ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd21h16 |
|---|---|
| Clone Library Name | barley_pub |
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 34.7 bits (78), Expect = 0.18 Identities = 19/57 (33%), Positives = 24/57 (42%) Frame = -2 Query: 386 PAARSSSLKTRVRRSAMLPPRGTPPQTTGSXXXXXXXXXXXTSPTEATAEPGDDLQP 216 P A S SL +R + SA +PP G P Q+T S P +P QP Sbjct: 3300 PVASSISLASRTKTSAQVPPEGEPLQSTQSAQPAPSTQATQPIPPAPPCQPSQLSQP 3356
>AIRE_MOUSE (Q9Z0E3) Autoimmune regulator (Autoimmune polyendocrinopathy| candidiasis ectodermal dystrophy protein homolog) (APECED protein homolog) Length = 552 Score = 31.2 bits (69), Expect = 2.0 Identities = 21/52 (40%), Positives = 25/52 (48%) Frame = -2 Query: 452 FAKDVFINQERKLGASSRWTGPPAARSSSLKTRVRRSAMLPPRGTPPQTTGS 297 F KDV +NQ RK GP AA + +R A+ PR TPP T S Sbjct: 101 FPKDVDLNQSRK--GRKPLAGPKAAVLPP-RPPTKRKALEEPRATPPATLAS 149
>AKAP6_HUMAN (Q13023) A-kinase anchor protein 6 (Protein kinase A-anchoring| protein 6) (PRKA6) (A-kinase anchor protein 100 kDa) (AKAP 100) (mAKAP) Length = 2319 Score = 30.8 bits (68), Expect = 2.6 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = -1 Query: 369 LSEDPGATERHASSKGNPATNDWIPSADTVYQEAS 265 + E PG T +SS G TN PS++TV QE+S Sbjct: 315 VEEQPGLTLGVSSSSGEALTNAAQPSSETVQQESS 349
>POLG_HCVIN (Q913D4) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3010 Score = 30.0 bits (66), Expect = 4.5 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Frame = +2 Query: 260 LSDASWYTVSADGIQSFVAGFPLEEAWRS--VAPGSSESSNEPPAGLS 397 LSD SW TVS+DG V + +W + P +SE + P LS Sbjct: 2399 LSDGSWSTVSSDGGTEDVVCCSMSYSWTGALITPCASEEAKLPINALS 2446
>AT10A_MOUSE (O54827) Probable phospholipid-transporting ATPase VA (EC 3.6.3.1)| (P-locus fat-associated ATPase) Length = 1508 Score = 29.6 bits (65), Expect = 5.9 Identities = 17/38 (44%), Positives = 20/38 (52%) Frame = -2 Query: 410 ASSRWTGPPAARSSSLKTRVRRSAMLPPRGTPPQTTGS 297 ASS W P R +TR RS +LPP GT T G+ Sbjct: 12 ASSGWRRPRRRRWEG-RTRTVRSNLLPPLGTEDSTIGA 48
>YFGG_SCHPO (O13854) Hypothetical serine/threonine-rich protein C19G12.16c| precursor Length = 670 Score = 29.6 bits (65), Expect = 5.9 Identities = 19/65 (29%), Positives = 34/65 (52%) Frame = -2 Query: 491 NSWIYERRTTAKAFAKDVFINQERKLGASSRWTGPPAARSSSLKTRVRRSAMLPPRGTPP 312 NS IY T++ ++ DV ++ ++ T PP A S+S + + ++M+P + Sbjct: 159 NSTIYSSATSSFPYSTDVSVSTGT---STDIVTLPPPASSTSSFSTITNTSMIPSSSSFT 215 Query: 311 QTTGS 297 TTGS Sbjct: 216 TTTGS 220
>PHEB_CLOTE (Q899Q4) ACT domain protein pheB| Length = 152 Score = 29.3 bits (64), Expect = 7.7 Identities = 10/36 (27%), Positives = 24/36 (66%) Frame = +2 Query: 149 HEYAPFIFLIADLTGSHTHLIMLAVDHRPAQLSLLL 256 ++Y ++F +++L+ + +I + ++HRP LS +L Sbjct: 57 YKYKDYVFNVSELSSNQKVIISVTLNHRPGTLSKIL 92
>NRK1_SCHPO (Q9C0W1) Probable nicotinamide riboside kinase 1 (EC 2.7.1.-)| Length = 230 Score = 29.3 bits (64), Expect = 7.7 Identities = 12/43 (27%), Positives = 23/43 (53%) Frame = -3 Query: 532 GTVGGHSYFIVRGEILGFMKDEQLRKHLPRMFSLIKNESWGLH 404 G V GHS+ V G++ G + D++++ S+ N W ++ Sbjct: 181 GYVHGHSHLFVNGDVTGKLLDKRIQLSPSSKMSVRDNVQWAIN 223
>RAIN_MOUSE (Q3U0S6) Ras-interacting protein 1 (Rain)| Length = 961 Score = 28.9 bits (63), Expect = 10.0 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = -2 Query: 440 VFINQERKLGAS--SRWTGPPAARSSSLKTRVRRSAMLPPRGTPP 312 ++IN RK A RW + +SSS T R S LPP PP Sbjct: 23 LWINSPRKQLAKLGRRWPSAASVKSSSSDTGSRSSEPLPPPPPPP 67
>BOS1_CANGA (Q6FKA1) Vesicular transport protein BOS1| Length = 240 Score = 28.9 bits (63), Expect = 10.0 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = -1 Query: 399 VDRPAGGSFELSEDPGATERHASSKGNPATNDWIPSADTVYQEAS 265 +D GG +++ AT H S GN ++N +P D + +E S Sbjct: 112 LDAQTGGESVMNQRRTATNDHTSQPGNTSSNYGLPMYDGLQKEQS 156
>H110_CHICK (P08286) Histone H1.10 (Methylated DNA-binding protein 2-H1)| (MDBP-2-H1) Length = 219 Score = 28.9 bits (63), Expect = 10.0 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = -1 Query: 387 AGGSFELSEDPGATERHASSKGNPATNDWIPSADTVYQEASDKPNRS 247 A GSF LS+ PG + A K PA P+A A+ KP ++ Sbjct: 101 ASGSFRLSKKPGEVKEKAPRKRTPAAKPKKPAAKKP-ASAAKKPKKA 146
>POLG_HCVH9 (Q81754) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3010 Score = 28.9 bits (63), Expect = 10.0 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Frame = +2 Query: 260 LSDASWYTVSADGIQSFVAGFPLEEAWRS--VAPGSSESSNEPPAGLS 397 LSD SW TVS+DG V + +W + P ++E + P LS Sbjct: 2399 LSDGSWSTVSSDGGTEDVVCCSMSYSWTGALITPCAAEETKLPINALS 2446 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,154,616 Number of Sequences: 219361 Number of extensions: 1791143 Number of successful extensions: 4998 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4812 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4998 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
