ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21h24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MTCD_TETTH (Q8WSW3) Cadmium metallothionein precursor (MT-Cd) (C... 28 5.5
2NICE1_HUMAN (Q9UGL9) Protein NICE-1 28 9.4

>MTCD_TETTH (Q8WSW3) Cadmium metallothionein precursor (MT-Cd) (Cd-MT)|
          Length = 162

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 103 PSVGCCASARSWSCCFSRTXRCXASPG 23
           P+ GCC  +++ +CC S T  C    G
Sbjct: 76  PNSGCCCVSKTNNCCKSDTKECCTGTG 102



 Score = 28.5 bits (62), Expect = 5.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 103 PSVGCCASARSWSCCFSRTXRCXASPG 23
           P+ GCC  +++ +CC S T  C    G
Sbjct: 20  PNSGCCCVSKTDNCCKSDTKECCTGTG 46



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>NICE1_HUMAN (Q9UGL9) Protein NICE-1|
          Length = 99

 Score = 27.7 bits (60), Expect = 9.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 94  GCCASARSWSCCFSRTXRCXASPG 23
           GCC S+ +  CCF R  R   S G
Sbjct: 51  GCCGSSSTSCCCFPRRRRRQRSSG 74


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.119    0.322 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,742,985
Number of Sequences: 219361
Number of extensions: 86915
Number of successful extensions: 252
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 80,573,946
effective HSP length: 11
effective length of database: 78,160,975
effective search space used: 1875863400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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