Clone Name | rbasd21j24 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | SNX16_RAT (P57769) Sorting nexin-16 | 28 | 7.2 | 2 | TLR22_CHICK (Q9DGB6) Toll-like receptor 2 type-2 precursor | 28 | 7.2 |
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>SNX16_RAT (P57769) Sorting nexin-16| Length = 344 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +3 Query: 180 EAIKKIVART*KHCDAXETNISTLSL 257 E++KK++ H DA ET I TLSL Sbjct: 252 ESLKKLLGEKQLHIDALETRIRTLSL 277
>TLR22_CHICK (Q9DGB6) Toll-like receptor 2 type-2 precursor| Length = 781 Score = 27.7 bits (60), Expect = 7.2 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +2 Query: 83 KIMEKEXTTCNVIGTFKWY 139 K+ME E C ++GT KWY Sbjct: 277 KLMEVEMKDCTLLGTGKWY 295 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,955,565 Number of Sequences: 219361 Number of extensions: 473466 Number of successful extensions: 701 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 698 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 701 length of database: 80,573,946 effective HSP length: 95 effective length of database: 59,734,651 effective search space used: 1433631624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)