ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21k04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LEU2_LACLA (Q02142) 3-isopropylmalate dehydratase large subunit ... 33 0.52
2FBLN5_HUMAN (Q9UBX5) Fibulin-5 precursor (FIBL-5) (Developmental... 32 2.0
3YKK5_YEAST (P34250) Hypothetical 125.6 kDa protein in AAT1-GFA1 ... 31 2.6
4FBLN5_RAT (Q9WVH8) Fibulin-5 precursor (FIBL-5) (Developmental a... 31 3.4
5FBLN5_MOUSE (Q9WVH9) Fibulin-5 precursor (FIBL-5) (Developmental... 31 3.4
6VGFR1_RAT (P53767) Vascular endothelial growth factor receptor 1... 31 3.4
7VGFR1_MOUSE (P35969) Vascular endothelial growth factor receptor... 29 9.8

>LEU2_LACLA (Q02142) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 460

 Score = 33.5 bits (75), Expect = 0.52
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +2

Query: 329 HCARTSNNSTKGRRGHSSI*NCCSKIFAA 415
           HCA TSN + +GR+GH++  + CS   AA
Sbjct: 415 HCASTSNRNFEGRQGHNARTHLCSPAMAA 443



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>FBLN5_HUMAN (Q9UBX5) Fibulin-5 precursor (FIBL-5) (Developmental arteries and|
           neural crest EGF-like protein) (Dance) (Urine p50
           protein) (UP50)
          Length = 448

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
 Frame = -2

Query: 545 GLCKQFPPDVPIAAG*TCLANF----DMQNFSVLNSFRTKF*SKSCVEQQIFCYNNFRCC 378
           G C+Q   +VP +   TC   F    D ++   +N   T+     CV+  +  Y +F C 
Sbjct: 175 GYCQQLCANVPGSYSCTCNPGFTLNEDGRSCQDVNECATE---NPCVQTCVNTYGSFICR 231

Query: 377 CDPSCPLLNYYWF*HSDLGACS----CTFALSFCPCPCDSLSRTSFQS 246
           CDP   L         D   CS    C+F+   C   C +   T F S
Sbjct: 232 CDPGYEL-------EEDGVHCSDMDECSFSEFLCQHECVNQPGTYFCS 272



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>YKK5_YEAST (P34250) Hypothetical 125.6 kDa protein in AAT1-GFA1 intergenic|
           region
          Length = 1132

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 23/73 (31%), Positives = 31/73 (42%)
 Frame = +2

Query: 158 LQQSTQAIKSEKASILGCQHGES*AEQQNPTEMMS*KGNHRDKGRRIKQMYNYRHLNHCA 337
           + Q  Q+  S   SI G       +  +  + M+   GN R   +R   + N  H N   
Sbjct: 32  IPQYNQSFTSRTTSIAGINRYTMLSNSRTNSRMLLMNGNVRQYSKRTSSLPNQGHKN--- 88

Query: 338 RTSNNSTKGRRGH 376
            TSNNS  GRR H
Sbjct: 89  -TSNNSA-GRRQH 99



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>FBLN5_RAT (Q9WVH8) Fibulin-5 precursor (FIBL-5) (Developmental arteries and|
           neural crest EGF-like protein) (Dance) (Embryonic
           vascular EGF repeat-containing protein) (EVEC)
          Length = 448

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 15/104 (14%)
 Frame = -2

Query: 545 GLCKQFPPDVPIAAG*TCLANF----DMQNFSVLNSFRTKF*SKSCVEQQIFCYNNFRCC 378
           G C+Q   +VP +   TC   F    D ++   +N   T+     CV+  +  Y +F C 
Sbjct: 175 GYCQQLCANVPGSYSCTCNPGFTLNDDGRSCQDVNECETE---NPCVQTCVNTYGSFICR 231

Query: 377 CDPSCPLLNYYWF*HSDLGACSCTFALS-----------FCPCP 279
           CDP    L       SD+  CS +  L            FC CP
Sbjct: 232 CDPGYE-LEEDGIHCSDMDECSFSEFLCQHECVNQPGSYFCSCP 274



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>FBLN5_MOUSE (Q9WVH9) Fibulin-5 precursor (FIBL-5) (Developmental arteries and|
           neural crest EGF-like protein) (Dance)
          Length = 448

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 15/104 (14%)
 Frame = -2

Query: 545 GLCKQFPPDVPIAAG*TCLANF----DMQNFSVLNSFRTKF*SKSCVEQQIFCYNNFRCC 378
           G C+Q   +VP +   TC   F    D ++   +N   T+     CV+  +  Y +F C 
Sbjct: 175 GYCQQLCANVPGSYSCTCNPGFTLNDDGRSCQDVNECETE---NPCVQTCVNTYGSFICR 231

Query: 377 CDPSCPLLNYYWF*HSDLGACSCTFALS-----------FCPCP 279
           CDP    L       SD+  CS +  L            FC CP
Sbjct: 232 CDPGYE-LEEDGIHCSDMDECSFSEFLCQHECVNQPGSYFCSCP 274



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>VGFR1_RAT (P53767) Vascular endothelial growth factor receptor 1 precursor|
           (EC 2.7.10.1) (VEGFR-1) (Tyrosine-protein kinase
           receptor FLT) (FLT-1)
          Length = 1336

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 10  VAEQTKQ*SVTRPHCGIDTTLYCTILCSPSVQNNHSPLHA 129
           V+++ K+ SVTR  CG +   +C+ L     Q NH+ L++
Sbjct: 67  VSQEDKKLSVTRSACGRNNRQFCSTLTLNMAQANHTGLYS 106



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>VGFR1_MOUSE (P35969) Vascular endothelial growth factor receptor 1 precursor|
           (EC 2.7.10.1) (VEGFR-1) (Tyrosine-protein kinase
           receptor FLT) (FLT-1) (Embryonic receptor kinase 2)
          Length = 1333

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 10  VAEQTKQ*SVTRPH-CGIDTTLYCTILCSPSVQNNHSPLH 126
           V+++ K+ S+T P  CG D   +C+ L   + Q NH+ L+
Sbjct: 67  VSQEDKRLSITPPSACGRDNRQFCSTLTLDTAQANHTGLY 106


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,557,906
Number of Sequences: 219361
Number of extensions: 1719290
Number of successful extensions: 4259
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4258
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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