ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21k16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_153652.2| Danio rerio pleiomorphic adenoma gene-like 2 (p... 42 0.43
2gb|AF186476.2| Danio rerio pleomorphic adenoma gene-like 2 (plag... 42 0.43
3gb|AC102311.10| Mus musculus chromosome 1, clone RP24-426M1, com... 40 1.7
4gb|AC147462.2| Oryza sativa (japonica cultivar-group) chromosome... 40 1.7
5gb|AC098881.3| Mus musculus BAC clone RP23-122B20 from 18, compl... 40 1.7
6gb|AC122805.4| Mus musculus BAC clone RP23-296O23 from 3, comple... 40 1.7
7gb|AY177248.1| Oryctolagus cuniculus whey acidic protein (WAP) g... 40 1.7
8emb|CR937191.1| Single read from an extremity of a cDNA clone ma... 40 1.7
9emb|BX470077.5| Zebrafish DNA sequence from clone CH211-136P17 i... 40 1.7
10dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.7
11gb|AC022354.1|AC022354 Arabidopsis thaliana chromosome 1 BAC F9I... 40 1.7
12gb|AC135961.3| Mus musculus BAC clone RP24-494P18 from chromosom... 40 1.7
13gb|AC117576.11| Mus musculus chromosome 1, clone RP23-34E15, com... 40 1.7
14gb|AF082693.1|AF082693 Fundulus heteroclitus clone FHGA7 lactate... 40 1.7
15gb|AF082692.1|AF082692 Fundulus heteroclitus clone FHGA6 lactate... 40 1.7
16gb|AC132143.3| Mus musculus BAC clone RP23-20J10 from 3, complet... 40 1.7
17gb|U59854.1|FHU59854 Fundulus heteroclitus lactate dehydrogenase... 40 1.7
18gb|U59853.1|FHU59853 Fundulus heteroclitus lactate dehydrogenase... 40 1.7
19gb|U59843.1|FHU59843 Fundulus heteroclitus lactate dehydrogenase... 40 1.7
20gb|U59841.1|FHU59841 Fundulus heteroclitus lactate dehydrogenase... 40 1.7
21gb|U59837.1|FHU59837 Fundulus heteroclitus lactate dehydrogenase... 40 1.7
22gb|U59836.1|FHU59836 Fundulus heteroclitus lactate dehydrogenase... 40 1.7
23gb|U59835.1|FHU59835 Fundulus heteroclitus lactate dehydrogenase... 40 1.7
24gb|U59834.1|FHU59834 Fundulus heteroclitus lactate dehydrogenase... 40 1.7
25gb|U59833.1|FHU59833 Fundulus heteroclitus lactate dehydrogenase... 40 1.7
26ref|XM_509793.1| PREDICTED: Pan troglodytes similar to BB049667 ... 38 6.8
27gb|AC133204.3| Mus musculus BAC clone RP23-106N3 from chromosome... 38 6.8
28gb|AC125213.3| Mus musculus BAC clone RP23-136A14 from 7, comple... 38 6.8
29gb|AC116567.5| Mus musculus BAC clone RP23-1M9 from 5, complete ... 38 6.8
30emb|BX294154.1| Pirellula sp. strain 1 complete genome; segment ... 38 6.8
31emb|CR857862.1| Pongo pygmaeus mRNA; cDNA DKFZp469A1729 (from cl... 38 6.8
32ref|XM_941704.1| PREDICTED: Homo sapiens similar to NIMA (never ... 38 6.8
33ref|XM_370726.2| PREDICTED: Homo sapiens similar to NIMA (never ... 38 6.8
34gb|U49830.2| Caenorhabditis elegans cosmid C33F10, complete sequ... 38 6.8
35emb|BX936364.6| Zebrafish DNA sequence from clone CH211-247G11 i... 38 6.8
36gb|AC172744.2| Medicago truncatula chromosome 2 BAC clone mth2-3... 38 6.8
37gb|AC122694.2| Homo sapiens chromosome 5 clone CTD-2013M15, comp... 38 6.8

>ref|NM_153652.2| Danio rerio pleiomorphic adenoma gene-like 2 (plagl2), mRNA
          Length = 2922

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 23   tgatgatgatacaaattaacacaca 47
            ||||||||||||||||| |||||||
Sbjct: 2374 tgatgatgatacaaattcacacaca 2398



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>gb|AF186476.2| Danio rerio pleomorphic adenoma gene-like 2 (plagl2) mRNA, complete
            cds
          Length = 2922

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 23   tgatgatgatacaaattaacacaca 47
            ||||||||||||||||| |||||||
Sbjct: 2374 tgatgatgatacaaattcacacaca 2398



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>gb|AC102311.10| Mus musculus chromosome 1, clone RP24-426M1, complete sequence
          Length = 175758

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     gatacaaattaacacacaaa 49
              ||||||||||||||||||||
Sbjct: 165558 gatacaaattaacacacaaa 165539



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>gb|AC147462.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1110B01,
             complete sequence
          Length = 160142

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    tcgatgatgatgatacaaat 38
             ||||||||||||||||||||
Sbjct: 28388 tcgatgatgatgatacaaat 28407



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>gb|AC098881.3| Mus musculus BAC clone RP23-122B20 from 18, complete sequence
          Length = 226736

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     gatacaaattaacacacaaa 49
              ||||||||||||||||||||
Sbjct: 103829 gatacaaattaacacacaaa 103848



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>gb|AC122805.4| Mus musculus BAC clone RP23-296O23 from 3, complete sequence
          Length = 202733

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    gtacaagtacacatgcatat 98
             ||||||||||||||||||||
Sbjct: 22438 gtacaagtacacatgcatat 22419



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>gb|AY177248.1| Oryctolagus cuniculus whey acidic protein (WAP) gene, upstream
           regulatory region
          Length = 2560

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 2   gagggcatctcgctcgctcg 21
           ||||||||||||||||||||
Sbjct: 755 gagggcatctcgctcgctcg 774



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>emb|CR937191.1| Single read from an extremity of a cDNA clone made from Aedes
           aegypti total adult females. 5-prime end of clone
           KW0AAB2YK24AAM1 from strain Liverpool of Aedes aegypti
           (yellow fever mosquito)
          Length = 908

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 19  tcgatgatgatgatacaaat 38
           ||||||||||||||||||||
Sbjct: 318 tcgatgatgatgatacaaat 337



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>emb|BX470077.5| Zebrafish DNA sequence from clone CH211-136P17 in linkage group 5,
              complete sequence
          Length = 165851

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    gctgctaaacacatttaact 141
              ||||||||||||||||||||
Sbjct: 103691 gctgctaaacacatttaact 103672



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 19       tcgatgatgatgatacaaat 38
                ||||||||||||||||||||
Sbjct: 21435305 tcgatgatgatgatacaaat 21435324



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>gb|AC022354.1|AC022354 Arabidopsis thaliana chromosome 1 BAC F9I5 genomic sequence, complete
             sequence
          Length = 46335

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    atgatgatgatacaaattaa 41
             ||||||||||||||||||||
Sbjct: 20070 atgatgatgatacaaattaa 20089



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>gb|AC135961.3| Mus musculus BAC clone RP24-494P18 from chromosome 18, complete sequence
          Length = 197411

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     gatacaaattaacacacaaa 49
              ||||||||||||||||||||
Sbjct: 183192 gatacaaattaacacacaaa 183211



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>gb|AC117576.11| Mus musculus chromosome 1, clone RP23-34E15, complete sequence
          Length = 200174

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     gatacaaattaacacacaaa 49
              ||||||||||||||||||||
Sbjct: 170917 gatacaaattaacacacaaa 170936



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>gb|AF082693.1|AF082693 Fundulus heteroclitus clone FHGA7 lactate dehydrogenase B gene,
          promoter
          Length = 309

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 19 tcgatgatgatgatacaaat 38
          ||||||||||||||||||||
Sbjct: 54 tcgatgatgatgatacaaat 35



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>gb|AF082692.1|AF082692 Fundulus heteroclitus clone FHGA6 lactate dehydrogenase B gene,
          promoter
          Length = 315

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 19 tcgatgatgatgatacaaat 38
          ||||||||||||||||||||
Sbjct: 54 tcgatgatgatgatacaaat 35



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>gb|AC132143.3| Mus musculus BAC clone RP23-20J10 from 3, complete sequence
          Length = 205880

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 79     gtacaagtacacatgcatat 98
              ||||||||||||||||||||
Sbjct: 125910 gtacaagtacacatgcatat 125891



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>gb|U59854.1|FHU59854 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1039

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 19  tcgatgatgatgatacaaat 38
           ||||||||||||||||||||
Sbjct: 804 tcgatgatgatgatacaaat 785



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>gb|U59853.1|FHU59853 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1041

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 19  tcgatgatgatgatacaaat 38
           ||||||||||||||||||||
Sbjct: 806 tcgatgatgatgatacaaat 787



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>gb|U59843.1|FHU59843 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1040

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 19  tcgatgatgatgatacaaat 38
           ||||||||||||||||||||
Sbjct: 806 tcgatgatgatgatacaaat 787



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>gb|U59841.1|FHU59841 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1084

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 19  tcgatgatgatgatacaaat 38
           ||||||||||||||||||||
Sbjct: 844 tcgatgatgatgatacaaat 825



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>gb|U59837.1|FHU59837 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1042

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 19  tcgatgatgatgatacaaat 38
           ||||||||||||||||||||
Sbjct: 808 tcgatgatgatgatacaaat 789



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>gb|U59836.1|FHU59836 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1039

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 19  tcgatgatgatgatacaaat 38
           ||||||||||||||||||||
Sbjct: 805 tcgatgatgatgatacaaat 786



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>gb|U59835.1|FHU59835 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1038

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 19  tcgatgatgatgatacaaat 38
           ||||||||||||||||||||
Sbjct: 804 tcgatgatgatgatacaaat 785



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>gb|U59834.1|FHU59834 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1037

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 19  tcgatgatgatgatacaaat 38
           ||||||||||||||||||||
Sbjct: 802 tcgatgatgatgatacaaat 783



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>gb|U59833.1|FHU59833 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1037

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 19  tcgatgatgatgatacaaat 38
           ||||||||||||||||||||
Sbjct: 802 tcgatgatgatgatacaaat 783



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>ref|XM_509793.1| PREDICTED: Pan troglodytes similar to BB049667 protein (LOC452736),
           mRNA
          Length = 703

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 21  gatgatgatgatacaaatt 39
           |||||||||||||||||||
Sbjct: 419 gatgatgatgatacaaatt 437



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>gb|AC133204.3| Mus musculus BAC clone RP23-106N3 from chromosome 5, complete sequence
          Length = 224181

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 80    tacaagtacacatgcatat 98
             |||||||||||||||||||
Sbjct: 52160 tacaagtacacatgcatat 52142



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>gb|AC125213.3| Mus musculus BAC clone RP23-136A14 from 7, complete sequence
          Length = 194309

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 80    tacaagtacacatgcatat 98
             |||||||||||||||||||
Sbjct: 94097 tacaagtacacatgcatat 94115



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>gb|AC116567.5| Mus musculus BAC clone RP23-1M9 from 5, complete sequence
          Length = 206570

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 80     tacaagtacacatgcatat 98
              |||||||||||||||||||
Sbjct: 109745 tacaagtacacatgcatat 109763



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>emb|BX294154.1| Pirellula sp. strain 1 complete genome; segment 22/24
          Length = 299050

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 5     ggcatctcgctcgctcgat 23
             |||||||||||||||||||
Sbjct: 67178 ggcatctcgctcgctcgat 67196



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>emb|CR857862.1| Pongo pygmaeus mRNA; cDNA DKFZp469A1729 (from clone DKFZp469A1729)
          Length = 2941

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 21   gatgatgatgatacaaatt 39
            |||||||||||||||||||
Sbjct: 2178 gatgatgatgatacaaatt 2196



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>ref|XM_941704.1| PREDICTED: Homo sapiens similar to NIMA (never in mitosis gene
           a)-related expressed kinase 5 (LOC387927), mRNA
          Length = 1154

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 21  gatgatgatgatacaaatt 39
           |||||||||||||||||||
Sbjct: 413 gatgatgatgatacaaatt 431



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>ref|XM_370726.2| PREDICTED: Homo sapiens similar to NIMA (never in mitosis gene
           a)-related expressed kinase 5 (LOC387927), mRNA
          Length = 1154

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 21  gatgatgatgatacaaatt 39
           |||||||||||||||||||
Sbjct: 413 gatgatgatgatacaaatt 431



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>gb|U49830.2| Caenorhabditis elegans cosmid C33F10, complete sequence
          Length = 46463

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 20    cgatgatgatgatacaaat 38
             |||||||||||||||||||
Sbjct: 44151 cgatgatgatgatacaaat 44169



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>emb|BX936364.6| Zebrafish DNA sequence from clone CH211-247G11 in linkage group 18,
             complete sequence
          Length = 146733

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 21    gatgatgatgatacaaattaaca 43
             ||||||||||||| |||||||||
Sbjct: 61378 gatgatgatgataaaaattaaca 61400



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>gb|AC172744.2| Medicago truncatula chromosome 2 BAC clone mth2-33p17, complete
             sequence
          Length = 116124

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 77    acgtacaagtacacatgca 95
             |||||||||||||||||||
Sbjct: 23399 acgtacaagtacacatgca 23417



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>gb|AC122694.2| Homo sapiens chromosome 5 clone CTD-2013M15, complete sequence
          Length = 145789

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 30    gatacaaattaacacacaa 48
             |||||||||||||||||||
Sbjct: 46159 gatacaaattaacacacaa 46141


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,230,845
Number of Sequences: 3902068
Number of extensions: 1230845
Number of successful extensions: 91570
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91485
Number of HSP's gapped (non-prelim): 85
length of query: 142
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 121
effective length of database: 17,151,101,840
effective search space: 2075283322640
effective search space used: 2075283322640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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