ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd21k20 |
|---|---|
| Clone Library Name | barley_pub |
>SKP1B_ARATH (Q9FHW7) SKP1-like protein 1B (SKP1-like 2) (UFO-binding protein 2)| Length = 171 Score = 186 bits (471), Expect(2) = 4e-54 Identities = 91/130 (70%), Positives = 98/130 (75%), Gaps = 8/130 (6%) Frame = -3 Query: 539 GIPLPNVNSKILSKVIEYCNKHVQXXXXXXXXXXXXXXXXXXXD--------LKNWDAEF 384 GIPLPNV SKILSKVIEYC +HV+ LK WD+EF Sbjct: 42 GIPLPNVTSKILSKVIEYCKRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEF 101 Query: 383 VKVDQATLFDLILAANFLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPDEEEE 204 +KVDQ TLFDLILAAN+LNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP+EEEE Sbjct: 102 IKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEE 161 Query: 203 IRRENQWAFE 174 +RRENQWAFE Sbjct: 162 VRRENQWAFE 171 Score = 45.4 bits (106), Expect(2) = 4e-54 Identities = 19/25 (76%), Positives = 22/25 (88%) Frame = -2 Query: 600 AVAVESQTIRHLIEDDCADNGHPAP 526 AVA+ESQTI+H+IEDDC DNG P P Sbjct: 22 AVALESQTIKHMIEDDCTDNGIPLP 46
>SKP1A_ARATH (Q39255) SKP1-like protein 1A (SKP1-like 1) (UFO-binding protein 1)| Length = 160 Score = 179 bits (453), Expect(2) = 1e-51 Identities = 86/122 (70%), Positives = 97/122 (79%) Frame = -3 Query: 539 GIPLPNVNSKILSKVIEYCNKHVQXXXXXXXXXXXXXXXXXXXDLKNWDAEFVKVDQATL 360 G+PLPNV SKIL+KVIEYC +HV+ LK WDA+F+K+DQATL Sbjct: 41 GVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDD--LKAWDADFMKIDQATL 98 Query: 359 FDLILAANFLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPDEEEEIRRENQWA 180 F+LILAAN+LNIK LLDLTCQTVADMIKGKTPEEIR TFNIKNDFTP+EEEE+RRENQWA Sbjct: 99 FELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWA 158 Query: 179 FE 174 FE Sbjct: 159 FE 160 Score = 43.9 bits (102), Expect(2) = 1e-51 Identities = 18/25 (72%), Positives = 21/25 (84%) Frame = -2 Query: 600 AVAVESQTIRHLIEDDCADNGHPAP 526 AVA+ESQTI H++EDDC DNG P P Sbjct: 21 AVALESQTIAHMVEDDCVDNGVPLP 45
>SKP1_XENLA (Q71U00) S-phase kinase-associated protein 1A (Cyclin| A/CDK2-associated protein p19) (p19A) (p19skp1) Length = 162 Score = 142 bits (359), Expect = 6e-34 Identities = 71/121 (58%), Positives = 87/121 (71%) Frame = -3 Query: 536 IPLPNVNSKILSKVIEYCNKHVQXXXXXXXXXXXXXXXXXXXDLKNWDAEFVKVDQATLF 357 +PLPNVN+ IL KVI++C H + WD EF+KVDQ TLF Sbjct: 44 VPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDD---IPVWDQEFLKVDQGTLF 100 Query: 356 DLILAANFLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPDEEEEIRRENQWAF 177 +LILAAN+L+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT +EE ++R+ENQW Sbjct: 101 ELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCE 160 Query: 176 E 174 E Sbjct: 161 E 161
>SKP1_RAT (Q6PEC4) S-phase kinase-associated protein 1A (Cyclin| A/CDK2-associated protein p19) (p19A) (p19skp1) Length = 162 Score = 142 bits (359), Expect = 6e-34 Identities = 71/121 (58%), Positives = 87/121 (71%) Frame = -3 Query: 536 IPLPNVNSKILSKVIEYCNKHVQXXXXXXXXXXXXXXXXXXXDLKNWDAEFVKVDQATLF 357 +PLPNVN+ IL KVI++C H + WD EF+KVDQ TLF Sbjct: 44 VPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDD---IPVWDQEFLKVDQGTLF 100 Query: 356 DLILAANFLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPDEEEEIRRENQWAF 177 +LILAAN+L+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT +EE ++R+ENQW Sbjct: 101 ELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCE 160 Query: 176 E 174 E Sbjct: 161 E 161
>SKP1_MOUSE (Q9WTX5) S-phase kinase-associated protein 1A (Cyclin| A/CDK2-associated protein p19) (p19A) (p19skp1) Length = 162 Score = 142 bits (359), Expect = 6e-34 Identities = 71/121 (58%), Positives = 87/121 (71%) Frame = -3 Query: 536 IPLPNVNSKILSKVIEYCNKHVQXXXXXXXXXXXXXXXXXXXDLKNWDAEFVKVDQATLF 357 +PLPNVN+ IL KVI++C H + WD EF+KVDQ TLF Sbjct: 44 VPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDD---IPVWDQEFLKVDQGTLF 100 Query: 356 DLILAANFLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPDEEEEIRRENQWAF 177 +LILAAN+L+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT +EE ++R+ENQW Sbjct: 101 ELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCE 160 Query: 176 E 174 E Sbjct: 161 E 161
>SKP1_HUMAN (P63208) S-phase kinase-associated protein 1A (Cyclin| A/CDK2-associated protein p19) (p19A) (p19skp1) (RNA polymerase II elongation factor-like protein) (Organ of Corti protein 2) (OCP-II protein) (OCP-2) (Transcription elongation factor B) (S Length = 162 Score = 142 bits (359), Expect = 6e-34 Identities = 71/121 (58%), Positives = 87/121 (71%) Frame = -3 Query: 536 IPLPNVNSKILSKVIEYCNKHVQXXXXXXXXXXXXXXXXXXXDLKNWDAEFVKVDQATLF 357 +PLPNVN+ IL KVI++C H + WD EF+KVDQ TLF Sbjct: 44 VPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDD---IPVWDQEFLKVDQGTLF 100 Query: 356 DLILAANFLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPDEEEEIRRENQWAF 177 +LILAAN+L+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT +EE ++R+ENQW Sbjct: 101 ELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCE 160 Query: 176 E 174 E Sbjct: 161 E 161
>SKP1_CAVPO (P63209) S-phase kinase-associated protein 1A (Cyclin| A/CDK2-associated protein p19) (p19A) (p19skp1) (Organ of Corti protein 2) (OCP-II protein) (OCP-2) Length = 162 Score = 142 bits (359), Expect = 6e-34 Identities = 71/121 (58%), Positives = 87/121 (71%) Frame = -3 Query: 536 IPLPNVNSKILSKVIEYCNKHVQXXXXXXXXXXXXXXXXXXXDLKNWDAEFVKVDQATLF 357 +PLPNVN+ IL KVI++C H + WD EF+KVDQ TLF Sbjct: 44 VPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDD---IPVWDQEFLKVDQGTLF 100 Query: 356 DLILAANFLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPDEEEEIRRENQWAF 177 +LILAAN+L+IKGLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT +EE ++R+ENQW Sbjct: 101 ELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCE 160 Query: 176 E 174 E Sbjct: 161 E 161
>FP21_DICDI (P52285) Glycoprotein FP21 precursor| Length = 162 Score = 137 bits (345), Expect = 2e-32 Identities = 69/118 (58%), Positives = 85/118 (72%) Frame = -3 Query: 536 IPLPNVNSKILSKVIEYCNKHVQXXXXXXXXXXXXXXXXXXXDLKNWDAEFVKVDQATLF 357 IPLPNV S IL KV++YC H Q + +D +F KVDQ TLF Sbjct: 41 IPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRLDD---IPPYDRDFCKVDQPTLF 97 Query: 356 DLILAANFLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPDEEEEIRRENQW 183 +LILAAN+L+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDFTP+EEE+IR+EN+W Sbjct: 98 ELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155
>SKP1_YEAST (P52286) Suppressor of kinetochore protein 1 (Centromere| DNA-binding protein complex CBF3 subunit D) (E3 ubiquitin ligase complex SCF subunit SKP1) Length = 193 Score = 125 bits (313), Expect = 1e-28 Identities = 61/119 (51%), Positives = 80/119 (67%) Frame = -3 Query: 536 IPLPNVNSKILSKVIEYCNKHVQXXXXXXXXXXXXXXXXXXXDLKNWDAEFVKVDQATLF 357 +P+PNV S +L KVIE+ H + +WD EF+KVDQ L+ Sbjct: 76 MPVPNVRSSVLQKVIEWAEHH----RDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLY 131 Query: 356 DLILAANFLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPDEEEEIRRENQWA 180 ++ILAAN+LNIK LLD C+ VA+MI+G++PEEIR+TFNI NDFTP+EE IRREN+WA Sbjct: 132 EIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 190
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 32.0 bits (71), Expect = 1.4 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = -2 Query: 426 AAPRR*PQELGRRVRQGRPSHPLRPHPGRKLPQHQGPTG-PDLP 298 A P P G+ + G+P +PHP ++ PQ GP G P+ P Sbjct: 154 ADPNMDPYRYGQPLPGGKPPQQQQPHPQQQPPQQPGPGGSPNRP 197
>YP222_YEAST (Q08968) UPF0061 protein YPL222w| Length = 688 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = -3 Query: 329 NIKGLLDLTCQTVADMIKGKTPEEIRKTFNI-KNDFTPDEEEEI 201 ++KGL+ L+ + ++ G T E + FNI K DF PD E +I Sbjct: 239 DLKGLIQLSDYCIEELFAGGTQFEGKPDFNIFKRDFFPDTETKI 282
>YG51_YEAST (P50089) Hypothetical 89.2 kDa protein in YHB1-PFK1 intergenic| region Length = 785 Score = 31.2 bits (69), Expect = 2.4 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 3/32 (9%) Frame = -1 Query: 229 TSHPMRRRRSAG---RTSGPLSRGACRRCHPH 143 TSHPMR+ +SAG RTS S R+ H H Sbjct: 699 TSHPMRKTKSAGLSPRTSSTSSSSGQRKAHHH 730
>PSTA_XYLFT (Q87C89) Phosphate transport system permease protein pstA| Length = 287 Score = 30.0 bits (66), Expect = 5.3 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 8/74 (10%) Frame = +1 Query: 208 SSSSGVKSFLMLKVLRISSGVLPLIM--------SATVWQVRSSRPLMLRKFAARMRSKR 363 S+S+G+ + ++L + RIS PL+ S+ ++Q +S PL++ +FA+ S Sbjct: 194 SASAGILTGILLALARISGETAPLLFTAFGNQYWSSNIFQPIASLPLVMNQFAS---SPY 250 Query: 364 VAWSTLTNSASQFL 405 +W L S + L Sbjct: 251 KSWQLLAWSGALVL 264
>PSTA_XYLFA (Q9PBK1) Phosphate transport system permease protein pstA| Length = 287 Score = 30.0 bits (66), Expect = 5.3 Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 8/74 (10%) Frame = +1 Query: 208 SSSSGVKSFLMLKVLRISSGVLPLIM--------SATVWQVRSSRPLMLRKFAARMRSKR 363 S+S+G+ + ++L + RIS PL+ S+ ++Q +S PL++ +FA+ S Sbjct: 194 SASAGILTGILLALARISGETAPLLFTAFGNQYWSSNIFQPIASLPLVMNQFAS---SPY 250 Query: 364 VAWSTLTNSASQFL 405 +W L S + L Sbjct: 251 KSWQLLAWSGALVL 264
>K1043_MOUSE (Q80XJ3) TPR repeat-containing protein KIAA1043| Length = 1691 Score = 29.3 bits (64), Expect = 9.1 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = -2 Query: 426 AAPRR*PQELGRRVRQGRPSHPLRPHPGRKLPQHQGPTGPDLPD 295 + P+ PQEL +R+ + SH L +L + GP GPD D Sbjct: 1388 STPKLDPQELAQRILEETKSHLLAV---ERLQRSGGPAGPDRED 1428
>ZIMP7_HUMAN (Q8NF64) PIAS-like protein Zimp7| Length = 920 Score = 29.3 bits (64), Expect = 9.1 Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 1/78 (1%) Frame = -2 Query: 543 NGHPAPQRQLQDPLQG-HRVLQQARPGQAXXXXRSWCVRCAAPRR*PQELGRRVRQGRPS 367 +G+P P + P QG R + PGQ + A P G+P Sbjct: 249 HGYPGPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAPSP---------GQPP 299 Query: 366 HPLRPHPGRKLPQHQGPT 313 P +PG +LP QG T Sbjct: 300 APSPSYPGHRLPLQQGMT 317
>SP110_HUMAN (Q9HB58) Sp110 nuclear body protein (Speckled 110 kDa)| (Transcriptional coactivator Sp110) (Interferon-induced protein 41/75) Length = 689 Score = 29.3 bits (64), Expect = 9.1 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 6/46 (13%) Frame = +1 Query: 43 KPICFSSDCRIDKNNHKKGR*NADMTNTKHCS------SSADGIAY 162 K IC SS R KN H++G+ +D T HCS A GI Y Sbjct: 432 KDICSSSKRRFQKNIHRRGKPKSD-TVDFHCSKLPVTCGEAKGILY 476 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,128,157 Number of Sequences: 219361 Number of extensions: 1197471 Number of successful extensions: 3971 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3765 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3955 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
