>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 0.32
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 65     cgaccagctccttgccgacgc 85
              |||||||||||||||||||||
Sbjct: 974993 cgaccagctccttgccgacgc 974973

>gb|AF389112.1|AF389112 Rhizobium sp. NGR234, cosmid pXB9, complete sequence
          Length = 35540

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 71   gctccttgccgacgcgcagcagccaacg 98
            ||||||||||| ||| ||||||||||||
Sbjct: 3684 gctccttgccggcgcccagcagccaacg 3711

>ref|NM_062850.2| Caenorhabditis elegans F13H8.5 (F13H8.5) mRNA, complete cds
          Length = 1808

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 57   aagcaacacgaccagctcct 76
            ||||||||||||||||||||
Sbjct: 1129 aagcaacacgaccagctcct 1148

>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 63      cacgaccagctccttgccgacgc 85
               |||||| ||||||||||||||||
Sbjct: 2888883 cacgacgagctccttgccgacgc 2888861

>gb|U23139.1| Caenorhabditis elegans cosmid F13H8, complete sequence
          Length = 37794

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 58  agcaacacgaccagctcct 76
           |||||||||||||||||||
Sbjct: 613 agcaacacgaccagctcct 595

>emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genome; segment 5/16
          Length = 349737

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 67     accagctccttgccgacgc 85
              |||||||||||||||||||
Sbjct: 199788 accagctccttgccgacgc 199806

>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 67      accagctccttgccgacgc 85
               |||||||||||||||||||
Sbjct: 3736512 accagctccttgccgacgc 3736530

>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 67      accagctccttgccgacgc 85
               |||||||||||||||||||
Sbjct: 1433745 accagctccttgccgacgc 1433727

>dbj|AB035325.1| Burkholderia sp. TH2 DNA, catechol ortho-cleavage genes, complete cds
          Length = 8891

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 65   cgaccagctccttgccgac 83
            |||||||||||||||||||
Sbjct: 6500 cgaccagctccttgccgac 6482

>gb|M26752.1|AVINIFVNFA A.vinelandii nitrogen fixation (vnfA) gene, complete cds
          Length = 2957

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 67   accagctccttgccgacgc 85
            |||||||||||||||||||
Sbjct: 1823 accagctccttgccgacgc 1805


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 394,665
Number of Sequences: 3902068
Number of extensions: 394665
Number of successful extensions: 23387
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23234
Number of HSP's gapped (non-prelim): 153
length of query: 109
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 88
effective length of database: 17,151,101,840
effective search space: 1509296961920
effective search space used: 1509296961920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)