Clone Name | rbasd21h22 |
---|---|
Clone Library Name | barley_pub |
>gb|AF523077.1| Acacia lycopodiifolia trnK gene, partial sequence; and maturase-like protein gene, partial cds; chloroplast genes for chloroplast products Length = 2034 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 212 aaaatcatgtgaaaaagcttgataca 237 |||||||| ||||||||||||||||| Sbjct: 1821 aaaatcatatgaaaaagcttgataca 1846
>gb|AF523076.1| Acacia adoxa chloroplast trnK gene, intron sequence; and maturase-like sequence Length = 2443 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 212 aaaatcatgtgaaaaagcttgataca 237 |||||||| ||||||||||||||||| Sbjct: 1807 aaaatcatatgaaaaagcttgataca 1832
>gb|DQ371879.1| Acacia lycopodifolia voucher CANB 615616 trnK gene, partial sequence; chloroplast Length = 1981 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 212 aaaatcatgtgaaaaagcttgataca 237 |||||||| ||||||||||||||||| Sbjct: 1768 aaaatcatatgaaaaagcttgataca 1793
>gb|AC131678.4| Mus musculus BAC clone RP23-333L1 from chromosome 3, complete sequence Length = 203750 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 51 aacaatagtttacaaaatcaatata 75 |||||||||| |||||||||||||| Sbjct: 76891 aacaatagttaacaaaatcaatata 76867
>gb|AC091523.23| Mus musculus strain C57BL/6J clone rp23-77a8 map 1, complete sequence Length = 235509 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 taaaaacctagagaacatagctctc 167 |||||||||||| |||||||||||| Sbjct: 172389 taaaaacctagaaaacatagctctc 172413
>gb|AC158930.3| Mus musculus chromosome 1, clone RP23-244J9, complete sequence Length = 214509 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 143 taaaaacctagagaacatagctctc 167 |||||||||||| |||||||||||| Sbjct: 10877 taaaaacctagaaaacatagctctc 10901
>gb|AC163270.5| Mus musculus chromosome 1, clone RP24-292B21, complete sequence Length = 154928 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 176 aagagtagttcattttcattt 196 ||||||||||||||||||||| Sbjct: 99239 aagagtagttcattttcattt 99219
>gb|AC101455.9| Mus musculus chromosome 1, clone RP23-185E17, complete sequence Length = 185594 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 aagagtagttcattttcattt 196 ||||||||||||||||||||| Sbjct: 139078 aagagtagttcattttcattt 139098
>gb|AC102367.35| Mus musculus chromosome 3, clone RP23-211J6, complete sequence Length = 185452 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 51 aacaatagtttacaaaatcaatata 75 |||||||||| |||||||||||||| Sbjct: 11901 aacaatagttaacaaaatcaatata 11925
>emb|BX005036.6| Mouse DNA sequence from clone RP23-185E17 on chromosome 1, complete sequence Length = 185591 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 aagagtagttcattttcattt 196 ||||||||||||||||||||| Sbjct: 139075 aagagtagttcattttcattt 139095
>emb|BX677675.9| Zebrafish DNA sequence from clone DKEYP-90G12 in linkage group 2, complete sequence Length = 124301 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 catcaaagtgaaactagaga 113 |||||||||||||||||||| Sbjct: 31501 catcaaagtgaaactagaga 31520
>emb|AL391737.2|CNS06C8G chromosome I of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 209982 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 aaaaataaaaacctagagaa 157 |||||||||||||||||||| Sbjct: 41464 aaaaataaaaacctagagaa 41445
>gb|AC008872.6| Homo sapiens chromosome 5 clone CTD-2198D21, complete sequence Length = 128703 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 413 ccattcagtaaataccaggaacaa 436 |||| ||||||||||||||||||| Sbjct: 9692 ccatgcagtaaataccaggaacaa 9715
>gb|AC158658.4| Mus musculus 6 BAC RP23-400L4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 197909 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 gtttacaaaatcaatatact 77 |||||||||||||||||||| Sbjct: 64339 gtttacaaaatcaatatact 64320
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 agagtagttcattttcattt 196 |||||||||||||||||||| Sbjct: 16985920 agagtagttcattttcattt 16985901
>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0488D02 Length = 154537 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 agagtagttcattttcattt 196 |||||||||||||||||||| Sbjct: 115733 agagtagttcattttcattt 115714
>emb|AL928817.5| Zebrafish DNA sequence from clone CH211-244H4 in linkage group 22, complete sequence Length = 153594 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 gaaaatttattatttaaggg 33 |||||||||||||||||||| Sbjct: 15048 gaaaatttattatttaaggg 15067 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,829,343 Number of Sequences: 3902068 Number of extensions: 4829343 Number of successful extensions: 82537 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82482 Number of HSP's gapped (non-prelim): 55 length of query: 444 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 422 effective length of database: 17,147,199,772 effective search space: 7236118303784 effective search space used: 7236118303784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)