>gb|BT024483.1| Arabidopsis thaliana At3g09740 mRNA, complete cds Length = 801 Score = 79.8 bits (40), Expect = 1e-11 Identities = 58/64 (90%) Strand = Plus / Minus Query: 398 atttcatccatcaagggaacttgcctatccaattcctcgttcatatccgatgccatgttc 457 ||||||||||||| |||||||| ||||||| ||||||||||||||| || ||||||||| Sbjct: 638 atttcatccatcagtggaacttgtctatccagttcctcgttcatatcagaagccatgttc 579 Query: 458 ttca 461 |||| Sbjct: 578 ttca 575
>gb|AF355757.1|AF355757 Arabidopsis thaliana syntaxin of plants 71 (SYP71) mRNA, complete cds Length = 1033 Score = 79.8 bits (40), Expect = 1e-11 Identities = 58/64 (90%) Strand = Plus / Minus Query: 398 atttcatccatcaagggaacttgcctatccaattcctcgttcatatccgatgccatgttc 457 ||||||||||||| |||||||| ||||||| ||||||||||||||| || ||||||||| Sbjct: 675 atttcatccatcagtggaacttgtctatccagttcctcgttcatatcagaagccatgttc 616 Query: 458 ttca 461 |||| Sbjct: 615 ttca 612
>emb|AL132953.2|ATF18N11 Arabidopsis thaliana DNA chromosome 3, BAC clone F18N11 Length = 91274 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 269 ccaagtatgacacagagcaggacaatgtcgatgcagaagttgcgactggatctcatctga 328 ||||| || |||||||| || | |||||||||||||||||| || ||||||| ||||||| Sbjct: 42227 ccaaggatcacacagagaagaataatgtcgatgcagaagtttcggctggatcgcatctga 42286 Query: 329 a 329 | Sbjct: 42287 a 42287
>emb|BX822780.1|CNS0A64U Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB63ZG09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1147 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 398 atttcatccatcaagggaacttgcctatccaattcctcgttcatatccgatgccatgttc 457 ||||||||||||| |||||||| ||| || |||||||||||||| || ||||||||| Sbjct: 742 atttcatccatcagtggaacttgtttattcagttcctcgttcatattagaagccatgttc 683 Query: 458 ttca 461 |||| Sbjct: 682 ttca 679
>ref|NM_114397.1| Arabidopsis thaliana SYP72 (SYNTAXIN OF PLANTS 72) AT3G45280 (SYP72) mRNA, complete cds Length = 872 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 269 ccaagtatgacacagagcaggacaatgtcgatgcagaagttgcgactggatctcatctg 327 ||||| || |||||||| || | |||||||||||||||||| || ||||||| |||||| Sbjct: 806 ccaaggatcacacagagaagaataatgtcgatgcagaagtttcggctggatcgcatctg 748 Score = 40.1 bits (20), Expect = 8.3 Identities = 74/92 (80%) Strand = Plus / Minus Query: 350 acgttggtgttcttcagatctgcattggctcgatccaccttgtcatccatttcatccatc 409 |||||||| ||||||| ||| | | |||||| ||| ||||| |||||||| |||||| Sbjct: 725 acgttggtattcttcaaatccgaagtggctccatcgacctttgtttccatttcttccatc 666 Query: 410 aagggaacttgcctatccaattcctcgttcat 441 || || |||||| | || | |||||||||||| Sbjct: 665 aatgggacttgcttgtcaagttcctcgttcat 634
>gb|DQ446736.1| Arabidopsis thaliana clone pENTR221-At3g45280 syntaxin 72 (At3g45280) mRNA, complete cds Length = 804 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 269 ccaagtatgacacagagcaggacaatgtcgatgcagaagttgcgactggatctcatctg 327 ||||| || |||||||| || | |||||||||||||||||| || ||||||| |||||| Sbjct: 770 ccaaggatcacacagagaagaataatgtcgatgcagaagtttcggctggatcgcatctg 712 Score = 40.1 bits (20), Expect = 8.3 Identities = 74/92 (80%) Strand = Plus / Minus Query: 350 acgttggtgttcttcagatctgcattggctcgatccaccttgtcatccatttcatccatc 409 |||||||| ||||||| ||| | | |||||| ||| ||||| |||||||| |||||| Sbjct: 689 acgttggtattcttcaaatccgaagtggctccatcgacctttgtttccatttcttccatc 630 Query: 410 aagggaacttgcctatccaattcctcgttcat 441 || || |||||| | || | |||||||||||| Sbjct: 629 aatgggacttgcttgtcaagttcctcgttcat 598
>gb|AF355758.1|AF355758 Arabidopsis thaliana syntaxin of plants 72 (SYP72) mRNA, complete cds Length = 872 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 269 ccaagtatgacacagagcaggacaatgtcgatgcagaagttgcgactggatctcatctg 327 ||||| || |||||||| || | |||||||||||||||||| || ||||||| |||||| Sbjct: 806 ccaaggatcacacagagaagaataatgtcgatgcagaagtttcggctggatcgcatctg 748 Score = 40.1 bits (20), Expect = 8.3 Identities = 74/92 (80%) Strand = Plus / Minus Query: 350 acgttggtgttcttcagatctgcattggctcgatccaccttgtcatccatttcatccatc 409 |||||||| ||||||| ||| | | |||||| ||| ||||| |||||||| |||||| Sbjct: 725 acgttggtattcttcaaatccgaagtggctccatcgacctttgtttccatttcttccatc 666 Query: 410 aagggaacttgcctatccaattcctcgttcat 441 || || |||||| | || | |||||||||||| Sbjct: 665 aatgggacttgcttgtcaagttcctcgttcat 634
>gb|AY107058.1| Zea mays PCO100771 mRNA sequence Length = 737 Score = 50.1 bits (25), Expect = 0.009 Identities = 39/45 (86%) Strand = Plus / Minus Query: 545 gattcttcagtccccttaaagtactcgnnatnaaagtttncatca 589 |||||||| ||||||||||||||||| || ||||||| ||||| Sbjct: 708 gattcttctgtccccttaaagtactcatcatcaaagtttccatca 664
>gb|AC128638.34| Medicago truncatula clone mth2-36h10, complete sequence Length = 110895 Score = 48.1 bits (24), Expect = 0.034 Identities = 60/72 (83%) Strand = Plus / Plus Query: 432 cctcgttcatatccgatgccatgttcttcagagttgccagcccttcaccaataacatcca 491 ||||||||||||| ||||||||| |||| ||| ||| ||||| |||| ||||||| Sbjct: 93547 cctcgttcatatcgtgtgccatgtttttcaaagtatccaatccttctgcaatcacatcca 93606 Query: 492 aaccttcatcct 503 |||||||||||| Sbjct: 93607 aaccttcatcct 93618 Score = 44.1 bits (22), Expect = 0.53 Identities = 31/34 (91%) Strand = Plus / Plus Query: 401 tcatccatcaagggaacttgcctatccaattcct 434 |||||||||| |||||||||||||| ||||||| Sbjct: 93435 tcatccatcagtggaacttgcctatcaaattcct 93468
>ref|NM_116010.1| Arabidopsis thaliana SYP73 (SYNTAXIN OF PLANTS 73) AT3G61450 (SYP73) mRNA, complete cds Length = 884 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 293 atgtcgatgcagaagttgcgactggatctca 323 ||||| |||||||||||||| |||||||||| Sbjct: 795 atgtctatgcagaagttgcggctggatctca 765
>emb|AL132962.1|ATF2A19 Arabidopsis thaliana DNA chromosome 3, BAC clone F2A19 Length = 95993 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 293 atgtcgatgcagaagttgcgactggatctca 323 ||||| |||||||||||||| |||||||||| Sbjct: 33946 atgtctatgcagaagttgcggctggatctca 33916
>gb|AF355759.1|AF355759 Arabidopsis thaliana syntaxin of plants 73 (SYP73) mRNA, complete cds Length = 884 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 293 atgtcgatgcagaagttgcgactggatctca 323 ||||| |||||||||||||| |||||||||| Sbjct: 795 atgtctatgcagaagttgcggctggatctca 765
>gb|AC155164.5| Mus musculus BAC clone RP24-74L7 from chromosome 8, complete sequence Length = 193057 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 37 tcacacacacatataatgcatc 58 |||||||||||||||||||||| Sbjct: 54205 tcacacacacatataatgcatc 54184
>gb|AC016661.7|AC016661 Arabidopsis thaliana chromosome 3 BAC F11F8 genomic sequence, complete sequence Length = 107603 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Minus Query: 432 cctcgttcatatccgatgccatgttcttca 461 ||||||||||||| || ||||||||||||| Sbjct: 89192 cctcgttcatatcagaagccatgttcttca 89163 Score = 42.1 bits (21), Expect = 2.1 Identities = 33/37 (89%) Strand = Plus / Minus Query: 398 atttcatccatcaagggaacttgcctatccaattcct 434 ||||||||||||| |||||||| ||||||| ||||| Sbjct: 89310 atttcatccatcagtggaacttgtctatccagttcct 89274
>gb|AC019330.3| Homo sapiens BAC clone RP11-81N16 from 2, complete sequence Length = 167777 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 38 cacacacacatataatgcatca 59 |||||||||||||||||||||| Sbjct: 26449 cacacacacatataatgcatca 26428
>gb|AC164611.3| Mus musculus BAC clone RP23-421C2 from chromosome 8, complete sequence Length = 188068 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 37 tcacacacacatataatgcatc 58 |||||||||||||||||||||| Sbjct: 8963 tcacacacacatataatgcatc 8984
>emb|AL772249.6| Mouse DNA sequence from clone RP23-430H1 on chromosome 2, complete sequence Length = 204907 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 402 catccatcaagggaacttgcct 423 |||||||||||||||||||||| Sbjct: 64051 catccatcaagggaacttgcct 64072
>gb|AE004331.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 239 of 251 of the complete chromosome Length = 13083 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 393 catccatttcatccatcaagg 413 ||||||||||||||||||||| Sbjct: 8970 catccatttcatccatcaagg 8990
>dbj|BA000031.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 1, complete sequence Length = 3288558 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 391 gtcatccatttcatccatcaa 411 ||||||||||||||||||||| Sbjct: 3007112 gtcatccatttcatccatcaa 3007132
>gb|AY366441.1| Lemur catta microsatellite Lc5 sequence Length = 393 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 317 gatctcatctgaagaatagtctgtttcag 345 ||||||||||||| |||||||||||||| Sbjct: 393 gatctcatctgaaagatagtctgtttcag 365
>emb|BX004784.9| Zebrafish DNA sequence from clone DKEY-82I7 in linkage group 25, complete sequence Length = 160429 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 tcacacacacatataatgcat 57 ||||||||||||||||||||| Sbjct: 74762 tcacacacacatataatgcat 74742
>emb|AL929172.6| Zebrafish DNA sequence from clone DKEYP-46C10 in linkage group 25, complete sequence Length = 182666 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 tcacacacacatataatgcat 57 ||||||||||||||||||||| Sbjct: 15044 tcacacacacatataatgcat 15064
>emb|AL672052.7| Mouse DNA sequence from clone RP23-60A20 on chromosome X, complete sequence Length = 178995 Score = 42.1 bits (21), Expect = 2.1 Identities = 28/31 (90%) Strand = Plus / Minus Query: 3 tacatacaatgcagnacatncgatgcaggtc 33 ||||||| |||||| |||| ||||||||||| Sbjct: 45199 tacataccatgcagtacatacgatgcaggtc 45169
>ref|NM_101867.1| Arabidopsis thaliana hydrolase, acting on ester bonds / lipase/ structural constituent of cell wall AT1G20130 mRNA, complete cds Length = 3021 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 ataataataatctaacaaca 96 |||||||||||||||||||| Sbjct: 1457 ataataataatctaacaaca 1476
>ref|XM_638730.1| Dictyostelium discoideum hypothetical protein (DDB0217625), partial mRNA Length = 6324 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 ataataataatctaacaacaccat 100 ||||||||||| |||||||||||| Sbjct: 1712 ataataataatataacaacaccat 1735
>gb|AC157931.11| Mus musculus chromosome 5, clone RP24-159I10, complete sequence Length = 147518 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 cacacacacatataatgcat 57 |||||||||||||||||||| Sbjct: 106978 cacacacacatataatgcat 106959
>gb|AC165090.3| Mus musculus BAC clone RP23-95H4 from chromosome 8, complete sequence Length = 252334 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 cacacacacatataatgcat 57 |||||||||||||||||||| Sbjct: 171139 cacacacacatataatgcat 171158
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 aatgcaagacactaccgact 203 |||||||||||||||||||| Sbjct: 2310266 aatgcaagacactaccgact 2310247
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 aatgcaagacactaccgact 203 |||||||||||||||||||| Sbjct: 2161439 aatgcaagacactaccgact 2161420
>gb|AF076218.1| Ostreopsis siamensis internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence Length = 363 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 cacacacacatataatgcat 57 |||||||||||||||||||| Sbjct: 291 cacacacacatataatgcat 272
>emb|CR846083.9| Zebrafish DNA sequence from clone DKEYP-34A6 in linkage group 14, complete sequence Length = 163337 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 cacacacacatataatgcat 57 |||||||||||||||||||| Sbjct: 9237 cacacacacatataatgcat 9218
>emb|BX294188.11| Zebrafish DNA sequence from clone DKEY-255G14, complete sequence Length = 261943 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 caaaccttcatcctgcttca 509 |||||||||||||||||||| Sbjct: 120187 caaaccttcatcctgcttca 120206
>gb|AC116633.4| Homo sapiens BAC clone RP11-452C8 from 4, complete sequence Length = 136725 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 catcaagggaacttgcctat 425 |||||||||||||||||||| Sbjct: 40591 catcaagggaacttgcctat 40572
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 64 ttcatcaacaagcataataataatctaa 91 |||||| |||| |||||||||||||||| Sbjct: 8273203 ttcatctacaaccataataataatctaa 8273176
>gb|AC116305.2| Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence Length = 413138 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 ataataataatctaacaacaccat 100 ||||||||||| |||||||||||| Sbjct: 125910 ataataataatataacaacaccat 125933
>gb|AC022472.2|T20H2 Sequence of BAC T20H2 from Arabidopsis thaliana chromosome 1, complete sequence Length = 92710 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 ataataataatctaacaaca 96 |||||||||||||||||||| Sbjct: 30358 ataataataatctaacaaca 30339
>dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0603C10 Length = 187620 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 64 ttcatcaacaagcataataataatctaa 91 |||||| |||| |||||||||||||||| Sbjct: 66708 ttcatctacaaccataataataatctaa 66681
>emb|AJ412756.1|AED412756 Allium eduardii 5.8S rRNA gene, internal transcribed spacer 1 (ITS1) and internal transcribed spacer 2 (ITS2) Length = 646 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 accttcatcctgcttcattc 512 |||||||||||||||||||| Sbjct: 103 accttcatcctgcttcattc 122
>gb|AC131680.4| Mus musculus BAC clone RP23-346F8 from 8, complete sequence Length = 198162 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 cacacacacatataatgcat 57 |||||||||||||||||||| Sbjct: 145935 cacacacacatataatgcat 145916
>emb|AJ411959.1|AED411959 Allium eduardii 5.8S ribosomal RNA, internal transcribed spacer 1 and internal transcribed spacer 2 Length = 647 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 493 accttcatcctgcttcattc 512 |||||||||||||||||||| Sbjct: 103 accttcatcctgcttcattc 122 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,513,414 Number of Sequences: 3902068 Number of extensions: 6513414 Number of successful extensions: 189787 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 189519 Number of HSP's gapped (non-prelim): 268 length of query: 613 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 590 effective length of database: 17,143,297,704 effective search space: 10114545645360 effective search space used: 10114545645360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)