Clone Name | rbasd21k04 |
---|---|
Clone Library Name | barley_pub |
>LEU2_LACLA (Q02142) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 460 Score = 33.5 bits (75), Expect = 0.52 Identities = 14/29 (48%), Positives = 20/29 (68%) Frame = +2 Query: 329 HCARTSNNSTKGRRGHSSI*NCCSKIFAA 415 HCA TSN + +GR+GH++ + CS AA Sbjct: 415 HCASTSNRNFEGRQGHNARTHLCSPAMAA 443
>FBLN5_HUMAN (Q9UBX5) Fibulin-5 precursor (FIBL-5) (Developmental arteries and| neural crest EGF-like protein) (Dance) (Urine p50 protein) (UP50) Length = 448 Score = 31.6 bits (70), Expect = 2.0 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 8/108 (7%) Frame = -2 Query: 545 GLCKQFPPDVPIAAG*TCLANF----DMQNFSVLNSFRTKF*SKSCVEQQIFCYNNFRCC 378 G C+Q +VP + TC F D ++ +N T+ CV+ + Y +F C Sbjct: 175 GYCQQLCANVPGSYSCTCNPGFTLNEDGRSCQDVNECATE---NPCVQTCVNTYGSFICR 231 Query: 377 CDPSCPLLNYYWF*HSDLGACS----CTFALSFCPCPCDSLSRTSFQS 246 CDP L D CS C+F+ C C + T F S Sbjct: 232 CDPGYEL-------EEDGVHCSDMDECSFSEFLCQHECVNQPGTYFCS 272
>YKK5_YEAST (P34250) Hypothetical 125.6 kDa protein in AAT1-GFA1 intergenic| region Length = 1132 Score = 31.2 bits (69), Expect = 2.6 Identities = 23/73 (31%), Positives = 31/73 (42%) Frame = +2 Query: 158 LQQSTQAIKSEKASILGCQHGES*AEQQNPTEMMS*KGNHRDKGRRIKQMYNYRHLNHCA 337 + Q Q+ S SI G + + + M+ GN R +R + N H N Sbjct: 32 IPQYNQSFTSRTTSIAGINRYTMLSNSRTNSRMLLMNGNVRQYSKRTSSLPNQGHKN--- 88 Query: 338 RTSNNSTKGRRGH 376 TSNNS GRR H Sbjct: 89 -TSNNSA-GRRQH 99
>FBLN5_RAT (Q9WVH8) Fibulin-5 precursor (FIBL-5) (Developmental arteries and| neural crest EGF-like protein) (Dance) (Embryonic vascular EGF repeat-containing protein) (EVEC) Length = 448 Score = 30.8 bits (68), Expect = 3.4 Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 15/104 (14%) Frame = -2 Query: 545 GLCKQFPPDVPIAAG*TCLANF----DMQNFSVLNSFRTKF*SKSCVEQQIFCYNNFRCC 378 G C+Q +VP + TC F D ++ +N T+ CV+ + Y +F C Sbjct: 175 GYCQQLCANVPGSYSCTCNPGFTLNDDGRSCQDVNECETE---NPCVQTCVNTYGSFICR 231 Query: 377 CDPSCPLLNYYWF*HSDLGACSCTFALS-----------FCPCP 279 CDP L SD+ CS + L FC CP Sbjct: 232 CDPGYE-LEEDGIHCSDMDECSFSEFLCQHECVNQPGSYFCSCP 274
>FBLN5_MOUSE (Q9WVH9) Fibulin-5 precursor (FIBL-5) (Developmental arteries and| neural crest EGF-like protein) (Dance) Length = 448 Score = 30.8 bits (68), Expect = 3.4 Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 15/104 (14%) Frame = -2 Query: 545 GLCKQFPPDVPIAAG*TCLANF----DMQNFSVLNSFRTKF*SKSCVEQQIFCYNNFRCC 378 G C+Q +VP + TC F D ++ +N T+ CV+ + Y +F C Sbjct: 175 GYCQQLCANVPGSYSCTCNPGFTLNDDGRSCQDVNECETE---NPCVQTCVNTYGSFICR 231 Query: 377 CDPSCPLLNYYWF*HSDLGACSCTFALS-----------FCPCP 279 CDP L SD+ CS + L FC CP Sbjct: 232 CDPGYE-LEEDGIHCSDMDECSFSEFLCQHECVNQPGSYFCSCP 274
>VGFR1_RAT (P53767) Vascular endothelial growth factor receptor 1 precursor| (EC 2.7.10.1) (VEGFR-1) (Tyrosine-protein kinase receptor FLT) (FLT-1) Length = 1336 Score = 30.8 bits (68), Expect = 3.4 Identities = 14/40 (35%), Positives = 24/40 (60%) Frame = +1 Query: 10 VAEQTKQ*SVTRPHCGIDTTLYCTILCSPSVQNNHSPLHA 129 V+++ K+ SVTR CG + +C+ L Q NH+ L++ Sbjct: 67 VSQEDKKLSVTRSACGRNNRQFCSTLTLNMAQANHTGLYS 106
>VGFR1_MOUSE (P35969) Vascular endothelial growth factor receptor 1 precursor| (EC 2.7.10.1) (VEGFR-1) (Tyrosine-protein kinase receptor FLT) (FLT-1) (Embryonic receptor kinase 2) Length = 1333 Score = 29.3 bits (64), Expect = 9.8 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Frame = +1 Query: 10 VAEQTKQ*SVTRPH-CGIDTTLYCTILCSPSVQNNHSPLH 126 V+++ K+ S+T P CG D +C+ L + Q NH+ L+ Sbjct: 67 VSQEDKRLSITPPSACGRDNRQFCSTLTLDTAQANHTGLY 106 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,557,906 Number of Sequences: 219361 Number of extensions: 1719290 Number of successful extensions: 4259 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 4152 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4258 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)