ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21j24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SNX16_RAT (P57769) Sorting nexin-16 28 7.2
2TLR22_CHICK (Q9DGB6) Toll-like receptor 2 type-2 precursor 28 7.2

>SNX16_RAT (P57769) Sorting nexin-16|
          Length = 344

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 180 EAIKKIVART*KHCDAXETNISTLSL 257
           E++KK++     H DA ET I TLSL
Sbjct: 252 ESLKKLLGEKQLHIDALETRIRTLSL 277



to top

>TLR22_CHICK (Q9DGB6) Toll-like receptor 2 type-2 precursor|
          Length = 781

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 83  KIMEKEXTTCNVIGTFKWY 139
           K+ME E   C ++GT KWY
Sbjct: 277 KLMEVEMKDCTLLGTGKWY 295


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,955,565
Number of Sequences: 219361
Number of extensions: 473466
Number of successful extensions: 701
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top