>ENGB_BRUSU (P64067) Probable GTP-binding protein engB|
          Length = 241

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 83  KLDQID-SHQPRLLMEFHKLAYKSARIYAPIISLSS 187
           K+D+I  +  PRLL E HKL YK A  +  II+ SS
Sbjct: 186 KIDKIKPAGVPRLLEETHKLTYKRAACFPGIIATSS 221

>ENGB_BRUME (P64066) Probable GTP-binding protein engB|
          Length = 241

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 83  KLDQID-SHQPRLLMEFHKLAYKSARIYAPIISLSS 187
           K+D+I  +  PRLL E HKL YK A  +  II+ SS
Sbjct: 186 KIDKIKPAGVPRLLEETHKLTYKRAACFPGIIATSS 221

>POLG_PPVNA (P17766) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3125

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = +3

Query: 507  KWWINQARN*KTIPKSAAEASHETPTRSRLTN--NQRQHGKRRAAAQRNATGTG 662
            KWW+NQ      IP    E      TR    +  N+  HG  +    R A G+G
Sbjct: 1205 KWWMNQLETGNVIPHYRTEGHFLEFTRENAAHIANEVMHGSHQDILIRGAVGSG 1258

>RKPI_RHIME (Q52938) Capsular polysaccharide biosynthesis protein rkpI|
          Length = 538

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
 Frame = +2

Query: 23  HLYNGTFXMRHSYLPKFSTEKLDQIDS--HQPRLLMEFHKLAYKSARIYAPIISLSSVYT 196
           H Y+ TF +RH  +P    EKL  +D+  H+P     +   A  +AR+ A +        
Sbjct: 357 HPYDRTFFLRHKAMPLLGFEKLTMLDAFDHKPERDGLYVSDATLAARVLAEV-------- 408

Query: 197 *LISTAFGDKSHEQQSALFLAILRGRHSSME 289
                   +K  E++S  F       H   E
Sbjct: 409 --------EKLPEEESGFFFVASMANHGPWE 431

>HAIR_MOUSE (Q61645) Protein hairless|
          Length = 1182

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +1

Query: 475 PLASQTMLGIASGGSIKQGTEKRSPNPQRRHLTKHRRDRV*PTTSGSTGNGARR 636
           PLA   MLG+A GG ++Q  E   P       + H+RD       G TG G ++
Sbjct: 220 PLAESGMLGLAPGGHLQQACESEGP-------SLHQRD-------GETGAGRQQ 259

>POLG_PPVD (P13529) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral gen
          Length = 3141

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
 Frame = +3

Query: 507  KWWINQARN*KTIPKSAAEASHETPTRSRLTN--NQRQHGKRRAAAQRNATGTG 662
            KWW NQ      IP    E      TR    +  N+  HG  +    R A G+G
Sbjct: 1206 KWWTNQLETGNVIPHYRTEGHFLEFTRENAAHIANEVMHGSHQDILIRGAVGSG 1259

>POLG_PPVSK (Q84934) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3140

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
 Frame = +3

Query: 507  KWWINQARN*KTIPKSAAEASHETPTRSRLTN--NQRQHGKRRAAAQRNATGTG 662
            KWW NQ      IP    E      TR    +  N+  HG  +    R A G+G
Sbjct: 1205 KWWTNQLETGNVIPHYRTEGHFLEFTRENAAHIANEVMHGSHQDILIRGAVGSG 1258

>POLG_PPVRA (P17767) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3140

 Score = 30.0 bits (66), Expect = 7.5
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
 Frame = +3

Query: 507  KWWINQARN*KTIPKSAAEASHETPTRSRLTN--NQRQHGKRRAAAQRNATGTG 662
            KWW NQ      IP    E      TR    +  N+  HG  +    R A G+G
Sbjct: 1205 KWWTNQLETGNVIPHYRTEGHFLEFTRENAAHIANEVMHGSHQDILIRGAVGSG 1258

>ATP6_CHICK (P14092) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)|
          Length = 227

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 563 LRCGFGDRFSVPCLIDPPLAMPSMVCDA 480
           +   F D+FS PCL+  PL +PS++  A
Sbjct: 1   MNLSFFDQFSSPCLLGIPLILPSLLLPA 28


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,384,564
Number of Sequences: 219361
Number of extensions: 2145458
Number of successful extensions: 5094
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5092
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7366267610
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)