ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21i10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ310843.1|HVU310843 Hordeum vulgare partial CA4 gene for P-... 720 0.0
2gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome... 107 4e-20
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 107 4e-20
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 107 4e-20
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 98 4e-17
7emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb... 98 4e-17
8emb|X99972.1|BOCAATPAS B.oleracea BCA1 mRNA for Ca2+-ATPase 88 4e-14
9ref|NM_190089.1| Oryza sativa (japonica cultivar-group), predic... 86 1e-13
10emb|AJ310842.1|HVU310842 Hordeum vulgare partial CA3 gene for P-... 86 1e-13
11dbj|AK070064.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
12gb|AY059632.1| Medicago truncatula type IIB calcium ATPase (MCA1... 78 4e-11
13ref|NM_129719.2| Arabidopsis thaliana ACA4 (AUTO-INHIBITED CA(2+... 66 1e-07
14gb|AF200739.1|AF200739 Arabidopsis thaliana plasma membrane-type... 66 1e-07
15ref|NM_115593.2| Arabidopsis thaliana calcium-transporting ATPas... 64 5e-07
16dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
17dbj|AP003412.4| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
18dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
19gb|AC002510.3| Arabidopsis thaliana chromosome 2 clone T32G6 map... 54 5e-04
20gb|AF466149.1| Medicago truncatula type IIB calcium ATPase (MCA3... 54 5e-04
21gb|AC112160.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.008
22dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
23gb|AC161219.4| Mus musculus chromosome 7, clone RP23-83E16, comp... 46 0.12
24gb|AC161440.8| Mus musculus chromosome 7, clone RP23-309B10, com... 46 0.12
25emb|AL137080.2|ATF28O9 Arabidopsis thaliana DNA chromosome 3, BA... 44 0.49
26gb|AC160404.13| Mus musculus 10 BAC RP24-217L12 (Roswell Park Ca... 42 1.9
27gb|AC158926.4| Mus musculus chromosome 3, clone RP24-93J4, compl... 42 1.9
28emb|CR936847.6| Mouse DNA sequence from clone DN-393H17 on chrom... 42 1.9
29emb|AL596136.5| Mouse DNA sequence from clone RP23-83I13 on chro... 42 1.9
30gb|AC022796.5| Homo sapiens chromosome 11, clone RP11-277K23, co... 42 1.9
31gb|AC101979.13| Mus musculus chromosome 3, clone RP24-338A7, com... 42 1.9
32dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
33gb|AC012001.6| Homo sapiens BAC clone RP11-465G21 from 2, comple... 42 1.9
34gb|AC154314.2| Mus musculus BAC clone RP23-347J22 from chromosom... 40 7.6
35gb|AC132411.3| Mus musculus BAC clone RP23-352O24 from chromosom... 40 7.6
36gb|AC122909.2| Mus musculus BAC clone RP23-53K17 from 10, comple... 40 7.6
37ref|XM_720814.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 7.6
38gb|AY327545.1| Salmo salar interferon gene, exons 4, 5, and part... 40 7.6
39ref|XM_665807.1| Plasmodium berghei strain ANKA hypothetical pro... 40 7.6
40ref|XM_667951.1| Plasmodium berghei strain ANKA hypothetical pro... 40 7.6
41emb|AL162753.2|NMA2Z2491 Neisseria meningitidis serogroup A stra... 40 7.6
42emb|CR352243.7| Zebrafish DNA sequence from clone DKEYP-117H8 in... 40 7.6
43ref|XM_695686.1| PREDICTED: Danio rerio hypothetical protein LOC... 40 7.6
44gb|AE002098.2| Neisseria meningitidis MC58, complete genome 40 7.6
45gb|AC084439.1|AC084439 Caenorhabditis briggsae cosmid CB005A09, ... 40 7.6
46gb|AC135626.4| Homo sapiens chromosome 15, clone RP11-354B3, com... 40 7.6
47gb|AF190471.1|AF190471 Neisseria meningitidis CrgA (crgA) gene, ... 40 7.6
48emb|AL929237.17| Zebrafish DNA sequence from clone CH211-213I16 ... 40 7.6
49gb|AC140293.4| Mus musculus BAC clone RP24-328A10 from 13, compl... 40 7.6
50gb|AC144947.4| Mus musculus BAC clone RP23-319M19 from 1, comple... 40 7.6 
>emb|AJ310843.1|HVU310843 Hordeum vulgare partial CA4 gene for P-type ATPase
          Length = 1740

 Score =  720 bits (363), Expect = 0.0
 Identities = 376/379 (99%), Gaps = 1/379 (0%)
 Strand = Plus / Minus

                                                                        
Query: 185  ttatatgtcatcagggccgttggcaagcggcctgtaaccatgtggacttccagaaatctc 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1740 ttatatgtcatcagggccgttggcaagcggcctgtaaccatgtggacttccagaaatctc 1681

                                                                        
Query: 245  acccgattttaccggaatgcacttcaagatggctccaataatcaagctgatggatcctat 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1680 acccgattttaccggaatgcacttcaagatggctccaataatcaagctgatggatcctat 1621

                                                                        
Query: 305  accaacgctcaccaaccagaattgccagctgagtggaacagtgctcgcaaaagtgccgag 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1620 accaacgctcaccaaccagaattgccagctgagtggaacagtgctcgcaaaagtgccgag 1561

                                                                        
Query: 365  aaactcgatgatcaccacctggaataccaccgtcgcgcttattaccccaaggaagaccca 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1560 aaactcgatgatcaccacctggaataccaccgtcgcgcttattaccccaaggaagaccca 1501

                                                                        
Query: 425  attgccaatgagaccacggaaaatgtttatcttctccatttccctgctgttcacttcgtt 484
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1500 attgccaatgagaccgcggaaaatgtttatcttctccatttccctgctgttcacttcgtt 1441

                                                                        
Query: 485  gaatacctggcaaaacacgaaggagttgaatatgaaggtgttgagaacggtcgtggaatc 544
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1440 gaatacctggcaaaacacgaaggagttgaatatgagggtgttgagaacggtcgtggaatc 1381

                               
Query: 545  tggaccatttgatgttgag 563
            ||||||| |||||||||||
Sbjct: 1380 tggacca-ttgatgttgag 1363
to top
>gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0068G15, complete sequence
          Length = 146175

 Score =  107 bits (54), Expect = 4e-20
 Identities = 252/318 (79%)
 Strand = Plus / Minus

                                                                         
Query: 177   ttctccagttatatgtcatcagggccgttggcaagcggcctgtaaccatgtggacttcca 236
             |||| ||| ||||||||||||||||| |||||||| |||||||| |||| |||| || ||
Sbjct: 75682 ttcttcagctatatgtcatcagggccattggcaagtggcctgtatccatttggagttgca 75623

                                                                         
Query: 237   gaaatctcacccgattttaccggaatgcacttcaagatggctccaataatcaagctgatg 296
             ||  | ||||| ||    || || || |||||||||||| | |||| ||||| |||||||
Sbjct: 75622 gaggtttcacctgaaccaactggtatacacttcaagatgacaccaacaatcaggctgatg 75563

                                                                         
Query: 297   gatcctataccaacgctcaccaaccagaattgccagctgagtggaacagtgctcgcaaaa 356
             || || |  || ||||| | || |||   ||||||| |||| |||||||| || || |||
Sbjct: 75562 gagccaaggccgacgctgagcagccaatgttgccagttgagcggaacagtactggcgaaa 75503

                                                                         
Query: 357   gtgccgagaaactcgatgatcaccacctggaataccaccgtcgcgcttattaccccaagg 416
             ||||| |||||||| ||||||||||| || ||| | || || ||   ||| ||  ||| |
Sbjct: 75502 gtgccaagaaactctatgatcaccacttgaaatgctacggttgcagctatgactgcaatg 75443

                                                                         
Query: 417   aagacccaattgccaatgagaccacggaaaatgtttatcttctccatttccctgctgttc 476
             |||| ||||||||  |||| |||||||||||  || ||||||| |||||| |||||||| 
Sbjct: 75442 aagatccaattgctgatgataccacggaaaacattgatcttctgcatttctctgctgttt 75383

                               
Query: 477   acttcgttgaatacctgg 494
             | ||| ||||||||||||
Sbjct: 75382 atttcattgaatacctgg 75365



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 489   acctggcaaaacacgaaggagttgaa 514
             ||||| ||||||||||||||||||||
Sbjct: 75095 acctgacaaaacacgaaggagttgaa 75070
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  107 bits (54), Expect = 4e-20
 Identities = 252/318 (79%)
 Strand = Plus / Minus

                                                                           
Query: 177     ttctccagttatatgtcatcagggccgttggcaagcggcctgtaaccatgtggacttcca 236
               |||| ||| ||||||||||||||||| |||||||| |||||||| |||| |||| || ||
Sbjct: 1857852 ttcttcagctatatgtcatcagggccattggcaagtggcctgtatccatttggagttgca 1857793

                                                                           
Query: 237     gaaatctcacccgattttaccggaatgcacttcaagatggctccaataatcaagctgatg 296
               ||  | ||||| ||    || || || |||||||||||| | |||| ||||| |||||||
Sbjct: 1857792 gaggtttcacctgaaccaactggtatacacttcaagatgacaccaacaatcaggctgatg 1857733

                                                                           
Query: 297     gatcctataccaacgctcaccaaccagaattgccagctgagtggaacagtgctcgcaaaa 356
               || || |  || ||||| | || |||   ||||||| |||| |||||||| || || |||
Sbjct: 1857732 gagccaaggccgacgctgagcagccaatgttgccagttgagcggaacagtactggcgaaa 1857673

                                                                           
Query: 357     gtgccgagaaactcgatgatcaccacctggaataccaccgtcgcgcttattaccccaagg 416
               ||||| |||||||| ||||||||||| || ||| | || || ||   ||| ||  ||| |
Sbjct: 1857672 gtgccaagaaactctatgatcaccacttgaaatgctacggttgcagctatgactgcaatg 1857613

                                                                           
Query: 417     aagacccaattgccaatgagaccacggaaaatgtttatcttctccatttccctgctgttc 476
               |||| ||||||||  |||| |||||||||||  || ||||||| |||||| |||||||| 
Sbjct: 1857612 aagatccaattgctgatgataccacggaaaacattgatcttctgcatttctctgctgttt 1857553

                                 
Query: 477     acttcgttgaatacctgg 494
               | ||| ||||||||||||
Sbjct: 1857552 atttcattgaatacctgg 1857535



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 489     acctggcaaaacacgaaggagttgaa 514
               ||||| ||||||||||||||||||||
Sbjct: 1857265 acctgacaaaacacgaaggagttgaa 1857240
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  107 bits (54), Expect = 4e-20
 Identities = 252/318 (79%)
 Strand = Plus / Minus

                                                                           
Query: 177     ttctccagttatatgtcatcagggccgttggcaagcggcctgtaaccatgtggacttcca 236
               |||| ||| ||||||||||||||||| |||||||| |||||||| |||| |||| || ||
Sbjct: 1855573 ttcttcagctatatgtcatcagggccattggcaagtggcctgtatccatttggagttgca 1855514

                                                                           
Query: 237     gaaatctcacccgattttaccggaatgcacttcaagatggctccaataatcaagctgatg 296
               ||  | ||||| ||    || || || |||||||||||| | |||| ||||| |||||||
Sbjct: 1855513 gaggtttcacctgaaccaactggtatacacttcaagatgacaccaacaatcaggctgatg 1855454

                                                                           
Query: 297     gatcctataccaacgctcaccaaccagaattgccagctgagtggaacagtgctcgcaaaa 356
               || || |  || ||||| | || |||   ||||||| |||| |||||||| || || |||
Sbjct: 1855453 gagccaaggccgacgctgagcagccaatgttgccagttgagcggaacagtactggcgaaa 1855394

                                                                           
Query: 357     gtgccgagaaactcgatgatcaccacctggaataccaccgtcgcgcttattaccccaagg 416
               ||||| |||||||| ||||||||||| || ||| | || || ||   ||| ||  ||| |
Sbjct: 1855393 gtgccaagaaactctatgatcaccacttgaaatgctacggttgcagctatgactgcaatg 1855334

                                                                           
Query: 417     aagacccaattgccaatgagaccacggaaaatgtttatcttctccatttccctgctgttc 476
               |||| ||||||||  |||| |||||||||||  || ||||||| |||||| |||||||| 
Sbjct: 1855333 aagatccaattgctgatgataccacggaaaacattgatcttctgcatttctctgctgttt 1855274

                                 
Query: 477     acttcgttgaatacctgg 494
               | ||| ||||||||||||
Sbjct: 1855273 atttcattgaatacctgg 1855256



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 489     acctggcaaaacacgaaggagttgaa 514
               ||||| ||||||||||||||||||||
Sbjct: 1854986 acctgacaaaacacgaaggagttgaa 1854961
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 244/309 (78%)
 Strand = Plus / Minus

                                                                           
Query: 186     tatatgtcatcagggccgttggcaagcggcctgtaaccatgtggacttccagaaatctca 245
               ||||||||||||||||| |||||||| |||||||| |||| |||| || ||||  | |||
Sbjct: 1788582 tatatgtcatcagggccattggcaagtggcctgtatccatttggagttgcagaggtttca 1788523

                                                                           
Query: 246     cccgattttaccggaatgcacttcaagatggctccaataatcaagctgatggatcctata 305
               || ||    || || || |||||||||||| | |||| |||||  |||||||| || |  
Sbjct: 1788522 cctgaaccaactggtatacacttcaagatgacaccaacaatcagactgatggagccaagg 1788463

                                                                           
Query: 306     ccaacgctcaccaaccagaattgccagctgagtggaacagtgctcgcaaaagtgccgaga 365
               || ||||| | || |||   ||||||| ||||||||||||| || || |||||||| |||
Sbjct: 1788462 ccgacgctgagcagccaatgttgccagttgagtggaacagtactggcgaaagtgccaaga 1788403

                                                                           
Query: 366     aactcgatgatcaccacctggaataccaccgtcgcgcttattaccccaaggaagacccaa 425
               ||||| ||||||||||| || ||| | || || ||   ||| ||  ||| ||||| ||||
Sbjct: 1788402 aactctatgatcaccacttgaaatgctacggttgctgctatgactgcaatgaagatccaa 1788343

                                                                           
Query: 426     ttgccaatgagaccacggaaaatgtttatcttctccatttccctgctgttcacttcgttg 485
               ||||  ||||  ||||||||||  || ||||||| |||||| |||||||| | ||| |||
Sbjct: 1788342 ttgctgatgatgccacggaaaacattgatcttctgcatttctctgctgtttatttcattg 1788283

                        
Query: 486     aatacctgg 494
               |||||||||
Sbjct: 1788282 aatacctgg 1788274



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                            
Query: 489     acctggcaaaacacgaaggagttgaatat 517
               ||||| |||||||||||||||||||||||
Sbjct: 1788005 acctgacaaaacacgaaggagttgaatat 1787977
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 244/309 (78%)
 Strand = Plus / Minus

                                                                           
Query: 186     tatatgtcatcagggccgttggcaagcggcctgtaaccatgtggacttccagaaatctca 245
               ||||||||||||||||| |||||||| |||||||| |||| |||| || ||||  | |||
Sbjct: 1788560 tatatgtcatcagggccattggcaagtggcctgtatccatttggagttgcagaggtttca 1788501

                                                                           
Query: 246     cccgattttaccggaatgcacttcaagatggctccaataatcaagctgatggatcctata 305
               || ||    || || || |||||||||||| | |||| |||||  |||||||| || |  
Sbjct: 1788500 cctgaaccaactggtatacacttcaagatgacaccaacaatcagactgatggagccaagg 1788441

                                                                           
Query: 306     ccaacgctcaccaaccagaattgccagctgagtggaacagtgctcgcaaaagtgccgaga 365
               || ||||| | || |||   ||||||| ||||||||||||| || || |||||||| |||
Sbjct: 1788440 ccgacgctgagcagccaatgttgccagttgagtggaacagtactggcgaaagtgccaaga 1788381

                                                                           
Query: 366     aactcgatgatcaccacctggaataccaccgtcgcgcttattaccccaaggaagacccaa 425
               ||||| ||||||||||| || ||| | || || ||   ||| ||  ||| ||||| ||||
Sbjct: 1788380 aactctatgatcaccacttgaaatgctacggttgctgctatgactgcaatgaagatccaa 1788321

                                                                           
Query: 426     ttgccaatgagaccacggaaaatgtttatcttctccatttccctgctgttcacttcgttg 485
               ||||  ||||  ||||||||||  || ||||||| |||||| |||||||| | ||| |||
Sbjct: 1788320 ttgctgatgatgccacggaaaacattgatcttctgcatttctctgctgtttatttcattg 1788261

                        
Query: 486     aatacctgg 494
               |||||||||
Sbjct: 1788260 aatacctgg 1788252



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                            
Query: 489     acctggcaaaacacgaaggagttgaatat 517
               ||||| |||||||||||||||||||||||
Sbjct: 1787983 acctgacaaaacacgaaggagttgaatat 1787955
to top
>emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 132026

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 244/309 (78%)
 Strand = Plus / Plus

                                                                         
Query: 186   tatatgtcatcagggccgttggcaagcggcctgtaaccatgtggacttccagaaatctca 245
             ||||||||||||||||| |||||||| |||||||| |||| |||| || ||||  | |||
Sbjct: 51900 tatatgtcatcagggccattggcaagtggcctgtatccatttggagttgcagaggtttca 51959

                                                                         
Query: 246   cccgattttaccggaatgcacttcaagatggctccaataatcaagctgatggatcctata 305
             || ||    || || || |||||||||||| | |||| |||||  |||||||| || |  
Sbjct: 51960 cctgaaccaactggtatacacttcaagatgacaccaacaatcagactgatggagccaagg 52019

                                                                         
Query: 306   ccaacgctcaccaaccagaattgccagctgagtggaacagtgctcgcaaaagtgccgaga 365
             || ||||| | || |||   ||||||| ||||||||||||| || || |||||||| |||
Sbjct: 52020 ccgacgctgagcagccaatgttgccagttgagtggaacagtactggcgaaagtgccaaga 52079

                                                                         
Query: 366   aactcgatgatcaccacctggaataccaccgtcgcgcttattaccccaaggaagacccaa 425
             ||||| ||||||||||| || ||| | || || ||   ||| ||  ||| ||||| ||||
Sbjct: 52080 aactctatgatcaccacttgaaatgctacggttgctgctatgactgcaatgaagatccaa 52139

                                                                         
Query: 426   ttgccaatgagaccacggaaaatgtttatcttctccatttccctgctgttcacttcgttg 485
             ||||  ||||  ||||||||||  || ||||||| |||||| |||||||| | ||| |||
Sbjct: 52140 ttgctgatgatgccacggaaaacattgatcttctgcatttctctgctgtttatttcattg 52199

                      
Query: 486   aatacctgg 494
             |||||||||
Sbjct: 52200 aatacctgg 52208



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 489   acctggcaaaacacgaaggagttgaatat 517
             ||||| |||||||||||||||||||||||
Sbjct: 52477 acctgacaaaacacgaaggagttgaatat 52505
to top
>emb|X99972.1|BOCAATPAS B.oleracea BCA1 mRNA for Ca2+-ATPase
          Length = 3314

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                        
Query: 449  gtttatcttctccatttccctgctgttcacttcgttgaatacctggcaaaacacgaagga 508
            |||||||||||| || || | ||||||||| ||||| || ||||||||||| ||||||||
Sbjct: 2921 gtttatcttctctatctctcggctgttcacctcgttaaacacctggcaaaagacgaagga 2862

                                    
Query: 509  gttgaatatgaaggtgttgagaac 532
            |||||| |||| ||||||||||||
Sbjct: 2861 gttgaagatgatggtgttgagaac 2838
to top
>ref|NM_190089.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3132

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 76/87 (87%)
 Strand = Plus / Minus

                                                                        
Query: 443  gaaaatgtttatcttctccatttccctgctgttcacttcgttgaatacctggcaaaacac 502
            ||||| ||| ||||||||||| |||||||||||||| |||||||| |||||||| || ||
Sbjct: 2871 gaaaacgttgatcttctccatctccctgctgttcacctcgttgaaaacctggcagaagac 2812

                                       
Query: 503  gaaggagttgaatatgaaggtgttgag 529
             |||| |||||| | ||||||||||||
Sbjct: 2811 aaaggtgttgaagacgaaggtgttgag 2785
to top
>emb|AJ310842.1|HVU310842 Hordeum vulgare partial CA3 gene for P-type ATPase
          Length = 1740

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                        
Query: 453  atcttctccatttccctgctgttcacttcgttgaatacctggcaaaacacgaaggagttg 512
            ||||| ||||||||||||||||| | ||||||||| ||||||||||| ||||| ||||||
Sbjct: 1472 atcttttccatttccctgctgtttatttcgttgaaaacctggcaaaagacgaaagagttg 1413

                   
Query: 513  aatatga 519
            |||||||
Sbjct: 1412 aatatga 1406
to top
>dbj|AK070064.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041B03, full
            insert sequence
          Length = 3785

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 76/87 (87%)
 Strand = Plus / Minus

                                                                        
Query: 443  gaaaatgtttatcttctccatttccctgctgttcacttcgttgaatacctggcaaaacac 502
            ||||| ||| ||||||||||| |||||||||||||| |||||||| |||||||| || ||
Sbjct: 3204 gaaaacgttgatcttctccatctccctgctgttcacctcgttgaaaacctggcagaagac 3145

                                       
Query: 503  gaaggagttgaatatgaaggtgttgag 529
             |||| |||||| | ||||||||||||
Sbjct: 3144 aaaggtgttgaagacgaaggtgttgag 3118
to top
>gb|AY059632.1| Medicago truncatula type IIB calcium ATPase (MCA1) mRNA, complete cds
          Length = 3535

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 72/83 (86%)
 Strand = Plus / Minus

                                                                        
Query: 447  atgtttatcttctccatttccctgctgttcacttcgttgaatacctggcaaaacacgaag 506
            ||||||||||| || ||||| |||||||| |  || ||||||||||||||||| || |||
Sbjct: 3012 atgtttatcttttcaatttctctgctgtttatctcattgaatacctggcaaaatacaaag 2953

                                   
Query: 507  gagttgaatatgaaggtgttgag 529
            ||||||||||| || ||||||||
Sbjct: 2952 gagttgaatatcaaagtgttgag 2930
to top
>ref|NM_129719.2| Arabidopsis thaliana ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4);
            calcium-transporting ATPase/ calmodulin binding AT2G41560
            (ACA4) mRNA, complete cds
          Length = 3284

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                        
Query: 450  tttatcttctccatttccctgctgttcacttcgttgaatacctggcaaaacacgaaggag 509
            ||||||||||| ||||||| ||| || |  || ||||| ||||||||||| |||||||||
Sbjct: 2847 tttatcttctctatttcccggctattgatctcattgaacacctggcaaaagacgaaggag 2788

                                     
Query: 510  ttgaatatgaaggtgttgagaacgg 534
            ||||| ||||  ||||| |||||||
Sbjct: 2787 ttgaagatgactgtgttaagaacgg 2763
to top
>gb|AF200739.1|AF200739 Arabidopsis thaliana plasma membrane-type calcium ATPase isoform 4
            (ACA4) mRNA, complete cds
          Length = 3116

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                        
Query: 450  tttatcttctccatttccctgctgttcacttcgttgaatacctggcaaaacacgaaggag 509
            ||||||||||| ||||||| ||| || |  || ||||| ||||||||||| |||||||||
Sbjct: 2845 tttatcttctctatttcccggctattgatctcattgaacacctggcaaaagacgaaggag 2786

                                     
Query: 510  ttgaatatgaaggtgttgagaacgg 534
            ||||| ||||  ||||| |||||||
Sbjct: 2785 ttgaagatgactgtgttaagaacgg 2761
to top
>ref|NM_115593.2| Arabidopsis thaliana calcium-transporting ATPase/ calmodulin binding
            AT3G57330 mRNA, complete cds
          Length = 3256

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 86/104 (82%)
 Strand = Plus / Minus

                                                                        
Query: 450  tttatcttctccatttccctgctgttcacttcgttgaatacctggcaaaacacgaaggag 509
            ||||||||||| || || |||||||| ||||| || || ||||||||||| ||||| |||
Sbjct: 2819 tttatcttctctatctctctgctgtttacttcattaaacacctggcaaaagacgaaagag 2760

                                                        
Query: 510  ttgaatatgaaggtgttgagaacggtcgtggaatctggaccatt 553
            ||||| || |  |||||||||||  | || |||||||| |||||
Sbjct: 2759 ttgaagataattgtgttgagaacaattgttgaatctgggccatt 2716
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                  
Query: 443      gaaaatgtttatcttctccatttccctgctgttcacttcgttgaatacct 492
                ||||| ||| ||||||||||| |||||||||||||| |||||||| ||||
Sbjct: 41219107 gaaaacgttgatcttctccatctccctgctgttcacctcgttgaaaacct 41219058
to top
>dbj|AP003412.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1150F11
          Length = 130355

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                               
Query: 443   gaaaatgtttatcttctccatttccctgctgttcacttcgttgaatacct 492
             ||||| ||| ||||||||||| |||||||||||||| |||||||| ||||
Sbjct: 36022 gaaaacgttgatcttctccatctccctgctgttcacctcgttgaaaacct 35973
to top
>dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0504E02
          Length = 137468

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                
Query: 443    gaaaatgtttatcttctccatttccctgctgttcacttcgttgaatacct 492
              ||||| ||| ||||||||||| |||||||||||||| |||||||| ||||
Sbjct: 116162 gaaaacgttgatcttctccatctccctgctgttcacctcgttgaaaacct 116113
to top
>gb|AC002510.3| Arabidopsis thaliana chromosome 2 clone T32G6 map CIC11C08, complete
             sequence
          Length = 91979

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                            
Query: 488   tacctggcaaaacacgaaggagttgaatatgaaggtgttgagaacgg 534
             |||||||||||| |||||||||||||| ||||  ||||| |||||||
Sbjct: 33528 tacctggcaaaagacgaaggagttgaagatgactgtgttaagaacgg 33574
to top
>gb|AF466149.1| Medicago truncatula type IIB calcium ATPase (MCA3) mRNA, complete cds
          Length = 3653

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                        
Query: 447  atgtttatcttctccatttccctgctgttcacttcgttgaatacctggcaaaacacgaag 506
            ||||||||||| || || || |||||||| |  || || || ||||||||||| || |||
Sbjct: 3084 atgtttatcttttctatatctctgctgtttatctcattaaacacctggcaaaatacaaag 3025

                                   
Query: 507  gagttgaatatgaaggtgttgag 529
            ||||||||||| || ||||||||
Sbjct: 3024 gagttgaatatcaaagtgttgag 3002
to top
>gb|AC112160.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1579_G03,
             complete sequence
          Length = 121466

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 487   atacctggcaaaacacgaaggagttgaatatga 519
             ||||||||||||| ||||| |||||||||||||
Sbjct: 94084 atacctggcaaaagacgaaagagttgaatatga 94052
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 487      atacctggcaaaacacgaaggagttgaatatga 519
                ||||||||||||| ||||| |||||||||||||
Sbjct: 24207846 atacctggcaaaagacgaaagagttgaatatga 24207814
to top
>gb|AC161219.4| Mus musculus chromosome 7, clone RP23-83E16, complete sequence
          Length = 211735

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 404    tattaccccaaggaagacccaattgcc 430
              |||||||||||||||||| ||||||||
Sbjct: 119865 tattaccccaaggaagactcaattgcc 119891
to top
>gb|AC161440.8| Mus musculus chromosome 7, clone RP23-309B10, complete sequence
          Length = 181423

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 404    tattaccccaaggaagacccaattgcc 430
              |||||||||||||||||| ||||||||
Sbjct: 108980 tattaccccaaggaagactcaattgcc 108954
to top
>emb|AL137080.2|ATF28O9 Arabidopsis thaliana DNA chromosome 3, BAC clone F28O9
          Length = 85710

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 55/66 (83%)
 Strand = Plus / Plus

                                                                         
Query: 488   tacctggcaaaacacgaaggagttgaatatgaaggtgttgagaacggtcgtggaatctgg 547
             |||||||||||| ||||| |||||||| || |  |||||||||||  | || ||||||||
Sbjct: 51474 tacctggcaaaagacgaaagagttgaagataattgtgttgagaacaattgttgaatctgg 51533

                   
Query: 548   accatt 553
              |||||
Sbjct: 51534 gccatt 51539
to top
>gb|AC160404.13| Mus musculus 10 BAC RP24-217L12 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 153457

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 165   cctcaattactcttctccagt 185
             |||||||||||||||||||||
Sbjct: 87404 cctcaattactcttctccagt 87424
to top
>gb|AC158926.4| Mus musculus chromosome 3, clone RP24-93J4, complete sequence
          Length = 185247

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 442   ggaaaatgtttatcttctcca 462
             |||||||||||||||||||||
Sbjct: 39938 ggaaaatgtttatcttctcca 39958
to top
>emb|CR936847.6| Mouse DNA sequence from clone DN-393H17 on chromosome 11, complete
             sequence
          Length = 170807

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 459   tccatttccctgctgttcact 479
             |||||||||||||||||||||
Sbjct: 95129 tccatttccctgctgttcact 95109
to top
>emb|AL596136.5| Mouse DNA sequence from clone RP23-83I13 on chromosome 11 Contains the
              Rabep1 gene for rabaptin, RAB GTPase binding effector
              protein 1, a ribosomal protein 23a (Rpl23a) pseudogene, a
              ribosomal protein 23A (Rpl23a) pseudogene, the Nup88 gene
              for nucleoporin 88, four novel genes, the C1qbp gene for
              complement component 1 q subcomponent binding protein, the
              Dhx33 gene for DEAH (Asp-Glu-Ala-His) box polypeptide 33, a
               novel pseudogene, a CARD domain pseudogene and six CpG
              islands, complete sequence
          Length = 254116

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 459    tccatttccctgctgttcact 479
              |||||||||||||||||||||
Sbjct: 211440 tccatttccctgctgttcact 211420
to top
>gb|AC022796.5| Homo sapiens chromosome 11, clone RP11-277K23, complete sequence
          Length = 115454

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 267   ttcaagatggctccaataatc 287
             |||||||||||||||||||||
Sbjct: 77791 ttcaagatggctccaataatc 77771
to top
>gb|AC101979.13| Mus musculus chromosome 3, clone RP24-338A7, complete sequence
          Length = 161025

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 442   ggaaaatgtttatcttctcca 462
             |||||||||||||||||||||
Sbjct: 85594 ggaaaatgtttatcttctcca 85614
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 134      gccaaaaatagcaaatgcaac 154
                |||||||||||||||||||||
Sbjct: 20163526 gccaaaaatagcaaatgcaac 20163546
to top
>gb|AC012001.6| Homo sapiens BAC clone RP11-465G21 from 2, complete sequence
          Length = 151336

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 221    accatgtggacttccagaaat 241
              |||||||||||||||||||||
Sbjct: 129954 accatgtggacttccagaaat 129934
to top
>gb|AC154314.2| Mus musculus BAC clone RP23-347J22 from chromosome 13, complete
             sequence
          Length = 189556

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   aaaaatagcaaatgcaacct 156
             ||||||||||||||||||||
Sbjct: 29316 aaaaatagcaaatgcaacct 29297
to top
>gb|AC132411.3| Mus musculus BAC clone RP23-352O24 from chromosome 1, complete sequence
          Length = 181902

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 459   tccatttccctgctgttcac 478
             ||||||||||||||||||||
Sbjct: 34440 tccatttccctgctgttcac 34459
to top
>gb|AC122909.2| Mus musculus BAC clone RP23-53K17 from 10, complete sequence
          Length = 198537

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 448    tgtttatcttctccatttcc 467
              ||||||||||||||||||||
Sbjct: 135051 tgtttatcttctccatttcc 135070
to top
>ref|XM_720814.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05447)
             partial mRNA
          Length = 12711

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    aacaaatgcagcaccaaaaa 65
             ||||||||||||||||||||
Sbjct: 10445 aacaaatgcagcaccaaaaa 10464
to top
>gb|AY327545.1| Salmo salar interferon gene, exons 4, 5, and partial cds
          Length = 525

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 504 aaggagttgaatatgaaggt 523
           ||||||||||||||||||||
Sbjct: 30  aaggagttgaatatgaaggt 49
to top
>ref|XM_665807.1| Plasmodium berghei strain ANKA hypothetical protein
          (PB401832.00.0) partial mRNA
          Length = 716

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 46 aacaaatgcagcaccaaaaa 65
          ||||||||||||||||||||
Sbjct: 77 aacaaatgcagcaccaaaaa 96
to top
>ref|XM_667951.1| Plasmodium berghei strain ANKA hypothetical protein (PB105353.00.0)
           partial mRNA
          Length = 1427

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 46  aacaaatgcagcaccaaaaa 65
           ||||||||||||||||||||
Sbjct: 526 aacaaatgcagcaccaaaaa 545
to top
>emb|AL162753.2|NMA2Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment
              2/7
          Length = 349061

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 484    tgaatacctggcaaaacacg 503
              ||||||||||||||||||||
Sbjct: 233292 tgaatacctggcaaaacacg 233311
to top
>emb|CR352243.7| Zebrafish DNA sequence from clone DKEYP-117H8 in linkage group 20
             Contains the paics gene for phosphoribosylaminoimidazole
             carboxylase phosphoribosylaminoimidazole
             succinocarboxamide synthetase, the gene for a novel
             AMP-binding enzyme domain containing protein, the gene for
             a novel protein similar to vertebrate phosphoribosyl
             pyrophosphate amidotransferase (PPAT), the 3' end of the
             gene for a novel protein similar to cytochrome P450 family
             2 subfamily J, the 5' end of a novel gene and two novel
             genes, complete sequence
          Length = 121253

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 512   gaatatgaaggtgttgagaa 531
             ||||||||||||||||||||
Sbjct: 86314 gaatatgaaggtgttgagaa 86295
to top
>ref|XM_695686.1| PREDICTED: Danio rerio hypothetical protein LOC572032 (LOC572032),
           mRNA
          Length = 2899

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 512 gaatatgaaggtgttgagaa 531
           ||||||||||||||||||||
Sbjct: 996 gaatatgaaggtgttgagaa 977
to top
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 484     tgaatacctggcaaaacacg 503
               ||||||||||||||||||||
Sbjct: 1960309 tgaatacctggcaaaacacg 1960290
to top
>gb|AC084439.1|AC084439 Caenorhabditis briggsae cosmid CB005A09, complete sequence
          Length = 82884

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   aaattagcggctggcggtgc 127
             ||||||||||||||||||||
Sbjct: 74819 aaattagcggctggcggtgc 74800
to top
>gb|AC135626.4| Homo sapiens chromosome 15, clone RP11-354B3, complete sequence
          Length = 180684

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 444   aaaatgtttatcttctccat 463
             ||||||||||||||||||||
Sbjct: 53840 aaaatgtttatcttctccat 53859
to top
>gb|AF190471.1|AF190471 Neisseria meningitidis CrgA (crgA) gene, complete cds
          Length = 1140

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 484 tgaatacctggcaaaacacg 503
           ||||||||||||||||||||
Sbjct: 688 tgaatacctggcaaaacacg 707
to top
>emb|AL929237.17| Zebrafish DNA sequence from clone CH211-213I16 in linkage group 20,
             complete sequence
          Length = 205393

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 35    ttgacttcccaaacaaatgcagca 58
             ||||||| ||||||||||||||||
Sbjct: 76997 ttgacttaccaaacaaatgcagca 77020
to top
>gb|AC140293.4| Mus musculus BAC clone RP24-328A10 from 13, complete sequence
          Length = 188473

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 137    aaaaatagcaaatgcaacct 156
              ||||||||||||||||||||
Sbjct: 171402 aaaaatagcaaatgcaacct 171383
to top
>gb|AC144947.4| Mus musculus BAC clone RP23-319M19 from 1, complete sequence
          Length = 185575

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 459    tccatttccctgctgttcac 478
              ||||||||||||||||||||
Sbjct: 152868 tccatttccctgctgttcac 152887


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,675,251
Number of Sequences: 3902068
Number of extensions: 4675251
Number of successful extensions: 82695
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82390
Number of HSP's gapped (non-prelim): 305
length of query: 563
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 540
effective length of database: 17,143,297,704
effective search space: 9257380760160
effective search space used: 9257380760160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top