Clone Name | rbasd21k16 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_153652.2| Danio rerio pleiomorphic adenoma gene-like 2 (plagl2), mRNA Length = 2922 Score = 42.1 bits (21), Expect = 0.43 Identities = 24/25 (96%) Strand = Plus / Plus Query: 23 tgatgatgatacaaattaacacaca 47 ||||||||||||||||| ||||||| Sbjct: 2374 tgatgatgatacaaattcacacaca 2398
>gb|AF186476.2| Danio rerio pleomorphic adenoma gene-like 2 (plagl2) mRNA, complete cds Length = 2922 Score = 42.1 bits (21), Expect = 0.43 Identities = 24/25 (96%) Strand = Plus / Plus Query: 23 tgatgatgatacaaattaacacaca 47 ||||||||||||||||| ||||||| Sbjct: 2374 tgatgatgatacaaattcacacaca 2398
>gb|AC102311.10| Mus musculus chromosome 1, clone RP24-426M1, complete sequence Length = 175758 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 gatacaaattaacacacaaa 49 |||||||||||||||||||| Sbjct: 165558 gatacaaattaacacacaaa 165539
>gb|AC147462.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1110B01, complete sequence Length = 160142 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 tcgatgatgatgatacaaat 38 |||||||||||||||||||| Sbjct: 28388 tcgatgatgatgatacaaat 28407
>gb|AC098881.3| Mus musculus BAC clone RP23-122B20 from 18, complete sequence Length = 226736 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gatacaaattaacacacaaa 49 |||||||||||||||||||| Sbjct: 103829 gatacaaattaacacacaaa 103848
>gb|AC122805.4| Mus musculus BAC clone RP23-296O23 from 3, complete sequence Length = 202733 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 gtacaagtacacatgcatat 98 |||||||||||||||||||| Sbjct: 22438 gtacaagtacacatgcatat 22419
>gb|AY177248.1| Oryctolagus cuniculus whey acidic protein (WAP) gene, upstream regulatory region Length = 2560 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 gagggcatctcgctcgctcg 21 |||||||||||||||||||| Sbjct: 755 gagggcatctcgctcgctcg 774
>emb|CR937191.1| Single read from an extremity of a cDNA clone made from Aedes aegypti total adult females. 5-prime end of clone KW0AAB2YK24AAM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 908 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 tcgatgatgatgatacaaat 38 |||||||||||||||||||| Sbjct: 318 tcgatgatgatgatacaaat 337
>emb|BX470077.5| Zebrafish DNA sequence from clone CH211-136P17 in linkage group 5, complete sequence Length = 165851 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 gctgctaaacacatttaact 141 |||||||||||||||||||| Sbjct: 103691 gctgctaaacacatttaact 103672
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 tcgatgatgatgatacaaat 38 |||||||||||||||||||| Sbjct: 21435305 tcgatgatgatgatacaaat 21435324
>gb|AC022354.1|AC022354 Arabidopsis thaliana chromosome 1 BAC F9I5 genomic sequence, complete sequence Length = 46335 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 atgatgatgatacaaattaa 41 |||||||||||||||||||| Sbjct: 20070 atgatgatgatacaaattaa 20089
>gb|AC135961.3| Mus musculus BAC clone RP24-494P18 from chromosome 18, complete sequence Length = 197411 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gatacaaattaacacacaaa 49 |||||||||||||||||||| Sbjct: 183192 gatacaaattaacacacaaa 183211
>gb|AC117576.11| Mus musculus chromosome 1, clone RP23-34E15, complete sequence Length = 200174 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gatacaaattaacacacaaa 49 |||||||||||||||||||| Sbjct: 170917 gatacaaattaacacacaaa 170936
>gb|AF082693.1|AF082693 Fundulus heteroclitus clone FHGA7 lactate dehydrogenase B gene, promoter Length = 309 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 tcgatgatgatgatacaaat 38 |||||||||||||||||||| Sbjct: 54 tcgatgatgatgatacaaat 35
>gb|AF082692.1|AF082692 Fundulus heteroclitus clone FHGA6 lactate dehydrogenase B gene, promoter Length = 315 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 tcgatgatgatgatacaaat 38 |||||||||||||||||||| Sbjct: 54 tcgatgatgatgatacaaat 35
>gb|AC132143.3| Mus musculus BAC clone RP23-20J10 from 3, complete sequence Length = 205880 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 gtacaagtacacatgcatat 98 |||||||||||||||||||| Sbjct: 125910 gtacaagtacacatgcatat 125891
>gb|U59854.1|FHU59854 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR Length = 1039 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 tcgatgatgatgatacaaat 38 |||||||||||||||||||| Sbjct: 804 tcgatgatgatgatacaaat 785
>gb|U59853.1|FHU59853 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR Length = 1041 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 tcgatgatgatgatacaaat 38 |||||||||||||||||||| Sbjct: 806 tcgatgatgatgatacaaat 787
>gb|U59843.1|FHU59843 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR Length = 1040 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 tcgatgatgatgatacaaat 38 |||||||||||||||||||| Sbjct: 806 tcgatgatgatgatacaaat 787
>gb|U59841.1|FHU59841 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR Length = 1084 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 tcgatgatgatgatacaaat 38 |||||||||||||||||||| Sbjct: 844 tcgatgatgatgatacaaat 825
>gb|U59837.1|FHU59837 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR Length = 1042 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 tcgatgatgatgatacaaat 38 |||||||||||||||||||| Sbjct: 808 tcgatgatgatgatacaaat 789
>gb|U59836.1|FHU59836 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR Length = 1039 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 tcgatgatgatgatacaaat 38 |||||||||||||||||||| Sbjct: 805 tcgatgatgatgatacaaat 786
>gb|U59835.1|FHU59835 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR Length = 1038 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 tcgatgatgatgatacaaat 38 |||||||||||||||||||| Sbjct: 804 tcgatgatgatgatacaaat 785
>gb|U59834.1|FHU59834 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR Length = 1037 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 tcgatgatgatgatacaaat 38 |||||||||||||||||||| Sbjct: 802 tcgatgatgatgatacaaat 783
>gb|U59833.1|FHU59833 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR Length = 1037 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 tcgatgatgatgatacaaat 38 |||||||||||||||||||| Sbjct: 802 tcgatgatgatgatacaaat 783
>ref|XM_509793.1| PREDICTED: Pan troglodytes similar to BB049667 protein (LOC452736), mRNA Length = 703 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 gatgatgatgatacaaatt 39 ||||||||||||||||||| Sbjct: 419 gatgatgatgatacaaatt 437
>gb|AC133204.3| Mus musculus BAC clone RP23-106N3 from chromosome 5, complete sequence Length = 224181 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 80 tacaagtacacatgcatat 98 ||||||||||||||||||| Sbjct: 52160 tacaagtacacatgcatat 52142
>gb|AC125213.3| Mus musculus BAC clone RP23-136A14 from 7, complete sequence Length = 194309 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 80 tacaagtacacatgcatat 98 ||||||||||||||||||| Sbjct: 94097 tacaagtacacatgcatat 94115
>gb|AC116567.5| Mus musculus BAC clone RP23-1M9 from 5, complete sequence Length = 206570 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 80 tacaagtacacatgcatat 98 ||||||||||||||||||| Sbjct: 109745 tacaagtacacatgcatat 109763
>emb|BX294154.1| Pirellula sp. strain 1 complete genome; segment 22/24 Length = 299050 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 5 ggcatctcgctcgctcgat 23 ||||||||||||||||||| Sbjct: 67178 ggcatctcgctcgctcgat 67196
>emb|CR857862.1| Pongo pygmaeus mRNA; cDNA DKFZp469A1729 (from clone DKFZp469A1729) Length = 2941 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 gatgatgatgatacaaatt 39 ||||||||||||||||||| Sbjct: 2178 gatgatgatgatacaaatt 2196
>ref|XM_941704.1| PREDICTED: Homo sapiens similar to NIMA (never in mitosis gene a)-related expressed kinase 5 (LOC387927), mRNA Length = 1154 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 gatgatgatgatacaaatt 39 ||||||||||||||||||| Sbjct: 413 gatgatgatgatacaaatt 431
>ref|XM_370726.2| PREDICTED: Homo sapiens similar to NIMA (never in mitosis gene a)-related expressed kinase 5 (LOC387927), mRNA Length = 1154 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 gatgatgatgatacaaatt 39 ||||||||||||||||||| Sbjct: 413 gatgatgatgatacaaatt 431
>gb|U49830.2| Caenorhabditis elegans cosmid C33F10, complete sequence Length = 46463 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 cgatgatgatgatacaaat 38 ||||||||||||||||||| Sbjct: 44151 cgatgatgatgatacaaat 44169
>emb|BX936364.6| Zebrafish DNA sequence from clone CH211-247G11 in linkage group 18, complete sequence Length = 146733 Score = 38.2 bits (19), Expect = 6.8 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 gatgatgatgatacaaattaaca 43 ||||||||||||| ||||||||| Sbjct: 61378 gatgatgatgataaaaattaaca 61400
>gb|AC172744.2| Medicago truncatula chromosome 2 BAC clone mth2-33p17, complete sequence Length = 116124 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 77 acgtacaagtacacatgca 95 ||||||||||||||||||| Sbjct: 23399 acgtacaagtacacatgca 23417
>gb|AC122694.2| Homo sapiens chromosome 5 clone CTD-2013M15, complete sequence Length = 145789 Score = 38.2 bits (19), Expect = 6.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 gatacaaattaacacacaa 48 ||||||||||||||||||| Sbjct: 46159 gatacaaattaacacacaa 46141 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,230,845 Number of Sequences: 3902068 Number of extensions: 1230845 Number of successful extensions: 91570 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91485 Number of HSP's gapped (non-prelim): 85 length of query: 142 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 121 effective length of database: 17,151,101,840 effective search space: 2075283322640 effective search space used: 2075283322640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)