>SQV8_CAEEL (Q09363) Probable glucuronosyltransferase sqv-8 (EC 2.4.1.135)|
           (Vulval invagination protein sqv-8) (Squashed vulva
           protein 8)
          Length = 356

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +1

Query: 16  HVSAVYKYNKPFYKPCVAYLLSL-LIVQAXXXXXXXXXXNGYKRTSFLQSLGVHLF 180
           H +AV+K  +PF     A+ +++ L++             GY+ ++FL++LG+H +
Sbjct: 251 HFNAVWKPERPFPIDMAAFAVNISLVLSNANALFSFDVPRGYQESTFLENLGIHRY 306

>TGT_LACLA (Q9CJ54) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)|
           (tRNA-guanine transglycosylase) (Guanine insertion
           enzyme)
          Length = 382

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
 Frame = +2

Query: 8   DCYTCRPFTNTTNLFTNHVLPICSHFS--SCKHSILHY-------TAXAIMDTNVLLF 154
           DCYTC   TN T  +  H++     F    C +  LH+          AIMD N+L F
Sbjct: 310 DCYTC---TNYTRAYLRHLIKADETFGLRLCSYHNLHFLVNLMKDVRGAIMDDNLLEF 364

>TOP1_VACCV (P68698) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
           (Late protein H7)
          Length = 314

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -1

Query: 310 EHCDVP-RILE*FVHLQTWEPCCKPLISKKAETKERTFYFFLKPRINGRLNSEEKKYVCI 134
           +H  +P  + +  V+ QTWE     LI   +++K R  YF+ K  +  R    ++ +V +
Sbjct: 32  QHVKIPTHLTDVVVYEQTWEEALTRLIFVGSDSKGRRQYFYGKMHVQNRNAKRDRIFVRV 91

Query: 133 H 131
           +
Sbjct: 92  Y 92

>TOP1_VACCC (P68697) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
           (Late protein H6)
          Length = 314

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -1

Query: 310 EHCDVP-RILE*FVHLQTWEPCCKPLISKKAETKERTFYFFLKPRINGRLNSEEKKYVCI 134
           +H  +P  + +  V+ QTWE     LI   +++K R  YF+ K  +  R    ++ +V +
Sbjct: 32  QHVKIPTHLTDVVVYEQTWEEALTRLIFVGSDSKGRRQYFYGKMHVQNRNAKRDRIFVRV 91

Query: 133 H 131
           +
Sbjct: 92  Y 92

>TOP1_VACCA (Q76ZS7) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
          Length = 314

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -1

Query: 310 EHCDVP-RILE*FVHLQTWEPCCKPLISKKAETKERTFYFFLKPRINGRLNSEEKKYVCI 134
           +H  +P  + +  V+ QTWE     LI   +++K R  YF+ K  +  R    ++ +V +
Sbjct: 32  QHVKIPTHLTDVVVYEQTWEEALTRLIFVGSDSKGRRQYFYGKMHVQNRNAKRDRIFVRV 91

Query: 133 H 131
           +
Sbjct: 92  Y 92

>TOP1_VARV (P32989) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
          Length = 314

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -1

Query: 310 EHCDVP-RILE*FVHLQTWEPCCKPLISKKAETKERTFYFFLKPRINGRLNSEEKKYVCI 134
           +H  +P  + +  V+ QTWE     LI   +++K R  YF+ K  +  R    ++ +V +
Sbjct: 32  QHVKIPTHLTDVVVYGQTWEEALTRLIFVGSDSKGRRQYFYGKMHVQNRNAKRDRIFVRV 91

Query: 133 H 131
           +
Sbjct: 92  Y 92

>ZN234_HUMAN (Q14588) Zinc finger protein 234 (Zinc finger protein HZF4)|
          Length = 700

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 181 RINGRLNSEEKKYVCIHYGXCCVMKNGVLAR*EVRANRQHMVCKKVC 41
           RI+ R+++ EK Y C   G C +  +   A   +    +  VC KVC
Sbjct: 332 RIHQRVHTGEKPYKCEECGKCFIQPSQFQAHRRIHTGEKPYVC-KVC 377

>ZN343_HUMAN (Q6P1L6) Zinc finger protein 343|
          Length = 599

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 178 INGRLNSEEKKYVCIHYGXCCVMKNGVLAR*EVRANRQHMVCKK 47
           ++ R +S EK YVC   G     K+ +L      +  +H VC++
Sbjct: 538 VHERTHSGEKPYVCSECGRGFSRKSLLLVHQRTHSGEKHYVCRE 581



 Score = 27.3 bits (59), Expect = 9.6
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 178 INGRLNSEEKKYVCIHYGXCCVMKNGVLAR*EVRANRQHMVCKKVCCICKR 26
           I+ R +S EK YVC   G     K+ +L      +  +H VC++    C+R
Sbjct: 454 IHERTHSGEKPYVCGECGRGFSRKSLLLVHQRTHSGEKHYVCRE----CRR 500

>SQRD_MOUSE (Q9R112) Sulfide:quinone oxidoreductase, mitochondrial precursor|
           (EC 1.-.-.-)
          Length = 450

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 241 PLISKKAETKERTFYFFLKPRINGRLNSEEKKYVCIHYGXCCVMKN 104
           PL++  +  + R F  FL      RL +++   + +H G CC  KN
Sbjct: 3   PLVTVVSSPRARLFACFL------RLGTQQAGPLQLHTGACCTAKN 42

>TOP1_SFVKA (P16472) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
          Length = 314

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -1

Query: 310 EHCDVP-RILE*FVHLQTWEPCCKPLISKKAETKERTFYFFLKPRINGRLNSEEKKYVCI 134
           +H  +P  + +  V+ QT+E     LI    ++K R  YF+ K  +  R ++ +  ++ +
Sbjct: 32  KHVKIPSHLTDVIVYEQTYEQSLSRLIFVGLDSKGRRQYFYGKMHVQRRNSARDTIFIKV 91

Query: 133 H 131
           H
Sbjct: 92  H 92


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,602,484
Number of Sequences: 219361
Number of extensions: 811166
Number of successful extensions: 2080
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2080
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)