Clone Name | rbasd21i19 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK073391.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042P15, full insert sequence Length = 1515 Score = 258 bits (130), Expect = 2e-65 Identities = 258/301 (85%) Strand = Plus / Minus Query: 248 gaaatcctgaaatcctccaacgcctcctcttcttcctcctcatcagcgtcccccatcatt 307 |||||||||||||| || || ||| |||| ||||||||||||||||| || ||||||| Sbjct: 1280 gaaatcctgaaatcttctaatgccgcctcctcttcctcctcatcagcatcatccatcata 1221 Query: 308 tctggggcaggggttttgtccttcaaaccagtgctgagcaccacagtttgtcctttggac 367 || | ||| | |||||||||||||||||||||||||||| ||||| |||||||| || Sbjct: 1220 tccgtagcacgatttttgtccttcaaaccagtgctgagcacaacagtctgtcctttagag 1161 Query: 368 ttctccatatctctcctcaatctttccatgttctcattcctacgctcagcttctagtctc 427 || ||||| ||||| ||| |||||||||||||| |||||||||||||| |||| ||| Sbjct: 1160 ttttccatgtctctttgcaacctttccatgttctccttcctacgctcagcctctaacctc 1101 Query: 428 tccttttcagcaatccgcttgtcaagatcagccctgtaagtctccatgtattcattagcg 487 || ||||||||||||| |||||||||||||||||||||| ||||||||||||| || || Sbjct: 1100 tctttttcagcaatcctcttgtcaagatcagccctgtaattctccatgtattctttggca 1041 Query: 488 cttgcttctatagcttcaaaaaatgcatcaactncagtgccagataccgctgatactcca 547 |||||||| |||||||||||||||| || ||| ||| ||||||||| || ||||||||| Sbjct: 1040 cttgcttcaatagcttcaaaaaatgaattgactccagcgccagatacggcagatactcca 981 Query: 548 a 548 | Sbjct: 980 a 980
>gb|BT019163.1| Zea mays clone Contig828.F mRNA sequence Length = 805 Score = 200 bits (101), Expect = 3e-48 Identities = 245/292 (83%), Gaps = 1/292 (0%) Strand = Plus / Minus Query: 257 aaatcctccaacgcctcctcttcttcctcctcatcagcgtcccccatcatttctggggca 316 ||||| ||||| || ||||||||||||||||||||||| | ||||||| |||| || Sbjct: 516 aaatcttccaatgcttcctcttcttcctcctcatcagcaccatccatcatgtctgaaaca 457 Query: 317 ggggttttgtccttcaaaccagtgctgagcaccacagtttgtcctttggacttctccata 376 | |||| ||||||||||||||| ||||||||||||||||||||||||| ||| |||| Sbjct: 456 gatttttt-tccttcaaaccagtggtgagcaccacagtttgtcctttggatttcatcata 398 Query: 377 tctctcctcaatctttccatgttctcattcctacgctcagcttctagtctctccttttca 436 ||| || |||| ||||||| ||||| ||||| ||||| | || | ||| ||||||||| Sbjct: 397 tctttctgcaatttttccatattctccttcctgcgctcttcctccaatctttccttttca 338 Query: 437 gcaatccgcttgtcaagatcagccctgtaagtctccatgtattcattagcgcttgcttct 496 ||||||| ||||||||||||||||||||| || ||||||||||| || ||||| |||||| Sbjct: 337 gcaatcctcttgtcaagatcagccctgtaggtttccatgtattccttggcgctggcttct 278 Query: 497 atagcttcaaaaaatgcatcaactncagtgccagataccgctgatactccaa 548 |||||||||||||||| || ||| ||| ||||| | ||| |||||||||| Sbjct: 277 atagcttcaaaaaatgtattgactccagaaccagaaatcgcagatactccaa 226
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 182 bits (92), Expect = 8e-43 Identities = 185/216 (85%) Strand = Plus / Minus Query: 248 gaaatcctgaaatcctccaacgcctcctcttcttcctcctcatcagcgtcccccatcatt 307 |||||||||||||| || || ||| |||| ||||||||||||||||| || ||||||| Sbjct: 11147497 gaaatcctgaaatcttctaatgccgcctcctcttcctcctcatcagcatcatccatcata 11147438 Query: 308 tctggggcaggggttttgtccttcaaaccagtgctgagcaccacagtttgtcctttggac 367 || | ||| | |||||||||||||||||||||||||||| ||||| |||||||| || Sbjct: 11147437 tccgtagcacgatttttgtccttcaaaccagtgctgagcacaacagtctgtcctttagag 11147378 Query: 368 ttctccatatctctcctcaatctttccatgttctcattcctacgctcagcttctagtctc 427 || ||||| ||||| ||| |||||||||||||| |||||||||||||| |||| ||| Sbjct: 11147377 ttttccatgtctctttgcaacctttccatgttctccttcctacgctcagcctctaacctc 11147318 Query: 428 tccttttcagcaatccgcttgtcaagatcagccctg 463 || ||||||||||||| ||||||||||||||||||| Sbjct: 11147317 tctttttcagcaatcctcttgtcaagatcagccctg 11147282 Score = 83.8 bits (42), Expect = 6e-13 Identities = 77/89 (86%) Strand = Plus / Minus Query: 460 cctgtaagtctccatgtattcattagcgcttgcttctatagcttcaaaaaatgcatcaac 519 ||||||| ||||||||||||| || || |||||||| |||||||||||||||| || || Sbjct: 11147194 cctgtaattctccatgtattctttggcacttgcttcaatagcttcaaaaaatgaattgac 11147135 Query: 520 tncagtgccagataccgctgatactccaa 548 | ||| ||||||||| || |||||||||| Sbjct: 11147134 tccagcgccagatacggcagatactccaa 11147106 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctcatc 291 |||||||||||||||||||||||| Sbjct: 18034857 cgcctcctcttcttcctcctcatc 18034834 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 tcctcttcttcctcctcatca 292 ||||||||||||||||||||| Sbjct: 3256570 tcctcttcttcctcctcatca 3256550 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctca 289 |||||||||||||||||||| Sbjct: 21707837 cctcctcttcttcctcctca 21707818 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 cctcctcttcttcctcctca 289 |||||||||||||||||||| Sbjct: 13728778 cctcctcttcttcctcctca 13728797
>gb|AC118669.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0011G21, from chromosome 3, complete sequence Length = 142401 Score = 182 bits (92), Expect = 8e-43 Identities = 185/216 (85%) Strand = Plus / Minus Query: 248 gaaatcctgaaatcctccaacgcctcctcttcttcctcctcatcagcgtcccccatcatt 307 |||||||||||||| || || ||| |||| ||||||||||||||||| || ||||||| Sbjct: 60854 gaaatcctgaaatcttctaatgccgcctcctcttcctcctcatcagcatcatccatcata 60795 Query: 308 tctggggcaggggttttgtccttcaaaccagtgctgagcaccacagtttgtcctttggac 367 || | ||| | |||||||||||||||||||||||||||| ||||| |||||||| || Sbjct: 60794 tccgtagcacgatttttgtccttcaaaccagtgctgagcacaacagtctgtcctttagag 60735 Query: 368 ttctccatatctctcctcaatctttccatgttctcattcctacgctcagcttctagtctc 427 || ||||| ||||| ||| |||||||||||||| |||||||||||||| |||| ||| Sbjct: 60734 ttttccatgtctctttgcaacctttccatgttctccttcctacgctcagcctctaacctc 60675 Query: 428 tccttttcagcaatccgcttgtcaagatcagccctg 463 || ||||||||||||| ||||||||||||||||||| Sbjct: 60674 tctttttcagcaatcctcttgtcaagatcagccctg 60639 Score = 83.8 bits (42), Expect = 6e-13 Identities = 77/89 (86%) Strand = Plus / Minus Query: 460 cctgtaagtctccatgtattcattagcgcttgcttctatagcttcaaaaaatgcatcaac 519 ||||||| ||||||||||||| || || |||||||| |||||||||||||||| || || Sbjct: 60551 cctgtaattctccatgtattctttggcacttgcttcaatagcttcaaaaaatgaattgac 60492 Query: 520 tncagtgccagataccgctgatactccaa 548 | ||| ||||||||| || |||||||||| Sbjct: 60491 tccagcgccagatacggcagatactccaa 60463
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 182 bits (92), Expect = 8e-43 Identities = 185/216 (85%) Strand = Plus / Minus Query: 248 gaaatcctgaaatcctccaacgcctcctcttcttcctcctcatcagcgtcccccatcatt 307 |||||||||||||| || || ||| |||| ||||||||||||||||| || ||||||| Sbjct: 11144260 gaaatcctgaaatcttctaatgccgcctcctcttcctcctcatcagcatcatccatcata 11144201 Query: 308 tctggggcaggggttttgtccttcaaaccagtgctgagcaccacagtttgtcctttggac 367 || | ||| | |||||||||||||||||||||||||||| ||||| |||||||| || Sbjct: 11144200 tccgtagcacgatttttgtccttcaaaccagtgctgagcacaacagtctgtcctttagag 11144141 Query: 368 ttctccatatctctcctcaatctttccatgttctcattcctacgctcagcttctagtctc 427 || ||||| ||||| ||| |||||||||||||| |||||||||||||| |||| ||| Sbjct: 11144140 ttttccatgtctctttgcaacctttccatgttctccttcctacgctcagcctctaacctc 11144081 Query: 428 tccttttcagcaatccgcttgtcaagatcagccctg 463 || ||||||||||||| ||||||||||||||||||| Sbjct: 11144080 tctttttcagcaatcctcttgtcaagatcagccctg 11144045 Score = 83.8 bits (42), Expect = 6e-13 Identities = 77/89 (86%) Strand = Plus / Minus Query: 460 cctgtaagtctccatgtattcattagcgcttgcttctatagcttcaaaaaatgcatcaac 519 ||||||| ||||||||||||| || || |||||||| |||||||||||||||| || || Sbjct: 11143957 cctgtaattctccatgtattctttggcacttgcttcaatagcttcaaaaaatgaattgac 11143898 Query: 520 tncagtgccagataccgctgatactccaa 548 | ||| ||||||||| || |||||||||| Sbjct: 11143897 tccagcgccagatacggcagatactccaa 11143869 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctcatc 291 |||||||||||||||||||||||| Sbjct: 18028398 cgcctcctcttcttcctcctcatc 18028375 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 tcctcttcttcctcctcatca 292 ||||||||||||||||||||| Sbjct: 3256681 tcctcttcttcctcctcatca 3256661 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctca 289 |||||||||||||||||||| Sbjct: 21700866 cctcctcttcttcctcctca 21700847 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 cctcctcttcttcctcctca 289 |||||||||||||||||||| Sbjct: 13723753 cctcctcttcttcctcctca 13723772
>dbj|AK063868.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-E06, full insert sequence Length = 470 Score = 99.6 bits (50), Expect = 9e-18 Identities = 113/134 (84%) Strand = Plus / Minus Query: 248 gaaatcctgaaatcctccaacgcctcctcttcttcctcctcatcagcgtcccccatcatt 307 |||||||||||||| || || ||| |||| ||||||||||||||||| || ||||||| Sbjct: 140 gaaatcctgaaatcttctaatgccgcctcctcttcctcctcatcagcatcatccatcata 81 Query: 308 tctggggcaggggttttgtccttcaaaccagtgctgagcaccacagtttgtcctttggac 367 || | ||| | |||||||||||||||||||||||||||| ||||| |||||||| || Sbjct: 80 tccgtagcacgatttttgtccttcaaaccagtgctgagcacaacagtctgtcctttagag 21 Query: 368 ttctccatatctct 381 || ||||| ||||| Sbjct: 20 ttttccatgtctct 7
>ref|NM_202857.1| Arabidopsis thaliana ATP binding AT4G21800 transcript variant AT4G21800.2 mRNA, complete cds Length = 1759 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 447 tgtcaagatcagccctgtaagtctccatgtattcattagcgcttgcttc 495 |||||||||||||| ||||||| ||||||||||| | ||| |||||||| Sbjct: 992 tgtcaagatcagccttgtaagtttccatgtattcctcagcacttgcttc 944
>ref|NM_118300.2| Arabidopsis thaliana ATP binding AT4G21800 transcript variant AT4G21800.1 mRNA, complete cds Length = 1740 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 447 tgtcaagatcagccctgtaagtctccatgtattcattagcgcttgcttc 495 |||||||||||||| ||||||| ||||||||||| | ||| |||||||| Sbjct: 973 tgtcaagatcagccttgtaagtttccatgtattcctcagcacttgcttc 925
>gb|AY143879.1| Arabidopsis thaliana At4g21800/F17L22_260 mRNA, complete cds Length = 1140 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 447 tgtcaagatcagccctgtaagtctccatgtattcattagcgcttgcttc 495 |||||||||||||| ||||||| ||||||||||| | ||| |||||||| Sbjct: 889 tgtcaagatcagccttgtaagtttccatgtattcctcagcacttgcttc 841
>gb|AF419563.1|AF419563 Arabidopsis thaliana AT4g21800/F17L22_260 mRNA, complete cds Length = 1372 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 447 tgtcaagatcagccctgtaagtctccatgtattcattagcgcttgcttc 495 |||||||||||||| ||||||| ||||||||||| | ||| |||||||| Sbjct: 973 tgtcaagatcagccttgtaagtttccatgtattcctcagcacttgcttc 925
>emb|BX826859.1|CNS0A36E Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB6ZF11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1370 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 447 tgtcaagatcagccctgtaagtctccatgtattcattagcgcttgcttc 495 |||||||||||||| ||||||| ||||||||||| | ||| |||||||| Sbjct: 993 tgtcaagatcagccttgtaagtttccatgtattcctcagcacttgcttc 945
>emb|BX826827.1|CNS0A35N Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB66ZG02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 852 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 447 tgtcaagatcagccctgtaagtctccatgtattcattagcgcttgcttc 495 |||||||||||||| ||||||| ||||||||||| | ||| |||||||| Sbjct: 503 tgtcaagatcagccttgtaagtttccatgtattcctcagcacttgcttc 455
>gb|AY088472.1| Arabidopsis thaliana clone 6952 mRNA, complete sequence Length = 1372 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 447 tgtcaagatcagccctgtaagtctccatgtattcattagcgcttgcttc 495 |||||||||||||| ||||||| ||||||||||| | ||| |||||||| Sbjct: 971 tgtcaagatcagccttgtaagtttccatgtattcctcagcacttgcttc 923
>dbj|AK059348.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-C07, full insert sequence Length = 635 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 248 gaaatcctgaaatcctccaacgcctcctcttcttcctcctcatcagc 294 |||||||||||||| || || ||| |||| ||||||||||||||||| Sbjct: 50 gaaatcctgaaatcttctaatgccgcctcctcttcctcctcatcagc 4
>ref|XM_877431.1| PREDICTED: Bos taurus hypothetical protein LOC614458 (LOC614458), mRNA Length = 300 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 260 tcctccaacgcctcctcttcttcctcctc 288 ||||||| ||||||||||||||||||||| Sbjct: 131 tcctccaccgcctcctcttcttcctcctc 103
>ref|XM_468817.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1197 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctcatc 291 |||||||||||||||||||||||| Sbjct: 1158 cgcctcctcttcttcctcctcatc 1135
>ref|XM_471941.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4683 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctcatc 291 |||||||||||||||||||||||| Sbjct: 4107 cgcctcctcttcttcctcctcatc 4084
>gb|AC133861.5| Oryza sativa chromosome 3 BAC OSJNBb0031F05 genomic sequence, complete sequence Length = 131589 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Plus Query: 268 cgcctcctcttcttcctcctcatc 291 |||||||||||||||||||||||| Sbjct: 81344 cgcctcctcttcttcctcctcatc 81367
>emb|AL606589.3|OSJN00021 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008A08, complete sequence Length = 130521 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Plus Query: 268 cgcctcctcttcttcctcctcatc 291 |||||||||||||||||||||||| Sbjct: 97514 cgcctcctcttcttcctcctcatc 97537
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Plus Query: 268 cgcctcctcttcttcctcctcatc 291 |||||||||||||||||||||||| Sbjct: 15910949 cgcctcctcttcttcctcctcatc 15910972 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 268 cgcctcctcttcttcctcctcat 290 ||||||||||||||||||||||| Sbjct: 3556678 cgcctcctcttcttcctcctcat 3556700
>gb|AC147988.3| Mus musculus BAC clone RP24-459A9 from chromosome 18, complete sequence Length = 155208 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 269 gcctcctcttcttcctcctcatc 291 ||||||||||||||||||||||| Sbjct: 151077 gcctcctcttcttcctcctcatc 151055
>ref|NM_032221.3| Homo sapiens chromodomain helicase DNA binding protein 6 (CHD6), mRNA Length = 10389 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatca 292 ||||||||||||||||||||||| Sbjct: 5792 cctcctcttcttcctcctcatca 5770
>gb|AC115117.5| Mus musculus BAC clone RP23-76J12 from chromosome 18, complete sequence Length = 197626 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 269 gcctcctcttcttcctcctcatc 291 ||||||||||||||||||||||| Sbjct: 51456 gcctcctcttcttcctcctcatc 51434
>ref|XM_802452.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053507773.50) partial mRNA Length = 1986 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 263 tccaacgcctcctcttcttcctcctcatcag 293 |||||| ||||||||||||||||||| |||| Sbjct: 485 tccaactcctcctcttcttcctcctcgtcag 455
>ref|XM_803630.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053507683.30) partial mRNA Length = 4839 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 272 tcctcttcttcctcctcatcagc 294 ||||||||||||||||||||||| Sbjct: 1196 tcctcttcttcctcctcatcagc 1174
>ref|XM_806849.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511291.70) partial mRNA Length = 4839 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 272 tcctcttcttcctcctcatcagc 294 ||||||||||||||||||||||| Sbjct: 1196 tcctcttcttcctcctcatcagc 1174
>gb|AC006148.3| Homo sapiens PAC clone RP5-902E20 from 7, complete sequence Length = 121110 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 264 ccaacgcctcctcttcttcctcctcatcagc 294 ||||| ||||||||||||||||||| ||||| Sbjct: 105252 ccaacccctcctcttcttcctcctcctcagc 105222
>ref|XM_502163.1| Yarrowia lipolytica CLIB122, YALI0C23056g predicted mRNA Length = 2910 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatca 292 ||||||||||||||||||||||| Sbjct: 1360 cctcctcttcttcctcctcatca 1338
>emb|AL390244.19| Human DNA sequence from clone RP11-280F22 on chromosome 10, complete sequence Length = 101530 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 264 ccaacgcctcctcttcttcctcctcatcagc 294 ||||| ||||||||||||||||||| ||||| Sbjct: 26702 ccaacccctcctcttcttcctcctcctcagc 26672
>emb|AL354764.14| Human DNA sequence from clone RP11-307D9 on chromosome 13 Contains the 5' end of a novel gene (FLJ21007), complete sequence Length = 47352 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 264 ccaacgcctcctcttcttcctcctcatcagc 294 ||||| ||||||||||||||||||| ||||| Sbjct: 10960 ccaacccctcctcttcttcctcctcctcagc 10990
>emb|AL163532.8| Human DNA sequence from clone RP11-226D23 on chromosome 13, complete sequence Length = 20988 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 264 ccaacgcctcctcttcttcctcctcatcagc 294 ||||| ||||||||||||||||||| ||||| Sbjct: 3212 ccaacccctcctcttcttcctcctcctcagc 3242
>emb|AL031667.21|HS620E11 Human DNA sequence from clone RP4-620E11 on chromosome 20q11.2-12 Contains the 3' end of the LPIN3 gene for lipin 3, the C20orf130 gene, a novel pseudogene, the 3' end of the CHD6 gene for chromodomain helicase DNA binding protein 6, a lymphocyte antigen 6 complex locus H (LY6H) pseudogene and a CpG island, complete sequence Length = 142520 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 270 cctcctcttcttcctcctcatca 292 ||||||||||||||||||||||| Sbjct: 63385 cctcctcttcttcctcctcatca 63407
>ref|XM_969456.1| PREDICTED: Tribolium castaneum similar to transducin (beta)-like 3 (predicted) (LOC663409), mRNA Length = 2340 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 265 caacgcctcctcttcttcctcct 287 ||||||||||||||||||||||| Sbjct: 1914 caacgcctcctcttcttcctcct 1892
>emb|CR857335.1| Pongo pygmaeus mRNA; cDNA DKFZp469M0132 (from clone DKFZp469M0132) Length = 2581 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatca 292 ||||||||||||||||||||||| Sbjct: 950 cctcctcttcttcctcctcatca 928
>emb|AL606655.3|OSJN00103 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0040D15, complete sequence Length = 130618 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 268 cgcctcctcttcttcctcctcat 290 ||||||||||||||||||||||| Sbjct: 22944 cgcctcctcttcttcctcctcat 22966
>gb|AC018861.9| Homo sapiens chromosome 8, clone RP11-577N1, complete sequence Length = 187047 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 264 ccaacgcctcctcttcttcctcctcatcagc 294 ||||| ||||||||||||||||||| ||||| Sbjct: 143327 ccaactcctcctcttcttcctcctcctcagc 143297
>gb|AC090577.4| Homo sapiens chromosome 8, clone RP11-575N24, complete sequence Length = 162391 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 264 ccaacgcctcctcttcttcctcctcatcagc 294 ||||| ||||||||||||||||||| ||||| Sbjct: 152333 ccaactcctcctcttcttcctcctcctcagc 152363
>gb|AY034072.1| Homo sapiens chromodomain helicase DNA binding protein 5 (CHD5) mRNA, complete cds Length = 8326 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatca 292 ||||||||||||||||||||||| Sbjct: 5792 cctcctcttcttcctcctcatca 5770
>ref|NM_174405.2| Bos taurus 5'-nucleotidase, cytosolic II (NT5C2), mRNA Length = 2951 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatca 292 ||||||||||||||||||||||| Sbjct: 1706 cctcctcttcttcctcctcatca 1684
>gb|AC133477.2| Homo sapiens 3 BAC RP11-364M20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 101061 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 264 ccaacgcctcctcttcttcctcctcatcagc 294 ||||| ||||||||||||||||||| ||||| Sbjct: 73155 ccaacccctcctcttcttcctcctcctcagc 73125
>dbj|AK066797.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013079L05, full insert sequence Length = 3272 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctcat 290 ||||||||||||||||||||||| Sbjct: 1071 cgcctcctcttcttcctcctcat 1049
>gb|U73690.1|BTU73690 Bos taurus cytosolic IMP-GMP specific 5'-nucleotidase mRNA, complete cds Length = 2951 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatca 292 ||||||||||||||||||||||| Sbjct: 1706 cctcctcttcttcctcctcatca 1684
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatca 292 ||||||||||||||||||||||| Sbjct: 3095294 cctcctcttcttcctcctcatca 3095272
>dbj|AB037756.2| Homo sapiens mRNA for KIAA1335 protein, partial cds Length = 8116 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatca 292 ||||||||||||||||||||||| Sbjct: 3593 cctcctcttcttcctcctcatca 3571
>gb|BC108929.1| Homo sapiens carbonic anhydrase VIII, mRNA (cDNA clone MGC:120502 IMAGE:40025442), complete cds Length = 1844 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 277 cctcctcttcttcctcctcatc 256
>ref|XM_519778.1| PREDICTED: Pan troglodytes similar to carbonic anhydrase VIII; CA-related protein; carbonic anhydrase-related protein; carbonic anhydrase-like sequence; carbonate dehydratase (LOC464196), mRNA Length = 1638 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 430 cctcctcttcttcctcctcatc 409
>ref|NM_197916.1| Oryza sativa (japonica cultivar-group) putative Mutator protein (OSJNBa0056G17.28), mRNA Length = 4371 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 3961 cctcctcttcttcctcctcatc 3940
>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete sequence Length = 1347793 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 1147052 cctcctcttcttcctcctcatc 1147073 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 276 cttcttcctcctcatcagcgtcccc 300 ||||||||||||||||| ||||||| Sbjct: 680928 cttcttcctcctcatcatcgtcccc 680904
>ref|XM_616638.2| PREDICTED: Bos taurus similar to Alpha-fetoprotein enhancer binding protein (AT motif-binding factor) (AT-binding transcription factor 1) (LOC536506), mRNA Length = 3963 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 1489 cctcctcttcttcctcctcatc 1468
>ref|NG_002690.1| Homo sapiens Prader-Willi/Angelman syndrome region (PWSAS@) on chromosome 15 Length = 755217 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Minus Query: 265 caacgcctcctcttcttcctcctcatcagc 294 |||| ||||||||||||||||||| ||||| Sbjct: 347211 caacccctcctcttcttcctcctcctcagc 347182
>ref|XM_953857.1| Neurospora crassa OR74A hypothetical protein (NCU09711.1) partial mRNA Length = 2469 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Minus Query: 259 atcctccaacgcctcctcttcttcctcctc 288 |||||| ||| ||||||||||||||||||| Sbjct: 1224 atcctcaaactcctcctcttcttcctcctc 1195
>ref|XM_955626.1| Neurospora crassa OR74A hypothetical protein ( Rrp9p related protein (component of yeast U3 snoRNP) [imported] - Neurospora crassa OR74A emb|CAB88638.1|> (NCU01367.1) partial mRNA Length = 1890 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 1885 cctcctcttcttcctcctcatc 1864
>ref|XM_326859.1| Neurospora crassa OR74A hypothetical protein ( Rrp9p related protein (component of yeast U3 snoRNP) [imported] - Neurospora crassa OR74A emb|CAB88638.1| (AL3> (NCU01367.1) partial mRNA Length = 1890 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 1885 cctcctcttcttcctcctcatc 1864
>ref|XM_330360.1| Neurospora crassa OR74A hypothetical protein (NCU09711.1) partial mRNA Length = 2469 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Minus Query: 259 atcctccaacgcctcctcttcttcctcctc 288 |||||| ||| ||||||||||||||||||| Sbjct: 1224 atcctcaaactcctcctcttcttcctcctc 1195
>gb|AC140354.2| Mus musculus BAC clone RP24-249A13 from chromosome 12, complete sequence Length = 157998 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 62708 cctcctcttcttcctcctcatc 62687
>gb|AC110376.4| Mus musculus chromosome 12 clone RP23-441E7, complete sequence Length = 190516 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 5911 cctcctcttcttcctcctcatc 5890
>ref|NM_004056.4| Homo sapiens carbonic anhydrase VIII (CA8), mRNA Length = 2278 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 324 cctcctcttcttcctcctcatc 303
>ref|NM_015099.2| Homo sapiens calmodulin binding transcription activator 2 (CAMTA2), mRNA Length = 4475 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 272 tcctcttcttcctcctcatcag 293 |||||||||||||||||||||| Sbjct: 985 tcctcttcttcctcctcatcag 1006
>gb|BC005443.1| Mus musculus fibulin 2, mRNA (cDNA clone MGC:6112 IMAGE:3490759), complete cds Length = 3969 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 971 cctcctcttcttcctcctcatc 950
>gb|AC146144.2| Pan troglodytes BAC clone RP43-37J17 from 7, complete sequence Length = 206029 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 264 ccaacgcctcctcttcttcctcctca 289 ||||| |||||||||||||||||||| Sbjct: 21113 ccaacccctcctcttcttcctcctca 21138
>gb|AC124764.3| Mus musculus BAC clone RP23-166K1 from chromosome 18, complete sequence Length = 209579 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 195020 cctcctcttcttcctcctcatc 195041
>gb|AC115122.4| Mus musculus BAC clone RP24-108L20 from chromosome 14, complete sequence Length = 163480 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 271 ctcctcttcttcctcctcatca 292 |||||||||||||||||||||| Sbjct: 160962 ctcctcttcttcctcctcatca 160941
>gb|AC132616.2| Mus musculus BAC clone RP23-317F10 from chromosome 14, complete sequence Length = 213684 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 271 ctcctcttcttcctcctcatca 292 |||||||||||||||||||||| Sbjct: 15796 ctcctcttcttcctcctcatca 15775
>ref|XM_740237.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000716.04.0) partial mRNA Length = 3054 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 211 cctcctcttcttcctcctcatc 190
>ref|XM_662253.1| Cryptosporidium hominis TU502 bromodomain (Chro.40082) partial mRNA Length = 5901 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 271 ctcctcttcttcctcctcatca 292 |||||||||||||||||||||| Sbjct: 3999 ctcctcttcttcctcctcatca 3978
>gb|BC082971.1| Homo sapiens cDNA clone IMAGE:3939369, **** WARNING: chimeric clone **** Length = 3271 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 314 cctcctcttcttcctcctcatc 293
>gb|AC154906.3| Mus musculus BAC clone RP23-344H23 from chromosome 12, complete sequence Length = 205985 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 179248 cctcctcttcttcctcctcatc 179227
>emb|Z83826.13|HS473B4 Human DNA sequence from clone RP3-473B4 on chromosome X Contains the 3' end of the LOC159091 gene, two novel genes, a high-mobility group protein pseudogene and three CpG islands, complete sequence Length = 177180 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 137155 cctcctcttcttcctcctcatc 137176
>gb|AC155718.4| Mus musculus 10 BAC RP24-217J7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 155643 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 153085 cctcctcttcttcctcctcatc 153064
>gb|BC109068.1| Homo sapiens phosphodiesterase 4C, cAMP-specific (phosphodiesterase E1 dunce homolog, Drosophila), mRNA (cDNA clone IMAGE:40034058), partial cds Length = 1751 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 1538 cctcctcttcttcctcctcatc 1517
>gb|DQ329524.1| Felis catus chromosome X CUL4BX mRNA, complete cds Length = 2741 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 320 cctcctcttcttcctcctcatc 341
>emb|AL359894.9| Human DNA sequence from clone RP11-379C1 on chromosome 1 Contains the 5' end of gene KIAA1365 and a CpG island, complete sequence Length = 161040 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Minus Query: 264 ccaacgcctcctcttcttcctcctcatcag 293 ||||| ||||||||||||||||||| |||| Sbjct: 44759 ccaacccctcctcttcttcctcctcctcag 44730
>emb|AL162718.15| Human DNA sequence from clone RP11-274H24 on chromosome 6, complete sequence Length = 178872 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 264 ccaacgcctcctcttcttcctcctca 289 ||||| |||||||||||||||||||| Sbjct: 177374 ccaacccctcctcttcttcctcctca 177399
>emb|AL157786.13| Human DNA sequence from clone RP11-324O2 on chromosome 10 Contains a guanylate cyclase type protein pseudogene, the 5' end of the FACL5 for long-chain 5 fatty-acid-Coenzyme A ligase, a novel gene, the 3' end of a novel gene and a CpG island, complete sequence Length = 122591 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 264 ccaacgcctcctcttcttcctcctca 289 ||||| |||||||||||||||||||| Sbjct: 111967 ccaacccctcctcttcttcctcctca 111942
>emb|AL034450.1|HS115K14 Human DNA sequence from clone RP1-115K14 on chromosome Xq22.3-23 Contains the 5' end of a gene for lipoma HMGIC fusion-partner-like (LOC340596) and a high-mobility group box 3 (HMGB3) pseudogene, complete sequence Length = 18890 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 18737 cctcctcttcttcctcctcatc 18716
>gb|AC162297.5| Mus musculus chromosome 18, clone RP24-276H6, complete sequence Length = 190293 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 88640 cctcctcttcttcctcctcatc 88661
>emb|BX842618.1| Neurospora crassa DNA linkage group V BAC clone B13M13 Length = 75160 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 19309 cctcctcttcttcctcctcatc 19288
>gb|AC162938.5| Mus musculus BAC clone RP23-104D6 from chromosome 9, complete sequence Length = 204657 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 113706 cctcctcttcttcctcctcatc 113727
>gb|DQ425087.1| HIV-1 clone 27.10.5 from United Kingdom envelope glycoprotein (env) gene, partial cds Length = 1389 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 445 cttgtcaagatcagccctgtaa 466 |||||||||||||||||||||| Sbjct: 1229 cttgtcaagatcagccctgtaa 1208
>emb|AL353822.2|NC15E6 Neurospora crassa DNA linkage group V Cosmid contig 15E6 Length = 61843 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 14820 cctcctcttcttcctcctcatc 14799
>gb|AC164171.5| Mus musculus 10 BAC RP24-574G7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 147660 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 125324 cctcctcttcttcctcctcatc 125345
>gb|AC124303.5| Homo sapiens chromosome 15, clone RP11-145P16, complete sequence Length = 160535 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Plus Query: 265 caacgcctcctcttcttcctcctcatcagc 294 |||| ||||||||||||||||||| ||||| Sbjct: 131048 caacccctcctcttcttcctcctcctcagc 131077
>emb|AL645544.16| Mouse DNA sequence from clone RP23-327M13 on chromosome 1 Contains the gene for an ortholog of human amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19 (ALS2CR19), the 3' end of a novel gene and two CpG islands, complete sequence Length = 216046 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 53567 cctcctcttcttcctcctcatc 53588
>emb|AL596450.8| Mouse DNA sequence from clone RP23-373H2 on chromosome 11 Contains the 3' end of the Ddc gene for dopa decarboxylase, the Fignl1 gene for fidgetin-like 1, the Znfn1a1 gene for zinc finger protein, subfamily 1A, 1 (Ikaros), two novel genes and two CpG islands, complete sequence Length = 203257 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 115294 cctcctcttcttcctcctcatc 115273
>gb|AC022018.10| Homo sapiens chromosome 10 clone RP11-214N15, complete sequence Length = 159617 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 264 ccaacgcctcctcttcttcctcctca 289 ||||| |||||||||||||||||||| Sbjct: 7750 ccaacccctcctcttcttcctcctca 7725
>emb|AL833974.1|HSM805226 Homo sapiens mRNA; cDNA DKFZp564D102 (from clone DKFZp564D102) Length = 4394 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 272 tcctcttcttcctcctcatcag 293 |||||||||||||||||||||| Sbjct: 904 tcctcttcttcctcctcatcag 925
>emb|AL831849.1|HSM803166 Homo sapiens mRNA; cDNA DKFZp761C18121 (from clone DKFZp761C18121) Length = 4795 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 272 tcctcttcttcctcctcatcag 293 |||||||||||||||||||||| Sbjct: 1286 tcctcttcttcctcctcatcag 1307
>ref|NM_000923.1| Homo sapiens phosphodiesterase 4C, cAMP-specific (phosphodiesterase E1 dunce homolog, Drosophila) (PDE4C), mRNA Length = 3495 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 2137 cctcctcttcttcctcctcatc 2116
>dbj|AK095384.1| Homo sapiens cDNA FLJ38065 fis, clone CTONG2015316, highly similar to CAMP-DEPENDENT 3',5'-CYCLIC PHOSPHODIESTERASE 4C (EC 3.1.4.17) Length = 3740 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 2898 cctcctcttcttcctcctcatc 2877
>emb|CR605437.1| full-length cDNA clone CS0DL011YO08 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 2124 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 316 cctcctcttcttcctcctcatc 295
>dbj|AK090655.1| Homo sapiens cDNA FLJ33336 fis, clone BRACE2000893, highly similar to CARBONIC ANHYDRASE-RELATED PROTEIN Length = 2191 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 324 cctcctcttcttcctcctcatc 303
>gb|AC109136.1| Homo sapiens chromosome 16 clone RP11-629D22, complete sequence Length = 183080 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Minus Query: 264 ccaacgcctcctcttcttcctcctca 289 |||||||||||||||| ||||||||| Sbjct: 113430 ccaacgcctcctcttcctcctcctca 113405
>gb|AC098847.4| Homo sapiens chromosome 18, clone RP11-824M15, complete sequence Length = 206693 Score = 44.1 bits (22), Expect = 0.48 Identities = 25/26 (96%) Strand = Plus / Plus Query: 264 ccaacgcctcctcttcttcctcctca 289 |||||||||||||||||| ||||||| Sbjct: 125360 ccaacgcctcctcttcttgctcctca 125385
>dbj|AK159361.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420018E07 product:fibulin 2, full insert sequence Length = 4286 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 1303 cctcctcttcttcctcctcatc 1282
>ref|XM_937321.1| PREDICTED: Homo sapiens similar to high-mobility group box 3 (LOC203510), mRNA Length = 606 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 577 cctcctcttcttcctcctcatc 556
>ref|XM_115897.4| PREDICTED: Homo sapiens similar to high-mobility group box 3 (LOC203510), mRNA Length = 606 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 577 cctcctcttcttcctcctcatc 556
>gb|AC090567.7| Homo sapiens chromosome 8, clone RP11-18L2, complete sequence Length = 182622 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Plus Query: 264 ccaacgcctcctcttcttcctcctcatcag 293 ||||| ||||||||||||||||||| |||| Sbjct: 108859 ccaacccctcctcttcttcctcctcctcag 108888
>gb|AF250841.1|AF250841 Homo sapiens PAC clones A17157 and P0950 imprinted HBII-85 and HBII-52 small nucleolar RNA genes, complete sequence Length = 228017 Score = 44.1 bits (22), Expect = 0.48 Identities = 28/30 (93%) Strand = Plus / Minus Query: 265 caacgcctcctcttcttcctcctcatcagc 294 |||| ||||||||||||||||||| ||||| Sbjct: 40454 caacccctcctcttcttcctcctcctcagc 40425
>gb|AC068499.1|AC068499 Homo sapiens chromosome 19, cosmid R26574 (LLNL-R_225F10), complete sequence Length = 36431 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 35860 cctcctcttcttcctcctcatc 35881
>dbj|AB169897.1| Macaca fascicularis brain cDNA, clone: QtrA-10252, similar to human nucleolin (NCL), mRNA, RefSeq: NM_005381.1 Length = 2757 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 951 cctcctcttcttcctcctcatc 930
>dbj|AB168220.1| Macaca fascicularis testis cDNA clone: QtsA-10605, similar to human nucleolin (NCL), mRNA, RefSeq: NM_005381.1 Length = 2737 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 949 cctcctcttcttcctcctcatc 928
>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence Length = 139999 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 72384 cctcctcttcttcctcctcatc 72363
>gb|AC005759.1|AC005759 Homo sapiens chromosome 19, cosmid R26927, complete sequence Length = 34688 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 997 cctcctcttcttcctcctcatc 1018
>gb|AF157816.1|HSPDE4CG7 Homo sapiens cAMP specific phosphodiesterase (PDE4C) gene, exons 14 and 15 and alternative splice products, complete cds Length = 4734 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 1631 cctcctcttcttcctcctcatc 1610
>dbj|AK037212.1| Mus musculus 6 days neonate skin cDNA, RIKEN full-length enriched library, clone:A030010E16 product:unclassifiable, full insert sequence Length = 1628 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 385 cctcctcttcttcctcctcatc 406
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 22617715 cctcctcttcttcctcctcatc 22617694 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 gcctcctcttcttcctcctc 288 |||||||||||||||||||| Sbjct: 19414320 gcctcctcttcttcctcctc 19414301
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 694886 cctcctcttcttcctcctcatc 694907
>gb|AY075022.1| Homo sapiens carbonic anhydrase-related protein mRNA, complete cds Length = 1620 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 329 cctcctcttcttcctcctcatc 308
>gb|AC145857.3| Pan troglodytes BAC clone RP43-6D4 from chromosome 7, complete sequence Length = 208516 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 25953 cctcctcttcttcctcctcatc 25932
>ref|XM_225008.3| PREDICTED: Rattus norvegicus MYST histone acetyltransferase (monocytic leukemia) 3 (predicted) (Myst3_predicted), mRNA Length = 5997 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 3337 cctcctcttcttcctcctcatc 3316
>gb|AC131935.7| Homo sapiens chromosome 11, clone RP11-756D7, complete sequence Length = 184254 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 133315 cctcctcttcttcctcctcatc 133294
>dbj|AB195309.1| Rattus norvegicus MOZ mRNA for monocytic leukemia zinc finger protein, partial cds Length = 5978 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 3318 cctcctcttcttcctcctcatc 3297
>gb|AY578709.1| Branchiostoma belcheri tsingtaunese AmphiHMG1/2 gene, complete cds Length = 833 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 682 cctcctcttcttcctcctcatc 661
>gb|AC138317.11| Mus musculus chromosome 8, clone RP23-271F20, complete sequence Length = 205957 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 152879 cctcctcttcttcctcctcatc 152858
>dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498H04 Length = 151046 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 122264 cctcctcttcttcctcctcatc 122285
>ref|XM_310083.2| Anopheles gambiae str. PEST ENSANGP00000003584 (ENSANGG00000002875), partial mRNA Length = 1812 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 487 cctcctcttcttcctcctcatc 466
>gb|BC069744.1| Homo sapiens carbonic anhydrase VIII, mRNA (cDNA clone MGC:97291 IMAGE:7262540), complete cds Length = 2148 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 321 cctcctcttcttcctcctcatc 300
>gb|BC069794.1| Homo sapiens carbonic anhydrase VIII, mRNA (cDNA clone MGC:97303 IMAGE:7262552), complete cds Length = 2183 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 356 cctcctcttcttcctcctcatc 335
>gb|L04656.1|HUMCARP Homo sapiens carbonic anhydrase-related protein VIII (CA8) mRNA, partial cds Length = 941 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 74 cctcctcttcttcctcctcatc 53
>emb|AL929248.12| Mouse DNA sequence from clone RP23-354I18 on chromosome 2, complete sequence Length = 101990 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 81988 cctcctcttcttcctcctcatc 82009
>gb|AC004771.1|AC004771 Homo sapiens chromosome 17, clone hRPC.1050_D_4, complete sequence Length = 91927 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 272 tcctcttcttcctcctcatcag 293 |||||||||||||||||||||| Sbjct: 50107 tcctcttcttcctcctcatcag 50086
>gb|U88713.1|HSU88713 Human phosphodiesterase 4C mRNA, partial cds Length = 2109 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 1990 cctcctcttcttcctcctcatc 1969
>gb|U88712.1|HSU88712 Human phosphodiesterase 4C mRNA, complete cds Length = 2162 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 2043 cctcctcttcttcctcctcatc 2022
>gb|BC109067.1| Homo sapiens phosphodiesterase 4C, cAMP-specific (phosphodiesterase E1 dunce homolog, Drosophila), mRNA (cDNA clone MGC:126222 IMAGE:40034056), complete cds Length = 1701 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 1488 cctcctcttcttcctcctcatc 1467
>emb|AL591411.14| Mouse DNA sequence from clone RP23-428M13 on chromosome 2, complete sequence Length = 155889 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 154639 cctcctcttcttcctcctcatc 154660
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 22630183 cctcctcttcttcctcctcatc 22630162 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 gcctcctcttcttcctcctc 288 |||||||||||||||||||| Sbjct: 19425596 gcctcctcttcttcctcctc 19425577
>gb|U66349.1|HSPDE4C2D Homo sapiens cAMP phosphodiesterase (PDE4C) mRNA, 4C-delta109 isoform, partial cds Length = 1284 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 1171 cctcctcttcttcctcctcatc 1150
>gb|U66348.1|HSPDE4C2C Homo sapiens cAMP phosphodiesterase (PDE4C) mRNA, 4C-delta54 isoform, partial cds Length = 1559 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 1446 cctcctcttcttcctcctcatc 1425
>gb|U66347.1|HSPDE4C2B Homo sapiens cAMP phosphodiesterase (PDE4C) mRNA, 4C-426 isoform, complete cds Length = 3511 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 3021 cctcctcttcttcctcctcatc 3000
>gb|U66346.1|HSPDE4C2A Homo sapiens cAMP phosphodiesterase (PDE4C) mRNA, 4C-791 isoform, partial cds Length = 2755 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 2265 cctcctcttcttcctcctcatc 2244
>emb|AL928835.6| Zebrafish DNA sequence from clone CH211-201P7 in linkage group 1, complete sequence Length = 182427 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 82282 cctcctcttcttcctcctcatc 82261
>gb|AC132834.4| Homo sapiens chromosome 8, clone CTD-2344M9, complete sequence Length = 156318 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 28390 cctcctcttcttcctcctcatc 28369
>emb|AL591495.12| Mouse DNA sequence from clone RP23-61O3 on chromosome 2, complete sequence Length = 239758 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 239009 cctcctcttcttcctcctcatc 238988
>emb|AL672259.9| Mouse DNA sequence from clone RP23-169M4 on chromosome 2, complete sequence Length = 179832 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 136330 cctcctcttcttcctcctcatc 136309
>emb|AL627182.22| Mouse DNA sequence from clone RP23-32K12 on chromosome 4, complete sequence Length = 241562 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 99731 cctcctcttcttcctcctcatc 99752
>emb|AL807249.8| Mouse DNA sequence from clone RP23-25C1 on chromosome 4, complete sequence Length = 248479 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 194223 cctcctcttcttcctcctcatc 194202
>gb|BC015531.2| Homo sapiens carbonic anhydrase VIII, mRNA (cDNA clone IMAGE:3913757), with apparent retained intron Length = 1711 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 253 cctcctcttcttcctcctcatc 232
>emb|Z46632.1|HSPDE4C1 H.sapiens HSPDE4C1 gene for 3',5'-cyclic AMP phosphodiesterase Length = 3495 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 2137 cctcctcttcttcctcctcatc 2116
>gb|L20968.1|HUMPDED Human phosphodiesterase mRNA, 3' end Length = 1155 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 650 cctcctcttcttcctcctcatc 629
>dbj|AB020716.1| Homo sapiens mRNA for KIAA0909 protein, partial cds Length = 4465 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 272 tcctcttcttcctcctcatcag 293 |||||||||||||||||||||| Sbjct: 975 tcctcttcttcctcctcatcag 996
>emb|AL627394.15| Mouse DNA sequence from clone RP23-174I9 on chromosome 4, complete sequence Length = 116283 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatc 291 |||||||||||||||||||||| Sbjct: 63604 cctcctcttcttcctcctcatc 63583
>ref|XM_636889.1| Dictyostelium discoideum hypothetical protein (DDB0206211), partial mRNA Length = 3894 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 272 tcctcttcttcctcctcatca 292 ||||||||||||||||||||| Sbjct: 2776 tcctcttcttcctcctcatca 2796
>ref|XM_508710.1| PREDICTED: Pan troglodytes similar to KIAA1073 protein (LOC451498), mRNA Length = 6084 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 tcctcttcttcctcctcatca 292 ||||||||||||||||||||| Sbjct: 845 tcctcttcttcctcctcatca 825
>ref|XM_516472.1| PREDICTED: Pan troglodytes similar to RNA binding motif protein 6 (LOC460385), mRNA Length = 2025 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcat 290 ||||||||||||||||||||| Sbjct: 1495 cctcctcttcttcctcctcat 1475
>gb|AC095688.7| Rattus norvegicus 2 BAC CH230-9C20 (Children's Hospital Oakland Research Institute) complete sequence Length = 176590 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 ctcctcttcttcctcctcatc 291 ||||||||||||||||||||| Sbjct: 95551 ctcctcttcttcctcctcatc 95531
>ref|XM_607664.2| PREDICTED: Bos taurus similar to retrotransposon gag domain containing 4 (LOC529223), mRNA Length = 1794 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 1296 cgcctcctcttcttcctcctc 1276
>ref|XM_876440.1| PREDICTED: Bos taurus similar to Microtubule-associated protein 1A (MAP 1A) (Proliferation-related protein p80), transcript variant 4 (LOC515593), mRNA Length = 10248 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 ctcctcttcttcctcctcatc 291 ||||||||||||||||||||| Sbjct: 2458 ctcctcttcttcctcctcatc 2438
>ref|XM_876384.1| PREDICTED: Bos taurus similar to Microtubule-associated protein 1A (MAP 1A) (Proliferation-related protein p80), transcript variant 3 (LOC515593), mRNA Length = 10505 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 ctcctcttcttcctcctcatc 291 ||||||||||||||||||||| Sbjct: 2715 ctcctcttcttcctcctcatc 2695
>ref|XM_593636.2| PREDICTED: Bos taurus similar to Microtubule-associated protein 1A (MAP 1A) (Proliferation-related protein p80), transcript variant 1 (LOC515593), mRNA Length = 10302 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 ctcctcttcttcctcctcatc 291 ||||||||||||||||||||| Sbjct: 2458 ctcctcttcttcctcctcatc 2438
>ref|XM_414999.1| PREDICTED: Gallus gallus similar to ADP-ribosylation factor-like 6 interacting protein 2; ADP-ribosylation-like factor 6 interacting protein 2 (LOC416703), mRNA Length = 1356 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcat 290 ||||||||||||||||||||| Sbjct: 934 cctcctcttcttcctcctcat 914
>ref|XM_422807.1| PREDICTED: Gallus gallus similar to golgi phosphoprotein 4; type II Golgi membrane protein; 130 kDa golgi-localized phosphoprotein; cis Golgi-localized calcium-binding protein (LOC425000), mRNA Length = 1353 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcat 290 ||||||||||||||||||||| Sbjct: 1210 cctcctcttcttcctcctcat 1190
>ref|XM_416097.1| PREDICTED: Gallus gallus similar to hypothetical protein MGC23401 (LOC417855), mRNA Length = 5994 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 ctcctcttcttcctcctcatc 291 ||||||||||||||||||||| Sbjct: 2139 ctcctcttcttcctcctcatc 2119
>ref|NM_001770.4| Homo sapiens CD19 molecule (CD19), mRNA Length = 1966 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 75 cgcctcctcttcttcctcctc 95
>ref|XM_951793.1| Neurospora crassa OR74A PLASMA MEMBRANE ATPASE (PROTON PUMP) [MIPS] (NCU01680.1) partial mRNA Length = 2763 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 269 gcctcctcttcttcctcctca 289 ||||||||||||||||||||| Sbjct: 200 gcctcctcttcttcctcctca 180
>ref|XM_328118.1| Neurospora crassa OR74A PLASMA MEMBRANE ATPASE (PROTON PUMP) [MIPS] (NCU01680.1) partial mRNA Length = 2763 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 269 gcctcctcttcttcctcctca 289 ||||||||||||||||||||| Sbjct: 200 gcctcctcttcttcctcctca 180
>ref|XM_598032.2| PREDICTED: Bos taurus hypothetical LOC519807 (LOC519807), mRNA Length = 5871 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 260 tcctccaacgcctcctcttcttcctcctc 288 ||||||| | ||||||||||||||||||| Sbjct: 5378 tcctccagctcctcctcttcttcctcctc 5350
>gb|AC140451.3| Mus musculus BAC clone RP23-52L6 from chromosome 14, complete sequence Length = 224897 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcat 290 ||||||||||||||||||||| Sbjct: 107639 cctcctcttcttcctcctcat 107619
>ref|NM_024725.2| Homo sapiens coiled-coil domain containing 82 (CCDC82), mRNA Length = 2726 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 tcctcttcttcctcctcatca 292 ||||||||||||||||||||| Sbjct: 1047 tcctcttcttcctcctcatca 1027
>ref|XM_655517.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3005.2), mRNA Length = 2391 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 1182 cgcctcctcttcttcctcctc 1162
>ref|NM_005937.2| Homo sapiens myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6 (MLLT6), mRNA Length = 4914 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 989 cgcctcctcttcttcctcctc 1009
>gb|AC168853.1| Mus musculus BAC clone RP23-447G14 from chromosome 12, complete sequence Length = 188352 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcat 290 ||||||||||||||||||||| Sbjct: 112672 cctcctcttcttcctcctcat 112652
>gb|BC061267.1| Xenopus tropicalis eukaryotic translation initiation factor 3 subunit 7, mRNA (cDNA clone MGC:75703 IMAGE:5380619), complete cds Length = 1875 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 tcctcttcttcctcctcatca 292 ||||||||||||||||||||| Sbjct: 1736 tcctcttcttcctcctcatca 1716
>gb|BC056558.1| Danio rerio wu:fc27e05, mRNA (cDNA clone IMAGE:6795459), partial cds Length = 2840 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 tcctcttcttcctcctcatca 292 ||||||||||||||||||||| Sbjct: 685 tcctcttcttcctcctcatca 665
>gb|DQ483805.1| Gymnogyps californianus clone 228F microsatellite sequence Length = 1728 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 1245 cgcctcctcttcttcctcctc 1265
>gb|DQ483975.1| Gymnogyps californianus clone 141G microsatellite sequence Length = 723 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 ctcctcttcttcctcctcatc 291 ||||||||||||||||||||| Sbjct: 168 ctcctcttcttcctcctcatc 148
>emb|CT030096.1| Xenopus tropicalis finished cDNA, clone TGas070h02 Length = 2041 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 tcctcttcttcctcctcatca 292 ||||||||||||||||||||| Sbjct: 364 tcctcttcttcctcctcatca 344
>ref|XM_569301.1| Cryptococcus neoformans var. neoformans JEC21 small nucleolar ribonucleoprotein protein (CNB05580) partial mRNA Length = 2331 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 ctcctcttcttcctcctcatc 291 ||||||||||||||||||||| Sbjct: 903 ctcctcttcttcctcctcatc 883
>gb|AC109460.3| Homo sapiens chromosome 16 clone RP11-264B17, complete sequence Length = 163424 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 64566 cgcctcctcttcttcctcctc 64586
>gb|BC046643.1| Homo sapiens RNA binding motif protein 6, mRNA (cDNA clone MGC:49910 IMAGE:5753635), complete cds Length = 2137 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcat 290 ||||||||||||||||||||| Sbjct: 1350 cctcctcttcttcctcctcat 1330
>ref|XM_721492.1| Plasmodium yoelii yoelii str. 17XNL mature-parasite-infected erythrocyte surface antigen (PY06014) partial mRNA Length = 2286 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 tcctcttcttcctcctcatca 292 ||||||||||||||||||||| Sbjct: 1322 tcctcttcttcctcctcatca 1302
>gb|BC022454.2| Homo sapiens transient receptor potential cation channel, subfamily M, member 3, mRNA (cDNA clone IMAGE:4817012), partial cds Length = 3488 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 264 ccaacgcctcctcttcttcctcctc 288 ||||| ||||||||||||||||||| Sbjct: 3306 ccaacccctcctcttcttcctcctc 3282
>gb|BC033726.2| Homo sapiens coiled-coil domain containing 82, mRNA (cDNA clone MGC:44958 IMAGE:5001231), complete cds Length = 1883 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 tcctcttcttcctcctcatca 292 ||||||||||||||||||||| Sbjct: 860 tcctcttcttcctcctcatca 840
>gb|BC018663.2| Homo sapiens coiled-coil domain containing 82, mRNA (cDNA clone MGC:2462 IMAGE:2964737), complete cds Length = 2678 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 tcctcttcttcctcctcatca 292 ||||||||||||||||||||| Sbjct: 994 tcctcttcttcctcctcatca 974
>gb|BC012112.1| Homo sapiens cDNA clone IMAGE:4644574, containing frame-shift errors Length = 3539 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcat 290 ||||||||||||||||||||| Sbjct: 2790 cctcctcttcttcctcctcat 2770
>gb|BC030057.1| Homo sapiens RNA binding motif protein 6, mRNA (cDNA clone IMAGE:4765499), containing frame-shift errors Length = 1774 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcat 290 ||||||||||||||||||||| Sbjct: 1001 cctcctcttcttcctcctcat 981
>gb|BC052294.1| Homo sapiens CD19 molecule, mRNA (cDNA clone IMAGE:6301752), with apparent retained intron Length = 2329 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 29 cgcctcctcttcttcctcctc 49
>gb|BC006338.2| Homo sapiens CD19 molecule, mRNA (cDNA clone MGC:12802 IMAGE:4054919), complete cds Length = 1948 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 57 cgcctcctcttcttcctcctc 77
>emb|AL590484.10| Human DNA sequence from clone RP11-76E18 on chromosome 6 Contains the 5' end of a gene for a novel protein, complete sequence Length = 65240 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 264 ccaacgcctcctcttcttcctcctc 288 ||||| ||||||||||||||||||| Sbjct: 56896 ccaacccctcctcttcttcctcctc 56920
>emb|AL590613.6| Human DNA sequence from clone RP11-164G6 on chromosome 6 Contains part of the LAMA2 gene for laminin, alpha 2 (merosin, congenital muscular dystrophy) (LAMM), complete sequence Length = 91827 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 264 ccaacgcctcctcttcttcctcctc 288 ||||| ||||||||||||||||||| Sbjct: 21932 ccaacccctcctcttcttcctcctc 21908
>emb|AL450337.24| Human DNA sequence from clone RP11-51B10 on chromosome 10 Contains the 5' end of the PARD3 gene for par-3 partitioning defective 3 homolog (C.elegans), a novel gene, a pseudogene similar to part of synovial sarcoma translocation, chromosome 18 protein (SS18), a peroxiredoxin 2 (PRDX2) pseudogene and a CpG island, complete sequence Length = 173987 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 264 ccaacgcctcctcttcttcctcctc 288 ||||| ||||||||||||||||||| Sbjct: 136291 ccaacccctcctcttcttcctcctc 136315
>ref|XM_779262.1| PREDICTED: Strongylocentrotus purpuratus similar to ankyrin repeat domain 26 (LOC579129), partial mRNA Length = 3393 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 ctcctcttcttcctcctcatc 291 ||||||||||||||||||||| Sbjct: 393 ctcctcttcttcctcctcatc 373
>emb|AL161443.13| Human DNA sequence from clone RP11-169L18 on chromosome 9 Contains the 3' end of the JMJD2C gene for jumonji domain containing 2C, complete sequence Length = 140439 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 264 ccaacgcctcctcttcttcctcctc 288 ||||| ||||||||||||||||||| Sbjct: 90887 ccaacccctcctcttcttcctcctc 90911
>emb|AL159990.12| Human DNA sequence from clone RP11-141J10 on chromosome 9 Contains the 3' end of the TRPM3 gene for transient receptor potential cation channel subfamily M, member 3 (MLSN2, LTRPC3, FLJ11726) and two novel genes, complete sequence Length = 148833 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 264 ccaacgcctcctcttcttcctcctc 288 ||||| ||||||||||||||||||| Sbjct: 90184 ccaacccctcctcttcttcctcctc 90208
>ref|XM_784268.1| PREDICTED: Strongylocentrotus purpuratus similar to ankyrin repeat domain 26 (LOC584408), mRNA Length = 7137 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 ctcctcttcttcctcctcatc 291 ||||||||||||||||||||| Sbjct: 1572 ctcctcttcttcctcctcatc 1552
>gb|AC112917.3| Homo sapiens X BAC RP11-46C18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 134089 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 266 aacgcctcctcttcttcctcctcatcagc 294 |||||||||||||| |||||||| ||||| Sbjct: 70621 aacgcctcctcttcctcctcctcctcagc 70593
>gb|AC105729.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1607A12, complete sequence Length = 177327 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 272 tcctcttcttcctcctcatca 292 ||||||||||||||||||||| Sbjct: 172643 tcctcttcttcctcctcatca 172663
>ref|NM_203744.1| Xenopus tropicalis eukaryotic translation initiation factor 3 subunit 7 (eif3s7), mRNA Length = 1875 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 tcctcttcttcctcctcatca 292 ||||||||||||||||||||| Sbjct: 1736 tcctcttcttcctcctcatca 1716
>gb|BC007237.1| Homo sapiens myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6, mRNA (cDNA clone IMAGE:2906020), complete cds Length = 3850 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 123 cgcctcctcttcttcctcctc 143
>emb|AL450321.15| Mouse DNA sequence from clone RP23-232M10 on chromosome 13 Contains a novel gene, a non-POU domain containing octamer-binding protein (Nono) pseudogene, a Sin3-associated polypeptide 18 (Sap18) pseudogene, the 5' end of a novel gene and a CpG island, complete sequence Length = 209175 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 270 cctcctcttcttcctcctcat 290 ||||||||||||||||||||| Sbjct: 82109 cctcctcttcttcctcctcat 82129
>emb|AL590503.11| Mouse DNA sequence from clone RP23-128M23 on chromosome 13, complete sequence Length = 169547 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 260 tcctccaacgcctcctcttcttcctcctc 288 ||||||||| |||| |||||||||||||| Sbjct: 134218 tcctccaactcctcttcttcttcctcctc 134246
>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete sequence Length = 1632307 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 271 ctcctcttcttcctcctcatc 291 ||||||||||||||||||||| Sbjct: 1570214 ctcctcttcttcctcctcatc 1570234
>emb|CR857604.1| Pongo pygmaeus mRNA; cDNA DKFZp469B0815 (from clone DKFZp469B0815) Length = 4250 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 269 gcctcctcttcttcctcctca 289 ||||||||||||||||||||| Sbjct: 2793 gcctcctcttcttcctcctca 2773
>gb|AC139527.19| Botryllus schlosseri clone subsf-532h24, complete sequence Length = 35618 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 439 aatccgcttgtcaagatcagc 459 ||||||||||||||||||||| Sbjct: 10763 aatccgcttgtcaagatcagc 10783
>gb|AC104450.2| Homo sapiens chromosome 3 clone RP11-493K19, complete sequence Length = 217337 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 270 cctcctcttcttcctcctcat 290 ||||||||||||||||||||| Sbjct: 109804 cctcctcttcttcctcctcat 109824
>gb|AC079822.13| Homo sapiens 3 BAC RP11-413G22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181672 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 264 ccaacgcctcctcttcttcctcctcatcagcgt 296 ||||| ||| ||||||||||||||| ||||||| Sbjct: 75194 ccaaccccttctcttcttcctcctcctcagcgt 75226
>ref|NM_005777.1| Homo sapiens RNA binding motif protein 6 (RBM6), mRNA Length = 3639 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcat 290 ||||||||||||||||||||| Sbjct: 2894 cctcctcttcttcctcctcat 2874
>dbj|AK093836.1| Homo sapiens cDNA FLJ36517 fis, clone TRACH2002043, highly similar to Homo sapiens g16 protein (g16) mRNA Length = 2267 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcat 290 ||||||||||||||||||||| Sbjct: 1541 cctcctcttcttcctcctcat 1521
>emb|CR609047.1| full-length cDNA clone CS0DI059YF11 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 2638 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 tcctcttcttcctcctcatca 292 ||||||||||||||||||||| Sbjct: 990 tcctcttcttcctcctcatca 970
>gb|AC097369.2| Homo sapiens chromosome 3 clone RP11-328N12, complete sequence Length = 203773 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatcagc 294 ||||||||||||||||||| ||||| Sbjct: 34657 cctcctcttcttcctcctcctcagc 34633
>dbj|AK056790.1| Homo sapiens cDNA FLJ32228 fis, clone PLACE6004397, weakly similar to Takifugu rubripes retinitis pigmentosa GTPase regulator-like protein gene Length = 2034 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 tcctcttcttcctcctcatca 292 ||||||||||||||||||||| Sbjct: 1052 tcctcttcttcctcctcatca 1032
>gb|AC099562.2| Homo sapiens chromosome 1 clone RP11-213P13, complete sequence Length = 168767 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 264 ccaacgcctcctcttcttcctcctc 288 ||||| ||||||||||||||||||| Sbjct: 89643 ccaacccctcctcttcttcctcctc 89667
>gb|AC145591.5| Mus musculus BAC clone RP24-176N2 from chromosome 18, complete sequence Length = 167532 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 260 tcctccaacgcctcctcttcttcctcctc 288 ||||||| | ||||||||||||||||||| Sbjct: 32835 tcctccacctcctcctcttcttcctcctc 32863
>gb|AC095353.9| Homo sapiens Xp BAC RP11-615L18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 142000 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 cctcctcttcttcctcctcatcagc 294 ||||||||||||||||||| ||||| Sbjct: 130672 cctcctcttcttcctcctcctcagc 130696
>gb|AC007566.2| Homo sapiens BAC clone CTB-10G5 from 7q21-7q22, complete sequence Length = 149194 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 ctcctcttcttcctcctcatc 291 ||||||||||||||||||||| Sbjct: 58163 ctcctcttcttcctcctcatc 58143
>gb|AC164078.4| Mus musculus chromosome 3, clone RP23-123C15, complete sequence Length = 188095 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcat 290 ||||||||||||||||||||| Sbjct: 97505 cctcctcttcttcctcctcat 97485
>ref|XM_702131.1| PREDICTED: Danio rerio similar to Wu:fc27e05 protein, transcript variant 3 (LOC557254), mRNA Length = 2048 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 tcctcttcttcctcctcatca 292 ||||||||||||||||||||| Sbjct: 599 tcctcttcttcctcctcatca 579
>ref|XM_678662.1| PREDICTED: Danio rerio similar to Wu:fc27e05 protein, transcript variant 1 (LOC557254), mRNA Length = 2150 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 tcctcttcttcctcctcatca 292 ||||||||||||||||||||| Sbjct: 701 tcctcttcttcctcctcatca 681
>ref|XM_702130.1| PREDICTED: Danio rerio similar to Wu:fc27e05 protein, transcript variant 2 (LOC557254), mRNA Length = 2054 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 tcctcttcttcctcctcatca 292 ||||||||||||||||||||| Sbjct: 605 tcctcttcttcctcctcatca 585
>ref|XM_684758.1| PREDICTED: Danio rerio similar to Ryanodine receptor 3 (Brain-type ryanodine receptor) (RyR3) (RYR-3) (Brain ryanodine receptor-calcium release channel) (LOC561350), mRNA Length = 4575 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 265 caacgcctcctcttcttcctcctca 289 |||| |||||||||||||||||||| Sbjct: 2196 caactcctcctcttcttcctcctca 2172
>gb|AF091264.1|AF091264 Homo sapiens RNA binding motif protein 6 (RBM6) mRNA, complete cds Length = 3639 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcat 290 ||||||||||||||||||||| Sbjct: 2894 cctcctcttcttcctcctcat 2874
>ref|XM_571963.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7 Length = 2876 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 276 cttcttcctcctcatcagcgtcccc 300 ||||||||||||||||| ||||||| Sbjct: 261 cttcttcctcctcatcatcgtcccc 237
>gb|AC020892.7|AC020892 Homo sapiens chromosome 15 clone RP11-313P18 map 15q21.2, complete sequence Length = 186253 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 264 ccaacgcctcctcttcttcctcctc 288 ||||| ||||||||||||||||||| Sbjct: 17986 ccaacccctcctcttcttcctcctc 18010
>gb|AC023430.18| Homo sapiens chromosome 2 clone RP11-59L22, complete sequence Length = 161840 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcatcagc 294 ||||||||||||||||||| ||||| Sbjct: 32434 cctcctcttcttcctcctcctcagc 32410
>emb|BX827058.1|CNS0A39E Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB90ZE04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1325 Score = 42.1 bits (21), Expect = 1.9 Identities = 39/45 (86%) Strand = Plus / Minus Query: 451 aagatcagccctgtaagtctccatgtattcattagcgcttgcttc 495 |||||||||| ||| ||| ||||||||||| | ||| |||||||| Sbjct: 958 aagatcagccttgtgagtttccatgtattcctcagcacttgcttc 914
>gb|AY211288.1| Eleutherodactylus ibischi UTA A-55243 cellular myelocytomatosis (c-myc) gene, exons 2 and 3 and partial cds Length = 1262 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 ctcctcttcttcctcctcatc 291 ||||||||||||||||||||| Sbjct: 1010 ctcctcttcttcctcctcatc 990
>gb|AC154470.2| Mus musculus BAC clone RP23-193P13 from chromosome 13, complete sequence Length = 216294 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 353 gtttgtcctttggacttctcc 373 ||||||||||||||||||||| Sbjct: 110109 gtttgtcctttggacttctcc 110129
>dbj|AB207100.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: H104 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB207099.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: H102 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB207098.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: H101 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB207097.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: H95 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB207096.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: H94 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB207095.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: H93 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB207094.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: H92 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB207093.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: H91 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB207092.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: Pg-15 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB207091.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: Pg-14 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB207090.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: Pg-13 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB207089.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: Pg-9 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB207088.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: Pg-8 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB207087.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: Pg-7 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB207086.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: Pg-6 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB207085.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: Pg-5 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB207084.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: M10 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB207083.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: M9 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB207082.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: M8 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB207081.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: M7 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB207080.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: M6 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB207079.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: M5 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB207078.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: M4 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB207077.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: M3 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB207076.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: M2 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB207075.1| Burkholderia glumae rpoD gene for DNA-directed RNA polymerase subunit D, partial cds, isolate: M1 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>gb|AF245436.1|AF245436 Homo sapiens HT025 mRNA, complete cds Length = 2726 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 tcctcttcttcctcctcatca 292 ||||||||||||||||||||| Sbjct: 1047 tcctcttcttcctcctcatca 1027
>gb|AC026359.25| Homo sapiens 3 BAC RP11-462A6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 78848 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 270 cctcctcttcttcctcctcat 290 ||||||||||||||||||||| Sbjct: 29840 cctcctcttcttcctcctcat 29860
>gb|AC119797.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0083G16, complete sequence Length = 145590 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 272 tcctcttcttcctcctcatca 292 ||||||||||||||||||||| Sbjct: 81443 tcctcttcttcctcctcatca 81423
>gb|AC092960.3| Homo sapiens 3 BAC RP11-393B14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172507 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 cctcctcttcttcctcctcatcagc 294 ||||||||||||||||||| ||||| Sbjct: 85013 cctcctcttcttcctcctcctcagc 85037
>ref|XM_236210.3| PREDICTED: Rattus norvegicus similar to Poliovirus receptor-related 1 (LOC315595), mRNA Length = 1720 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 cctcctcttcttcctcctcat 290 ||||||||||||||||||||| Sbjct: 1496 cctcctcttcttcctcctcat 1476
>dbj|AB190707.1| Burkholderia glumae gene for DNA-directed RNA polymerase subunit D, partial cds, strain: MAFF 311192 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB190706.1| Burkholderia glumae gene for DNA-directed RNA polymerase subunit D, partial cds, strain: MAFF 302931 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240
>dbj|AB190705.1| Burkholderia glumae gene for DNA-directed RNA polymerase subunit D, partial cds, strain: MAFF 302928 Length = 829 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 cgcctcctcttcttcctcctc 288 ||||||||||||||||||||| Sbjct: 260 cgcctcctcttcttcctcctc 240 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,184,773 Number of Sequences: 3902068 Number of extensions: 5184773 Number of successful extensions: 178498 Number of sequences better than 10.0: 601 Number of HSP's better than 10.0 without gapping: 613 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 175730 Number of HSP's gapped (non-prelim): 2754 length of query: 548 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 525 effective length of database: 17,143,297,704 effective search space: 9000231294600 effective search space used: 9000231294600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)