ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd21h23 |
|---|---|
| Clone Library Name | barley_pub |
>MTCD_TETTH (Q8WSW3) Cadmium metallothionein precursor (MT-Cd) (Cd-MT)| Length = 162 Score = 33.5 bits (75), Expect = 0.15 Identities = 12/37 (32%), Positives = 18/37 (48%) Frame = -1 Query: 272 GIPTPPTAGQPSVGCCASARSWSCCFSRTSRCAASPG 162 G+ P P+ GCC +++ +CC S T C G Sbjct: 10 GVNAKPCCTDPNSGCCCVSKTDNCCKSDTKECCTGTG 46 Score = 33.1 bits (74), Expect = 0.19 Identities = 12/37 (32%), Positives = 18/37 (48%) Frame = -1 Query: 272 GIPTPPTAGQPSVGCCASARSWSCCFSRTSRCAASPG 162 G+ P P+ GCC +++ +CC S T C G Sbjct: 66 GVNAKPCCFDPNSGCCCVSKTNNCCKSDTKECCTGTG 102
>ADA22_HUMAN (Q9P0K1) ADAM 22 precursor (A disintegrin and metalloproteinase| domain 22) (Metalloproteinase-like, disintegrin-like, and cysteine-rich protein 2) (Metalloproteinase-disintegrin ADAM22-3) Length = 906 Score = 32.3 bits (72), Expect = 0.32 Identities = 13/40 (32%), Positives = 25/40 (62%) Frame = +1 Query: 97 AVGCIRLLVCQLGRCAASLCGMPGDAAHLDVREKQHDQLL 216 AV LL+C LG C + CG GDA+ +++ +++ ++ + Sbjct: 6 AVSVPFLLLCVLGTCPPARCGQAGDASLMELEKRKENRFV 45
>LCE2D_HUMAN (Q5TA82) Late cornified envelope protein 2D (Late envelope protein| 12) (Small proline-rich-like epidermal differentiation complex protein 1A) Length = 110 Score = 32.0 bits (71), Expect = 0.42 Identities = 16/45 (35%), Positives = 20/45 (44%) Frame = -1 Query: 266 PTPPTAGQPSVGCCASARSWSCCFSRTSRCAASPGIPHKLAAHRP 132 P P P+V C S SCC + C +S G L+ HRP Sbjct: 34 PQCPAPCSPAVSSCCGPSSGSCCGPSSGGCCSSGGGGCCLSHHRP 78
>LCE2A_HUMAN (Q5TA79) Late cornified envelope protein 2A (Late envelope protein| 9) Length = 106 Score = 31.2 bits (69), Expect = 0.72 Identities = 16/45 (35%), Positives = 19/45 (42%) Frame = -1 Query: 266 PTPPTAGQPSVGCCASARSWSCCFSRTSRCAASPGIPHKLAAHRP 132 P P P V C S CC S + C +S G L+ HRP Sbjct: 30 PQCPAPCPPPVSSCCGPSSGGCCGSSSGGCCSSGGGGCCLSHHRP 74 Score = 28.5 bits (62), Expect = 4.7 Identities = 16/44 (36%), Positives = 17/44 (38%) Frame = -1 Query: 266 PTPPTAGQPSVGCCASARSWSCCFSRTSRCAASPGIPHKLAAHR 135 P G S GCC S+ S CC S C S P HR Sbjct: 39 PVSSCCGPSSGGCCGSS-SGGCCSSGGGGCCLSHHRPRLFHRHR 81
>CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21| Length = 348 Score = 30.4 bits (67), Expect = 1.2 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%) Frame = -1 Query: 221 SARSWSCCFSRT-SRCAASPGIPHKLAAHRPSWHTSSRMHP 102 S+RS S SR+ SRCA+S + AHRP H+SSR++P Sbjct: 300 SSRSRSPSRSRSPSRCASSRS---RSPAHRPRRHSSSRVNP 337
>LCE2C_HUMAN (Q5TA81) Late cornified envelope protein 2C (Late envelope protein| 11) Length = 110 Score = 29.6 bits (65), Expect = 2.1 Identities = 15/45 (33%), Positives = 19/45 (42%) Frame = -1 Query: 266 PTPPTAGQPSVGCCASARSWSCCFSRTSRCAASPGIPHKLAAHRP 132 P P P+V C S SCC + C +S L+ HRP Sbjct: 34 PQCPAPCFPAVSSCCGPSSGSCCGPSSGGCCSSGAGGCSLSHHRP 78
>PCDAD_PANTR (Q5DRF1) Protocadherin alpha 13 precursor (PCDH-alpha13)| Length = 950 Score = 29.3 bits (64), Expect = 2.7 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 7/51 (13%) Frame = -1 Query: 260 PPTAG-----QPSVGCCASARSWSCCFSRTSRCAASPGIPHK--LAAHRPS 129 PPT G +P++ C ++A SWS R R + G PHK L A PS Sbjct: 726 PPTEGVCAPGKPTLVCSSAAGSWSYSQQRRPRVCSGEG-PHKTDLMAFSPS 775
>PCDAD_HUMAN (Q9Y5I0) Protocadherin alpha 13 precursor (PCDH-alpha13)| Length = 950 Score = 29.3 bits (64), Expect = 2.7 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 7/51 (13%) Frame = -1 Query: 260 PPTAG-----QPSVGCCASARSWSCCFSRTSRCAASPGIPHK--LAAHRPS 129 PPT G +P++ C ++A SWS R R + G PHK L A PS Sbjct: 726 PPTEGACAPGKPTLVCSSAAGSWSYSQQRRPRVCSGEG-PHKTDLMAFSPS 775
>DUSC_AZOVI (P96192) tRNA-dihydrouridine synthase C (EC 1.-.-.-)| Length = 309 Score = 29.3 bits (64), Expect = 2.7 Identities = 11/33 (33%), Positives = 20/33 (60%) Frame = -1 Query: 272 GIPTPPTAGQPSVGCCASARSWSCCFSRTSRCA 174 G P + + + GCC+++R +CC ++RCA Sbjct: 97 GCPAKTSTARGADGCCSTSR--NCCMPSSARCA 127
>TNR12_MOUSE (Q9CR75) Tumor necrosis factor receptor superfamily member 12A| precursor (Fibroblast growth factor-inducible immediate-early response protein 14) (FGF-inducible 14) (Fibroblast growth factor-regulated protein 2) (Tweak-receptor) (TweakR) Length = 129 Score = 28.9 bits (63), Expect = 3.6 Identities = 11/30 (36%), Positives = 14/30 (46%) Frame = -1 Query: 242 PSVGCCASARSWSCCFSRTSRCAASPGIPH 153 P C+S SWS + CA+ P PH Sbjct: 31 PGTSPCSSGSSWSADLDKCMDCASCPARPH 60
>PCDA3_PANTR (Q5DRE9) Protocadherin alpha 3 precursor (PCDH-alpha3)| Length = 950 Score = 28.9 bits (63), Expect = 3.6 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 8/77 (10%) Frame = -1 Query: 260 PPTAG-----QPSVGCCASARSWSCCFSRTSRCAASPGIPH-KLAAHRPSWHTS--SRMH 105 PPT G +P++ C ++ SWS R R + G+P L A PS SR Sbjct: 726 PPTEGACGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCPISRDR 785 Query: 104 PTARVLA*SISTRPQEP 54 + + +S +P++P Sbjct: 786 EEKQDVDVDLSAKPRQP 802
>PCDA3_HUMAN (Q9Y5H8) Protocadherin alpha 3 precursor (PCDH-alpha3)| Length = 950 Score = 28.9 bits (63), Expect = 3.6 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 8/77 (10%) Frame = -1 Query: 260 PPTAG-----QPSVGCCASARSWSCCFSRTSRCAASPGIPH-KLAAHRPSWHTS--SRMH 105 PPT G +P++ C ++ SWS R R + G+P L A PS SR Sbjct: 726 PPTEGDCGPGKPTLVCSSAVGSWSYSQQRQQRVCSGEGLPKTDLMAFSPSLPPCPISRDR 785 Query: 104 PTARVLA*SISTRPQEP 54 + + +S +P++P Sbjct: 786 EEKQDVDVDLSAKPRQP 802
>MT1_TETTH (Q8T6B3) Metallothionein-1 (MT-1)| Length = 107 Score = 28.9 bits (63), Expect = 3.6 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = -1 Query: 248 GQPSVGCCASARSWSCCFSRTSRCAAS 168 G + CC S CC S+T++C S Sbjct: 68 GDKAKACCTDPNSGCCCSSKTNKCCDS 94 Score = 28.1 bits (61), Expect = 6.1 Identities = 10/32 (31%), Positives = 14/32 (43%) Frame = -1 Query: 257 PTAGQPSVGCCASARSWSCCFSRTSRCAASPG 162 P P+ GCC + + +CC S C G Sbjct: 16 PCCTDPNSGCCCVSETNNCCKSDKKECCTGTG 47 Score = 27.7 bits (60), Expect = 8.0 Identities = 10/27 (37%), Positives = 13/27 (48%) Frame = -1 Query: 248 GQPSVGCCASARSWSCCFSRTSRCAAS 168 G+ + CC S CC S T+ C S Sbjct: 11 GENAKPCCTDPNSGCCCVSETNNCCKS 37
>MT1_TETPY (O97388) Metallothionein-1 precursor (MT-1) [Contains:| Metallothionein-2 (MT-2)] Length = 107 Score = 28.9 bits (63), Expect = 3.6 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = -1 Query: 248 GQPSVGCCASARSWSCCFSRTSRCAAS 168 G + CC S CC S+T++C S Sbjct: 68 GDKAKACCTDPNSGCCCSSKTNKCCDS 94 Score = 28.1 bits (61), Expect = 6.1 Identities = 10/32 (31%), Positives = 14/32 (43%) Frame = -1 Query: 257 PTAGQPSVGCCASARSWSCCFSRTSRCAASPG 162 P P+ GCC + + +CC S C G Sbjct: 16 PCCTDPNSGCCCVSETNNCCKSDKKECCTGTG 47 Score = 27.7 bits (60), Expect = 8.0 Identities = 10/27 (37%), Positives = 13/27 (48%) Frame = -1 Query: 248 GQPSVGCCASARSWSCCFSRTSRCAAS 168 G+ + CC S CC S T+ C S Sbjct: 11 GENAKPCCTDPNSGCCCVSETNNCCKS 37
>MT1_TETPI (P80394) Metallothionein-1 precursor (MT-1) [Contains:| Metallothionein-2 (MT-2)] Length = 107 Score = 28.9 bits (63), Expect = 3.6 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = -1 Query: 248 GQPSVGCCASARSWSCCFSRTSRCAAS 168 G + CC S CC S+T++C S Sbjct: 68 GDKAKACCTDPNSGCCCSSKTNKCCDS 94 Score = 28.1 bits (61), Expect = 6.1 Identities = 10/32 (31%), Positives = 14/32 (43%) Frame = -1 Query: 257 PTAGQPSVGCCASARSWSCCFSRTSRCAASPG 162 P P+ GCC + + +CC S C G Sbjct: 16 PCCTDPNSGCCCVSETNNCCKSDKKECCTGTG 47 Score = 27.7 bits (60), Expect = 8.0 Identities = 10/27 (37%), Positives = 13/27 (48%) Frame = -1 Query: 248 GQPSVGCCASARSWSCCFSRTSRCAAS 168 G+ + CC S CC S T+ C S Sbjct: 11 GENAKPCCTDPNSGCCCVSETNNCCKS 37
>NICE1_HUMAN (Q9UGL9) Protein NICE-1| Length = 99 Score = 28.1 bits (61), Expect = 6.1 Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 11/46 (23%) Frame = -1 Query: 266 PTPPTAGQPSV-----------GCCASARSWSCCFSRTSRCAASPG 162 PTP A S GCC S+ + CCF R R S G Sbjct: 29 PTPAPASSSSCCGSGRGCCGDSGCCGSSSTSCCCFPRRRRRQRSSG 74
>NRBF2_RAT (Q9QYK3) Nuclear receptor-binding factor 2 (NRBF-2)| Length = 287 Score = 27.7 bits (60), Expect = 8.0 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = -1 Query: 164 GIPHKLAAHRPSWHTSSRMHPTARVLA*SISTRPQEPQGAF 42 G+PH A+HRPS + + ++ S R E QG F Sbjct: 94 GVPHLQASHRPSEDSEGQSPLLSQTYIPSTEKRLPEEQGVF 134
>PCDA1_PANTR (Q5DRF5) Protocadherin alpha 1 precursor (PCDH-alpha1)| Length = 950 Score = 27.7 bits (60), Expect = 8.0 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 11/80 (13%) Frame = -1 Query: 260 PPTAG-----QPSVGCCASARSWSCCFSRTSRCAASPGIPH-KLAAH----RPSWHTSSR 111 PPT G +P++ C ++ SWS R R +S G P L A PS +TS R Sbjct: 726 PPTEGACVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSLNTSER 785 Query: 110 -MHPTARVLA*SISTRPQEP 54 P A + +S P++P Sbjct: 786 NEQPEANL---DLSGNPRQP 802
>PCDA1_HUMAN (Q9Y5I3) Protocadherin alpha 1 precursor (PCDH-alpha1)| Length = 950 Score = 27.7 bits (60), Expect = 8.0 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 11/80 (13%) Frame = -1 Query: 260 PPTAG-----QPSVGCCASARSWSCCFSRTSRCAASPGIPH-KLAAH----RPSWHTSSR 111 PPT G +P++ C ++ SWS R R +S G P L A PS +TS R Sbjct: 726 PPTEGAYVPGKPTLVCSSALGSWSNSQQRRQRVCSSEGPPKTDLMAFSPGLSPSLNTSER 785 Query: 110 -MHPTARVLA*SISTRPQEP 54 P A + +S P++P Sbjct: 786 NEQPEANL---DLSGNPRQP 802
>PRIA_LENED (Q01200) Protein priA precursor| Length = 258 Score = 24.3 bits (51), Expect(2) = 8.2 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 4/61 (6%) Frame = -1 Query: 266 PTPPTAGQPSVGCCASARSWS----CCFSRTSRCAASPGIPHKLAAHRPSWHTSSRMHPT 99 PTPP+ C + W+ CC + S P +AH S HTS PT Sbjct: 70 PTPPSGKS----CPPNGWYWNDEKTCCLPKWP---TSTPTPTPSSAHHTSTHTSPSSTPT 122 Query: 98 A 96 + Sbjct: 123 S 123 Score = 21.9 bits (45), Expect(2) = 8.2 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = -2 Query: 106 IQLLVC*LRASPLAPKSHRAPFLTPEK 26 I L+C +SP P S P TP K Sbjct: 136 ISSLLCCTPSSPSKPSSTPKPSATPNK 162 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,190,790 Number of Sequences: 219361 Number of extensions: 781255 Number of successful extensions: 2243 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2155 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2225 length of database: 80,573,946 effective HSP length: 66 effective length of database: 66,096,120 effective search space used: 1586306880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
