ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21j03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_697437.1| PREDICTED: Danio rerio hypothetical protein LOC... 44 0.12
2emb|BX323819.9| Zebrafish DNA sequence from clone CH211-132F19 i... 42 0.46
3gb|AC110520.12| Mus musculus chromosome 7, clone RP23-24N16, com... 40 1.8
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 1.8
5gb|AC150845.11| Medicago truncatula clone mth2-150a2, complete s... 40 1.8
6gb|AC160464.3| Mus musculus chromosome 7, clone RP23-256J14, com... 40 1.8
7gb|AC099739.2| Oryza sativa (japonica cultivar-group) chromosome... 40 1.8
8emb|BX571867.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 40 1.8
9gb|AC154324.2| Mus musculus BAC clone RP24-494E12 from chromosom... 40 1.8
10emb|BX321906.30| Zebrafish DNA sequence from clone DKEYP-45E9 in... 40 1.8
11gb|AC008775.7| Homo sapiens chromosome 5 clone CTD-2019N2, compl... 40 1.8
12gb|AC144426.1| Oryza sativa (japonica cultivar-group) chromosome... 40 1.8
13dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.8
14emb|BX640592.10| Zebrafish DNA sequence from clone CH211-132E23 ... 40 1.8
15emb|AL671893.7| Mouse DNA sequence from clone RP23-170G19 on chr... 40 1.8
16dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.8
17gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete g... 38 7.2
18gb|AC153638.4| Mus musculus 6 BAC RP23-416H6 (Roswell Park Cance... 38 7.2
19gb|AC163331.8| Mus musculus chromosome 5, clone RP23-50G20, comp... 38 7.2
20gb|AC127592.6| Mus musculus BAC clone RP23-330A5 from chromosome... 38 7.2
21gb|AC183546.3| Pan troglodytes BAC clone CH251-245P24 from chrom... 38 7.2
22gb|AC126549.4| Mus musculus BAC clone RP24-326I12 from chromosom... 38 7.2
23gb|AC146037.1| Pan troglodytes BAC clone RP43-44A5 from 7, compl... 38 7.2
24gb|AC116119.12| Mus musculus chromosome 12, clone RP23-76D19, co... 38 7.2
25emb|Z34800.1|CEF45H7 Caenorhabditis elegans Cosmid F45H7, comple... 38 7.2
26gb|AC124565.2| Mus musculus BAC clone RP23-143I23 from 16, compl... 38 7.2
27gb|AC125072.2| Mus musculus BAC clone RP23-458I4 from 3, complet... 38 7.2
28ref|XM_720845.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 38 7.2
29gb|AC145774.1| Pan troglodytes BAC clone RP43-160F1 from 7, comp... 38 7.2
30gb|AC153352.19| Medicago truncatula clone mth2-103l4, complete s... 38 7.2
31gb|AC126780.18| Medicago truncatula clone mth2-10n4, complete se... 38 7.2
32gb|AC136974.11| Medicago truncatula clone mth2-22e9, complete se... 38 7.2
33gb|AC138453.8| Medicago truncatula clone mth2-20m14, complete se... 38 7.2
34emb|AL392045.9| Human DNA sequence from clone RP13-408A12 on chr... 38 7.2
35emb|AL078623.28|HSJ1069C8 Human DNA sequence from clone RP5-1069... 38 7.2
36emb|X81714.1|CBBONTFG C.botulinum bont/f gene 38 7.2
37emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, ... 38 7.2
38gb|AC157578.7| Mus musculus chromosome 3, clone RP24-179O3, comp... 38 7.2
39gb|AC104113.3| Homo sapiens chromosome 5 clone RP11-231G3, compl... 38 7.2
40gb|AF419149.1| Xenopus laevis mitotic phosphoprotein 22 mRNA, pa... 38 7.2
41gb|AC027285.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 38 7.2
42gb|AC109357.3| Homo sapiens BAC clone RP11-636M7 from 4, complet... 38 7.2
43gb|AC019163.8| Homo sapiens BAC clone RP11-87F15 from 4, complet... 38 7.2
44gb|AC026701.6| Homo sapiens chromosome 5 clone CTC-547D20, compl... 38 7.2
45gb|AC149032.3| Medicago truncatula chromosome 2 BAC clone mth2-8... 38 7.2
46dbj|AK080903.1| Mus musculus 4 days neonate male adipose cDNA, R... 38 7.2
47gb|AC008525.7|AC008525 Homo sapiens chromosome 5 clone CTC-467M3... 38 7.2
48gb|AY770775.1| Agelenopsis utahana haplotype 4 16S ribosomal RNA... 38 7.2
49gb|AY770774.1| Agelenopsis oregonensis haplotype 1 16S ribosomal... 38 7.2
50gb|AY770773.1| Agelenopsis utahana haplotype 2 16S ribosomal RNA... 38 7.2
51gb|AY770772.1| Agelenopsis utahana haplotype 1 16S ribosomal RNA... 38 7.2
52gb|AC156644.2| Pan troglodytes BAC clone CH251-301K8 from chromo... 38 7.2
53gb|AC018474.31| Homo sapiens 12 BAC RP11-757E18 (Roswell Park Ca... 38 7.2
54gb|AC005007.1|AC005007 Homo sapiens BAC clone GS1-51M12 from 7p2... 38 7.2
55gb|AC099706.8| Mus musculus, clone RP23-267P24, complete sequence 38 7.2
56emb|AL162507.1|ATT12C14 Arabidopsis thaliana DNA chromosome 3, B... 38 7.2
57gb|AC004492.1|AC004492 Homo sapiens BAC clone CTA-363E19 from 7q... 38 7.2
58gb|AC154862.2| Mus musculus BAC clone RP23-8G7 from 13, complete... 38 7.2
59emb|CT963105.1| Medicago truncatula chromosome 5 clone mte1-71h1... 38 7.2
60gb|AC138398.9| Mus musculus chromosome 5, clone RP23-309P20, com... 38 7.2
61gb|AC157763.2| Pan troglodytes BAC clone CH251-340C15 from chrom... 38 7.2
62gb|AC174468.2| Medicago truncatula chromosome 2 BAC clone mth2-8... 38 7.2
63emb|CT027664.2| Medicago truncatula chromosome 5 clone mth2-160e... 38 7.2
64gb|AC140324.3| Mus musculus BAC clone RP23-402K14 from 6, comple... 38 7.2
65emb|AL833803.8| Mouse DNA sequence from clone RP23-244H7 on chro... 38 7.2
66gb|L35496.1|CLOBONT Clostridium botulinum proteolytic type F neu... 38 7.2 
>ref|XM_697437.1| PREDICTED: Danio rerio hypothetical protein LOC555113 (LOC555113),
            mRNA
          Length = 1581

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 124  gatgcacaaactattgtaggat 145
            ||||||||||||||||||||||
Sbjct: 1573 gatgcacaaactattgtaggat 1552
to top
>emb|BX323819.9| Zebrafish DNA sequence from clone CH211-132F19 in linkage group 17,
             complete sequence
          Length = 178951

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 41    tttaagaaagaaataaaaggt 61
             |||||||||||||||||||||
Sbjct: 91241 tttaagaaagaaataaaaggt 91261
to top
>gb|AC110520.12| Mus musculus chromosome 7, clone RP23-24N16, complete sequence
          Length = 248540

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                          
Query: 108    ggctcccatg-tctgaagatgcacaaac 134
              |||||||||| |||||||||||||||||
Sbjct: 226218 ggctcccatgatctgaagatgcacaaac 226191
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 61      ttctctcttttgtttcagct 80
               ||||||||||||||||||||
Sbjct: 1632448 ttctctcttttgtttcagct 1632467
to top
>gb|AC150845.11| Medicago truncatula clone mth2-150a2, complete sequence
          Length = 131577

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    catgtctgaagatgcacaaa 133
              ||||||||||||||||||||
Sbjct: 104212 catgtctgaagatgcacaaa 104193
to top
>gb|AC160464.3| Mus musculus chromosome 7, clone RP23-256J14, complete sequence
          Length = 175716

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                          
Query: 108    ggctcccatg-tctgaagatgcacaaac 134
              |||||||||| |||||||||||||||||
Sbjct: 159000 ggctcccatgatctgaagatgcacaaac 159027
to top
>gb|AC099739.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1528D07,
             complete sequence
          Length = 87592

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    ttctctcttttgtttcagct 80
             ||||||||||||||||||||
Sbjct: 39894 ttctctcttttgtttcagct 39913
to top
>emb|BX571867.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              9/17
          Length = 336609

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    tgaagatgcacaaactattg 139
              ||||||||||||||||||||
Sbjct: 259956 tgaagatgcacaaactattg 259975
to top
>gb|AC154324.2| Mus musculus BAC clone RP24-494E12 from chromosome 14, complete
             sequence
          Length = 198197

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    tttaagaaagaaataaaagg 60
             ||||||||||||||||||||
Sbjct: 63294 tttaagaaagaaataaaagg 63275
to top
>emb|BX321906.30| Zebrafish DNA sequence from clone DKEYP-45E9 in linkage group 10,
             complete sequence
          Length = 164266

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    ttaagaaagaaataaaaggt 61
             ||||||||||||||||||||
Sbjct: 93198 ttaagaaagaaataaaaggt 93179
to top
>gb|AC008775.7| Homo sapiens chromosome 5 clone CTD-2019N2, complete sequence
          Length = 135503

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 69     tttgtttcagctnttttacttat 91
              |||||||||||| ||||||||||
Sbjct: 105467 tttgtttcagcttttttacttat 105489
to top
>gb|AC144426.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1015F07,
              complete sequence
          Length = 127098

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 61     ttctctcttttgtttcagct 80
              ||||||||||||||||||||
Sbjct: 112009 ttctctcttttgtttcagct 112028
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 61      ttctctcttttgtttcagct 80
               ||||||||||||||||||||
Sbjct: 1632446 ttctctcttttgtttcagct 1632465
to top
>emb|BX640592.10| Zebrafish DNA sequence from clone CH211-132E23 in linkage group 4,
              complete sequence
          Length = 186123

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     ttaagaaagaaataaaaggt 61
              ||||||||||||||||||||
Sbjct: 120269 ttaagaaagaaataaaaggt 120288
to top
>emb|AL671893.7| Mouse DNA sequence from clone RP23-170G19 on chromosome X, complete
              sequence
          Length = 175057

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     aggttctctcttttgtttca 77
              ||||||||||||||||||||
Sbjct: 155234 aggttctctcttttgtttca 155253
to top
>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
             clone:P0043E01
          Length = 154128

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    ttctctcttttgtttcagct 80
             ||||||||||||||||||||
Sbjct: 44911 ttctctcttttgtttcagct 44930
to top
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome
          Length = 1709204

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 122     aagatgcacaaactattgt 140
               |||||||||||||||||||
Sbjct: 1337234 aagatgcacaaactattgt 1337216
to top
>gb|AC153638.4| Mus musculus 6 BAC RP23-416H6 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 171957

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 40     gtttaagaaagaaataaaa 58
              |||||||||||||||||||
Sbjct: 130402 gtttaagaaagaaataaaa 130420
to top
>gb|AC163331.8| Mus musculus chromosome 5, clone RP23-50G20, complete sequence
          Length = 257982

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 41     tttaagaaagaaataaaag 59
              |||||||||||||||||||
Sbjct: 122126 tttaagaaagaaataaaag 122108
to top
>gb|AC127592.6| Mus musculus BAC clone RP23-330A5 from chromosome 16, complete sequence
          Length = 185326

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 42    ttaagaaagaaataaaagg 60
             |||||||||||||||||||
Sbjct: 32716 ttaagaaagaaataaaagg 32698
to top
>gb|AC183546.3| Pan troglodytes BAC clone CH251-245P24 from chromosome 2, complete
             sequence
          Length = 202850

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 44    aagaaagaaataaaaggttctctcttt 70
             |||||||||| | ||||||||||||||
Sbjct: 81411 aagaaagaaaaagaaggttctctcttt 81385
to top
>gb|AC126549.4| Mus musculus BAC clone RP24-326I12 from chromosome 13, complete
             sequence
          Length = 189739

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 42    ttaagaaagaaataaaagg 60
             |||||||||||||||||||
Sbjct: 46898 ttaagaaagaaataaaagg 46916
to top
>gb|AC146037.1| Pan troglodytes BAC clone RP43-44A5 from 7, complete sequence
          Length = 177637

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 41    tttaagaaagaaataaaag 59
             |||||||||||||||||||
Sbjct: 10928 tttaagaaagaaataaaag 10910
to top
>gb|AC116119.12| Mus musculus chromosome 12, clone RP23-76D19, complete sequence
          Length = 264410

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 68     ttttgtttcagctnttttactt 89
              ||||||||||||| ||||||||
Sbjct: 118734 ttttgtttcagctattttactt 118713
to top
>emb|Z34800.1|CEF45H7 Caenorhabditis elegans Cosmid F45H7, complete sequence
          Length = 39580

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 100   tacagcagggctcccatgt 118
             |||||||||||||||||||
Sbjct: 36728 tacagcagggctcccatgt 36710
to top
>gb|AC124565.2| Mus musculus BAC clone RP23-143I23 from 16, complete sequence
          Length = 177251

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 42   ttaagaaagaaataaaagg 60
            |||||||||||||||||||
Sbjct: 6112 ttaagaaagaaataaaagg 6130
to top
>gb|AC125072.2| Mus musculus BAC clone RP23-458I4 from 3, complete sequence
          Length = 192026

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 58     aggttctctcttttgtttcagct 80
              |||||||||||||| ||||||||
Sbjct: 155619 aggttctctcttttctttcagct 155597
to top
>ref|XM_720845.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05476)
            partial mRNA
          Length = 10707

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 41   tttaagaaagaaataaaag 59
            |||||||||||||||||||
Sbjct: 7822 tttaagaaagaaataaaag 7840
to top
>gb|AC145774.1| Pan troglodytes BAC clone RP43-160F1 from 7, complete sequence
          Length = 208178

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 41     tttaagaaagaaataaaag 59
              |||||||||||||||||||
Sbjct: 204274 tttaagaaagaaataaaag 204256
to top
>gb|AC153352.19| Medicago truncatula clone mth2-103l4, complete sequence
          Length = 130178

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 114   catgtctgaagatgcacaa 132
             |||||||||||||||||||
Sbjct: 79277 catgtctgaagatgcacaa 79259
to top
>gb|AC126780.18| Medicago truncatula clone mth2-10n4, complete sequence
          Length = 139213

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 114   catgtctgaagatgcacaa 132
             |||||||||||||||||||
Sbjct: 63366 catgtctgaagatgcacaa 63384
to top
>gb|AC136974.11| Medicago truncatula clone mth2-22e9, complete sequence
          Length = 124037

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 114    catgtctgaagatgcacaa 132
              |||||||||||||||||||
Sbjct: 102673 catgtctgaagatgcacaa 102655
to top
>gb|AC138453.8| Medicago truncatula clone mth2-20m14, complete sequence
          Length = 144639

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 114    catgtctgaagatgcacaa 132
              |||||||||||||||||||
Sbjct: 136920 catgtctgaagatgcacaa 136902
to top
>emb|AL392045.9| Human DNA sequence from clone RP13-408A12 on chromosome 10, complete
              sequence
          Length = 161933

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 41     tttaagaaagaaataaaag 59
              |||||||||||||||||||
Sbjct: 105845 tttaagaaagaaataaaag 105827
to top
>emb|AL078623.28|HSJ1069C8 Human DNA sequence from clone RP5-1069C8 on chromosome 20 Contains the
             3' end of a novel gene, a novel gene and a CpG island,
             complete sequence
          Length = 177102

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 2     cttcttttcttcagagttt 20
             |||||||||||||||||||
Sbjct: 63439 cttcttttcttcagagttt 63421
to top
>emb|X81714.1|CBBONTFG C.botulinum bont/f gene
          Length = 4209

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 3    ttcttttcttcagagttta 21
            |||||||||||||||||||
Sbjct: 1908 ttcttttcttcagagttta 1926
to top
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 27     ccatttattcntggtttaagaa 48
              |||||||||| |||||||||||
Sbjct: 776209 ccatttattcatggtttaagaa 776230
to top
>gb|AC157578.7| Mus musculus chromosome 3, clone RP24-179O3, complete sequence
          Length = 172143

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 58    aggttctctcttttgtttcagct 80
             |||||||||||||| ||||||||
Sbjct: 91624 aggttctctcttttctttcagct 91646
to top
>gb|AC104113.3| Homo sapiens chromosome 5 clone RP11-231G3, complete sequence
          Length = 105743

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 41    tttaagaaagaaataaaaggttc 63
             |||||||||||||||||| ||||
Sbjct: 71108 tttaagaaagaaataaaatgttc 71086
to top
>gb|AF419149.1| Xenopus laevis mitotic phosphoprotein 22 mRNA, partial cds
          Length = 949

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 47  aaagaaataaaaggttctc 65
           |||||||||||||||||||
Sbjct: 904 aaagaaataaaaggttctc 922
to top
>gb|AC027285.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-40I5, complete
             sequence
          Length = 241886

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 40    gtttaagaaagaaataaaa 58
             |||||||||||||||||||
Sbjct: 28263 gtttaagaaagaaataaaa 28281
to top
>gb|AC109357.3| Homo sapiens BAC clone RP11-636M7 from 4, complete sequence
          Length = 110883

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 59    ggttctctcttttgtttca 77
             |||||||||||||||||||
Sbjct: 61190 ggttctctcttttgtttca 61208
to top
>gb|AC019163.8| Homo sapiens BAC clone RP11-87F15 from 4, complete sequence
          Length = 217921

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 3     ttcttttcttcagagttta 21
             |||||||||||||||||||
Sbjct: 42027 ttcttttcttcagagttta 42045
to top
>gb|AC026701.6| Homo sapiens chromosome 5 clone CTC-547D20, complete sequence
          Length = 87338

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 50    gaaataaaaggttctctct 68
             |||||||||||||||||||
Sbjct: 17088 gaaataaaaggttctctct 17070
to top
>gb|AC149032.3| Medicago truncatula chromosome 2 BAC clone mth2-82k13, complete
             sequence
          Length = 113691

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 114   catgtctgaagatgcacaa 132
             |||||||||||||||||||
Sbjct: 80679 catgtctgaagatgcacaa 80697
to top
>dbj|AK080903.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length
            enriched library, clone:B430203I24
            product:unclassifiable, full insert sequence
          Length = 3267

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 42   ttaagaaagaaataaaagg 60
            |||||||||||||||||||
Sbjct: 1407 ttaagaaagaaataaaagg 1389
to top
>gb|AC008525.7|AC008525 Homo sapiens chromosome 5 clone CTC-467M3, complete sequence
          Length = 123238

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 50    gaaataaaaggttctctct 68
             |||||||||||||||||||
Sbjct: 38304 gaaataaaaggttctctct 38322
to top
>gb|AY770775.1| Agelenopsis utahana haplotype 4 16S ribosomal RNA gene, partial
           sequence; mitochondrial
          Length = 437

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 40  gtttaagaaagaaataaaa 58
           |||||||||||||||||||
Sbjct: 116 gtttaagaaagaaataaaa 98
to top
>gb|AY770774.1| Agelenopsis oregonensis haplotype 1 16S ribosomal RNA gene, partial
           sequence; mitochondrial
          Length = 424

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 40  gtttaagaaagaaataaaa 58
           |||||||||||||||||||
Sbjct: 116 gtttaagaaagaaataaaa 98
to top
>gb|AY770773.1| Agelenopsis utahana haplotype 2 16S ribosomal RNA gene, partial
           sequence; mitochondrial
          Length = 438

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 40  gtttaagaaagaaataaaa 58
           |||||||||||||||||||
Sbjct: 116 gtttaagaaagaaataaaa 98
to top
>gb|AY770772.1| Agelenopsis utahana haplotype 1 16S ribosomal RNA gene, partial
           sequence; mitochondrial
          Length = 437

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 40  gtttaagaaagaaataaaa 58
           |||||||||||||||||||
Sbjct: 116 gtttaagaaagaaataaaa 98
to top
>gb|AC156644.2| Pan troglodytes BAC clone CH251-301K8 from chromosome unknown, complete
             sequence
          Length = 165832

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 59    ggttctctcttttgtttca 77
             |||||||||||||||||||
Sbjct: 24157 ggttctctcttttgtttca 24175
to top
>gb|AC018474.31| Homo sapiens 12 BAC RP11-757E18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172303

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 44     aagaaagaaataaaaggttctct 66
              |||||| ||||||||||||||||
Sbjct: 121422 aagaaaaaaataaaaggttctct 121400
to top
>gb|AC005007.1|AC005007 Homo sapiens BAC clone GS1-51M12 from 7p21-p22, complete sequence
          Length = 136862

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 41    tttaagaaagaaataaaag 59
             |||||||||||||||||||
Sbjct: 95232 tttaagaaagaaataaaag 95250
to top
>gb|AC099706.8| Mus musculus, clone RP23-267P24, complete sequence
          Length = 168307

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 44     aagaaagaaataaaaggtt 62
              |||||||||||||||||||
Sbjct: 150395 aagaaagaaataaaaggtt 150377
to top
>emb|AL162507.1|ATT12C14 Arabidopsis thaliana DNA chromosome 3, BAC clone T12C14
          Length = 77720

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 61    ttctctcttttgtttcagc 79
             |||||||||||||||||||
Sbjct: 19169 ttctctcttttgtttcagc 19151
to top
>gb|AC004492.1|AC004492 Homo sapiens BAC clone CTA-363E19 from 7q31.1, complete sequence
          Length = 165608

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 41     tttaagaaagaaataaaag 59
              |||||||||||||||||||
Sbjct: 145117 tttaagaaagaaataaaag 145135
to top
>gb|AC154862.2| Mus musculus BAC clone RP23-8G7 from 13, complete sequence
          Length = 205028

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 42    ttaagaaagaaataaaagg 60
             |||||||||||||||||||
Sbjct: 20997 ttaagaaagaaataaaagg 20979
to top
>emb|CT963105.1| Medicago truncatula chromosome 5 clone mte1-71h1, COMPLETE SEQUENCE
          Length = 68887

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 114   catgtctgaagatgcacaa 132
             |||||||||||||||||||
Sbjct: 14316 catgtctgaagatgcacaa 14298
to top
>gb|AC138398.9| Mus musculus chromosome 5, clone RP23-309P20, complete sequence
          Length = 190846

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 41     tttaagaaagaaataaaag 59
              |||||||||||||||||||
Sbjct: 142113 tttaagaaagaaataaaag 142131
to top
>gb|AC157763.2| Pan troglodytes BAC clone CH251-340C15 from chromosome unknown,
             complete sequence
          Length = 198239

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 59    ggttctctcttttgtttca 77
             |||||||||||||||||||
Sbjct: 98180 ggttctctcttttgtttca 98162
to top
>gb|AC174468.2| Medicago truncatula chromosome 2 BAC clone mth2-89f22, complete
             sequence
          Length = 89512

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 114   catgtctgaagatgcacaa 132
             |||||||||||||||||||
Sbjct: 54855 catgtctgaagatgcacaa 54837
to top
>emb|CT027664.2| Medicago truncatula chromosome 5 clone mth2-160e5, COMPLETE SEQUENCE
          Length = 146823

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 114    catgtctgaagatgcacaa 132
              |||||||||||||||||||
Sbjct: 143707 catgtctgaagatgcacaa 143689
to top
>gb|AC140324.3| Mus musculus BAC clone RP23-402K14 from 6, complete sequence
          Length = 200190

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 38     tggtttaagaaagaaataa 56
              |||||||||||||||||||
Sbjct: 103019 tggtttaagaaagaaataa 103001
to top
>emb|AL833803.8| Mouse DNA sequence from clone RP23-244H7 on chromosome 2, complete
              sequence
          Length = 226251

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 3      ttcttttcttcagagttta 21
              |||||||||||||||||||
Sbjct: 198832 ttcttttcttcagagttta 198850
to top
>gb|L35496.1|CLOBONT Clostridium botulinum proteolytic type F neurotoxin bonT/F gene,
            complete cds, and nontoxic-nonhaemagglutinin (ntnH) gene,
            3' end
          Length = 4199

 Score = 38.2 bits (19), Expect = 7.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 3    ttcttttcttcagagttta 21
            |||||||||||||||||||
Sbjct: 1898 ttcttttcttcagagttta 1916


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,126,015
Number of Sequences: 3902068
Number of extensions: 2126015
Number of successful extensions: 185736
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 185447
Number of HSP's gapped (non-prelim): 291
length of query: 149
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 128
effective length of database: 17,151,101,840
effective search space: 2195341035520
effective search space used: 2195341035520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top