ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21h22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF523077.1| Acacia lycopodiifolia trnK gene, partial sequence... 44 0.38
2gb|AF523076.1| Acacia adoxa chloroplast trnK gene, intron sequen... 44 0.38
3gb|DQ371879.1| Acacia lycopodifolia voucher CANB 615616 trnK gen... 44 0.38
4gb|AC131678.4| Mus musculus BAC clone RP23-333L1 from chromosome... 42 1.5
5gb|AC091523.23| Mus musculus strain C57BL/6J clone rp23-77a8 map... 42 1.5
6gb|AC158930.3| Mus musculus chromosome 1, clone RP23-244J9, comp... 42 1.5
7gb|AC163270.5| Mus musculus chromosome 1, clone RP24-292B21, com... 42 1.5
8gb|AC101455.9| Mus musculus chromosome 1, clone RP23-185E17, com... 42 1.5
9gb|AC102367.35| Mus musculus chromosome 3, clone RP23-211J6, com... 42 1.5
10emb|BX005036.6| Mouse DNA sequence from clone RP23-185E17 on chr... 42 1.5
11emb|BX677675.9| Zebrafish DNA sequence from clone DKEYP-90G12 in... 40 6.0
12emb|AL391737.2|CNS06C8G chromosome I of strain GB-M1 of Encephal... 40 6.0
13gb|AC008872.6| Homo sapiens chromosome 5 clone CTD-2198D21, comp... 40 6.0
14gb|AC158658.4| Mus musculus 6 BAC RP23-400L4 (Roswell Park Cance... 40 6.0
15dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
16dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
17emb|AL928817.5| Zebrafish DNA sequence from clone CH211-244H4 in... 40 6.0

>gb|AF523077.1| Acacia lycopodiifolia trnK gene, partial sequence; and maturase-like
            protein gene, partial cds; chloroplast genes for
            chloroplast products
          Length = 2034

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 212  aaaatcatgtgaaaaagcttgataca 237
            |||||||| |||||||||||||||||
Sbjct: 1821 aaaatcatatgaaaaagcttgataca 1846



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>gb|AF523076.1| Acacia adoxa chloroplast trnK gene, intron sequence; and
            maturase-like sequence
          Length = 2443

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 212  aaaatcatgtgaaaaagcttgataca 237
            |||||||| |||||||||||||||||
Sbjct: 1807 aaaatcatatgaaaaagcttgataca 1832



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>gb|DQ371879.1| Acacia lycopodifolia voucher CANB 615616 trnK gene, partial sequence;
            chloroplast
          Length = 1981

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 212  aaaatcatgtgaaaaagcttgataca 237
            |||||||| |||||||||||||||||
Sbjct: 1768 aaaatcatatgaaaaagcttgataca 1793



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>gb|AC131678.4| Mus musculus BAC clone RP23-333L1 from chromosome 3, complete sequence
          Length = 203750

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 51    aacaatagtttacaaaatcaatata 75
             |||||||||| ||||||||||||||
Sbjct: 76891 aacaatagttaacaaaatcaatata 76867



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>gb|AC091523.23| Mus musculus strain C57BL/6J clone rp23-77a8 map 1, complete sequence
          Length = 235509

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 143    taaaaacctagagaacatagctctc 167
              |||||||||||| ||||||||||||
Sbjct: 172389 taaaaacctagaaaacatagctctc 172413



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>gb|AC158930.3| Mus musculus chromosome 1, clone RP23-244J9, complete sequence
          Length = 214509

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 143   taaaaacctagagaacatagctctc 167
             |||||||||||| ||||||||||||
Sbjct: 10877 taaaaacctagaaaacatagctctc 10901



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>gb|AC163270.5| Mus musculus chromosome 1, clone RP24-292B21, complete sequence
          Length = 154928

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 176   aagagtagttcattttcattt 196
             |||||||||||||||||||||
Sbjct: 99239 aagagtagttcattttcattt 99219



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>gb|AC101455.9| Mus musculus chromosome 1, clone RP23-185E17, complete sequence
          Length = 185594

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 176    aagagtagttcattttcattt 196
              |||||||||||||||||||||
Sbjct: 139078 aagagtagttcattttcattt 139098



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>gb|AC102367.35| Mus musculus chromosome 3, clone RP23-211J6, complete sequence
          Length = 185452

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 51    aacaatagtttacaaaatcaatata 75
             |||||||||| ||||||||||||||
Sbjct: 11901 aacaatagttaacaaaatcaatata 11925



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>emb|BX005036.6| Mouse DNA sequence from clone RP23-185E17 on chromosome 1, complete
              sequence
          Length = 185591

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 176    aagagtagttcattttcattt 196
              |||||||||||||||||||||
Sbjct: 139075 aagagtagttcattttcattt 139095



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>emb|BX677675.9| Zebrafish DNA sequence from clone DKEYP-90G12 in linkage group 2,
             complete sequence
          Length = 124301

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    catcaaagtgaaactagaga 113
             ||||||||||||||||||||
Sbjct: 31501 catcaaagtgaaactagaga 31520



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>emb|AL391737.2|CNS06C8G chromosome I of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 209982

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   aaaaataaaaacctagagaa 157
             ||||||||||||||||||||
Sbjct: 41464 aaaaataaaaacctagagaa 41445



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>gb|AC008872.6| Homo sapiens chromosome 5 clone CTD-2198D21, complete sequence
          Length = 128703

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 413  ccattcagtaaataccaggaacaa 436
            |||| |||||||||||||||||||
Sbjct: 9692 ccatgcagtaaataccaggaacaa 9715



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>gb|AC158658.4| Mus musculus 6 BAC RP23-400L4 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 197909

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    gtttacaaaatcaatatact 77
             ||||||||||||||||||||
Sbjct: 64339 gtttacaaaatcaatatact 64320



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 177      agagtagttcattttcattt 196
                ||||||||||||||||||||
Sbjct: 16985920 agagtagttcattttcattt 16985901



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>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0488D02
          Length = 154537

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 177    agagtagttcattttcattt 196
              ||||||||||||||||||||
Sbjct: 115733 agagtagttcattttcattt 115714



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>emb|AL928817.5| Zebrafish DNA sequence from clone CH211-244H4 in linkage group 22,
             complete sequence
          Length = 153594

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    gaaaatttattatttaaggg 33
             ||||||||||||||||||||
Sbjct: 15048 gaaaatttattatttaaggg 15067


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,829,343
Number of Sequences: 3902068
Number of extensions: 4829343
Number of successful extensions: 82537
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82482
Number of HSP's gapped (non-prelim): 55
length of query: 444
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 422
effective length of database: 17,147,199,772
effective search space: 7236118303784
effective search space used: 7236118303784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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