ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21i19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1XAB1_HUMAN (Q9HCN4) XPA-binding protein 1 32 1.5
2LYG2_HUMAN (Q86SG7) Lysozyme g-like protein 2 precursor 29 10.0

>XAB1_HUMAN (Q9HCN4) XPA-binding protein 1|
          Length = 374

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 546 GVSAVSGTXVDAFFEAIEASANEYMETYRADLD 448
           GVSAV GT +D  F  + ++A EY   YR + +
Sbjct: 242 GVSAVLGTGLDELFVQVTSAAEEYEREYRPEYE 274



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>LYG2_HUMAN (Q86SG7) Lysozyme g-like protein 2 precursor|
          Length = 212

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 319 GFVLQTSAEHHSLSFGLLHISPQSFH 396
           G VLQ   +H  L FGL+ +  Q++H
Sbjct: 109 GSVLQDGWDHRGLKFGLMQLDKQTYH 134


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,978,698
Number of Sequences: 219361
Number of extensions: 1068061
Number of successful extensions: 2707
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2705
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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