>PERM_MOUSE (P11247) Myeloperoxidase precursor (EC 1.11.1.7) (MPO) [Contains:|
           Myeloperoxidase light chain; Myeloperoxidase heavy
           chain]
          Length = 718

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 189 PCSIRNRFAQEPCYLWNSCFWS--PELTNRHTRF 94
           PC + NR A+ PC+L      S  PELT+ HT F
Sbjct: 360 PCLLTNRSARIPCFLAGDMRSSEMPELTSMHTLF 393

>SRYB_DROME (P07665) Serendipity locus protein beta|
          Length = 356

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
 Frame = -1

Query: 342 PSHNAVGGPASQLPKRKPLSEEEIEAIMQGGVF*YCFPPSCTFSGAPISPMPCSIRNRFA 163
           P+   V   A + P+R+P  E+E E  M+  +    F  S      P   MP S    F 
Sbjct: 112 PAFKIVQATALKEPERQPGEEDECEEFMKEEMLDEEFQFS-----EPDDSMPSSEEEFFT 166

Query: 162 QE---PCYLWNSCFWSPELTNRHTR 97
           +    PC++    F S E+  RH +
Sbjct: 167 ETTEIPCHICGEMFSSQEVLERHIK 191

>SYMM_FUGRU (Q90YI3) Methionyl-tRNA synthetase, mitochondrial precursor (EC|
           6.1.1.10) (Methionine--tRNA ligase 2) (Mitochondrial
           methionine--tRNA ligase) (MtMetRS)
          Length = 590

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 36  HMFSVHHFWLVTCMQGIIQETGCGGW 113
           H  +V HFW V C +G+I +    GW
Sbjct: 139 HHRAVQHFWSVLCSKGLIYKGSYEGW 164

>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein|
           (WASP-interacting protein) (PRPL-2 protein)
          Length = 503

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
 Frame = -1

Query: 354 VPPAPSHNAVGGPASQLPKRKPL-SEEEIEAIMQGGVF*YCFPPSCTFSGAPISPMPC-S 181
           +PP P  +  G  +  LP    L S   +++   G       PP    +GAP  P P  S
Sbjct: 379 LPPPPPVSRNGSTSRALPATPQLPSRSGVDSPRSGPR--PPLPPDRPSAGAPPPPPPSTS 436

Query: 180 IRNRFAQEPCY-LWNSCFW 127
           IRN F   PC   W S F+
Sbjct: 437 IRNGFQDSPCEDEWESRFY 455

>YBJD_ECOLI (P75828) Hypothetical protein ybjD|
          Length = 552

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = +1

Query: 160 LCKTVTNAARHRAYWRSTKGAAGGEAISEDTALHDSFN----LFLREWFAL-GKL*SWPS 324
           +C+ V  ++R  A+     G +  +  S   + H  FN    LF R W  + G+  +W  
Sbjct: 336 VCRLVRESSRVAAWRLGPSGLSTED--SRRISFHIRFNRPSSLFARCWLLVEGETETWVI 393

Query: 325 NSIMRRCGWHI*SKAV 372
           N + R+CG H  ++ +
Sbjct: 394 NELARQCGHHFDAEGI 409

>PITX1_DROME (O18400) Pituitary homeobox 1 homolog (D-PTX1)|
          Length = 509

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +2

Query: 155 GSCAKRLRMLHGIGLIGAPLKVQLGGKQYQ---KTPPCMIASISSSESGLRL 301
           GS    L     +G +GAP         Y       PCM +S+SSS + LRL
Sbjct: 416 GSMGSSLSNTSNVGAVGAPCPYTTPANPYMYRSAAEPCMSSSMSSSIATLRL 467

>PERM_HUMAN (P05164) Myeloperoxidase precursor (EC 1.11.1.7) (MPO) [Contains:|
           89 kDa myeloperoxidase; 84 kDa myeloperoxidase;
           Myeloperoxidase light chain; Myeloperoxidase heavy
           chain]
          Length = 745

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 189 PCSIRNRFAQEPCYLWNSCFWS--PELTNRHT 100
           PC + NR A+ PC+L      S  PELT+ HT
Sbjct: 386 PCLLTNRSARIPCFLAGDTRSSEMPELTSMHT 417

>NEP2_NEPGR (Q766C2) Aspartic proteinase nepenthesin-2 precursor (EC 3.4.23.-)|
           (Nepenthesin-II)
          Length = 438

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = +2

Query: 185 HGIGLIG---APLKV--QLGGKQYQKTPPCMIASISSSESGLRLGSCEAGPPTAL*EGAG 349
           +G GLIG    PL +  QLG  Q+     CM +  SSS S L LGS  +G P    EG+ 
Sbjct: 215 NGAGLIGMGWGPLSLPSQLGVGQFSY---CMTSYGSSSPSTLALGSAASGVP----EGSP 267

Query: 350 GTS 358
            T+
Sbjct: 268 STT 270

>SYMM_NEUCR (Q9C2H9) Probable methionyl-tRNA synthetase, mitochondrial (EC|
           6.1.1.10) (Methionine--tRNA ligase) (MetRS)
          Length = 622

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 36  HMFSVHHFWLVTCMQGIIQETGCGGW 113
           H+ +V HFWL+   +G+I E    GW
Sbjct: 157 HVEAVKHFWLLLKEKGLIYEAKHEGW 182

>PERE_MOUSE (P49290) Eosinophil peroxidase precursor (EC 1.11.1.7) (EPO)|
           [Contains: Eosinophil peroxidase light chain; Eosinophil
           peroxidase heavy chain]
          Length = 716

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 189 PCSIRNRFAQEPCYLWNSCFWS--PELTNRHTRF 94
           PC + NR A+ PC+L      S  P+LT  HT F
Sbjct: 359 PCLLTNRSARIPCFLAGDTRSSETPKLTALHTLF 392

>BSL2_ARATH (Q9SJF0) Serine/threonine-protein phosphatase BSL2 (EC 3.1.3.16)|
           (BSU1-like protein 2)
          Length = 1088

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 185 HGIGLIGAPLKVQLGGK-QYQKTPPCMIASISSSESGLRL 301
           H + L+G    + +GG  + +  PPCM A+ S+   GL L
Sbjct: 261 HVMALVGQRYLMAIGGNDEGEGPPPCMYATASARSDGLLL 300

>YOS1_SCHPO (P87319) Hypothetical protein C21C3.01c in chromosome II|
          Length = 3011

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 171  RFAQEPCYLWNSCFWSPELTNRHTR 97
            + +   CYLW+S F+  E+ + H R
Sbjct: 2306 KLSSSDCYLWSSSFYIEEIGSTHVR 2330

>PLMN_MOUSE (P20918) Plasminogen precursor (EC 3.4.21.7) [Contains: Plasmin|
           heavy chain A; Activation peptide; Angiostatin; Plasmin
           heavy chain A, short form; Plasmin light chain B]
          Length = 812

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
 Frame = -1

Query: 240 YCFPPSCTFSGAPISPMPCSIRNRFAQ-----EPCYLWNSCF-WSPELTNRHTRFPELFP 79
           YC  P CT    P SP    ++ R               +C  WS +  +RH R PE FP
Sbjct: 256 YCDIPRCTTPPPPPSPTYQCLKGRGENYRGTVSVTVSGKTCQRWSEQTPHRHNRTPENFP 315

>PP2A_TOBAC (Q9XGH7) Serine/threonine-protein phosphatase PP2A catalytic|
           subunit (EC 3.1.3.16)
          Length = 312

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 354 VPPAPSHNAVGGPASQLPKRKPLSEEEIEAIMQ 256
           VP + SH  +    +QL + KPLSE+E+  + +
Sbjct: 4   VPSSASHGNLDEQIAQLMQCKPLSEQEVRGLCE 36

>COAT_GMDNV (Q90125) Coat protein VP1 (Structural protein VP1) [Contains: Coat|
           protein VP (Structural protein VP2); Coat protein VP3
           (Structural protein VP3); Coat protein VP4 (Structural
           protein VP4)]
          Length = 811

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 3/124 (2%)
 Frame = +2

Query: 14  GGAPTHTSHVQRSPFLVSH--MYAGNNSGNRVWRLVSSGDQKQEFHK*HGSCAKRLRMLH 187
           G  P H   V    FL ++  MY   N G   W  ++   Q+ +    +  C   +    
Sbjct: 574 GNYPHH--QVSSFTFLQNYYCMYQQTNQGTGGWPCLAEHLQQFDSKTVNNQCLIDVTYKP 631

Query: 188 GIGLIGAPLKVQLGGKQYQKTPPCMIASISSSESGLRL-GSCEAGPPTAL*EGAGGTSDL 364
            +GLI +PL  ++ G+      P +  +IS  ++ + + G+    PP A    A  T +L
Sbjct: 632 KMGLIKSPLNYKIIGQ------PTVKGTISVGDNLVNMRGAVVTNPPEATQNVAESTHNL 685

Query: 365 KR*F 376
            R F
Sbjct: 686 TRNF 689

>ANK2_HUMAN (Q01484) Ankyrin-2 (Brain ankyrin) (Ankyrin-B) (Ankyrin,|
            nonerythroid)
          Length = 3924

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = -1

Query: 318  PASQLPKRKPLSEEEIEAIMQGGVF*YCFPPSCTFSGAPISPMPCSIRNRFAQEP 154
            P  + P R  L    +E  M+ G+F   FP     +   +     S+R+R  ++P
Sbjct: 2426 PLKESPCRDSLESSPVEPKMKAGIFPSHFPLPAAVAKTELLTEVASVRSRLLRDP 2480

>ARGB_MORPR (Q9K4Z5) Acetylglutamate kinase (EC 2.7.2.8) (NAG kinase) (AGK)|
           (N-acetyl-L-glutamate 5-phosphotransferase)
          Length = 264

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +2

Query: 263 IASISSSESGL-RLGSCEAGPPTAL 334
           IA+++ S +GL  +G CEAG PT L
Sbjct: 115 IATVTQSTAGLGAVGECEAGDPTLL 139

>UN119_DROME (Q9XYQ2) Protein unc-119 homolog (DmUNC-119)|
          Length = 265

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = +2

Query: 191 IGLIGAPLK-VQLGGKQYQKTPPCMIASISSSESGLRLGSCEAGPPTAL*EGAGGTSDLK 367
           + ++G  L  VQ  G     T     A  SSS SG+       G   A   GAG + D K
Sbjct: 1   MSVVGKQLNPVQSSGAGAVTTSSSAAAGSSSSNSGVEANGGSGGSSGAAAAGAGASGDAK 60

Query: 368 R 370
           R
Sbjct: 61  R 61

>HFC3_HAEIN (P45998) Outer membrane usher protein hifC precursor|
          Length = 837

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 19/78 (24%), Positives = 34/78 (43%)
 Frame = +2

Query: 11  QGGAPTHTSHVQRSPFLVSHMYAGNNSGNRVWRLVSSGDQKQEFHK*HGSCAKRLRMLHG 190
           Q G   +   V   PF+++ +YA   SG+    +  S  + + F     + A  +R+ H 
Sbjct: 299 QNGYTIYQITVPAGPFVINDLYASGYSGDLTVEIQESDGKVRSFIVPFSNLAPLMRVGH- 357

Query: 191 IGLIGAPLKVQLGGKQYQ 244
                  L+ QL G +Y+
Sbjct: 358 -------LRYQLAGGRYR 368

>HFC2_HAEIN (P45997) Outer membrane usher protein hifC precursor|
          Length = 837

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 19/78 (24%), Positives = 34/78 (43%)
 Frame = +2

Query: 11  QGGAPTHTSHVQRSPFLVSHMYAGNNSGNRVWRLVSSGDQKQEFHK*HGSCAKRLRMLHG 190
           Q G   +   V   PF+++ +YA   SG+    +  S  + + F     + A  +R+ H 
Sbjct: 299 QNGYTIYQITVPAGPFVINDLYASGYSGDLTVEIQESDGKVRSFIVPFSNLAPLMRVGH- 357

Query: 191 IGLIGAPLKVQLGGKQYQ 244
                  L+ QL G +Y+
Sbjct: 358 -------LRYQLAGGRYR 368

>HFC1_HAEIN (P33397) Outer membrane usher protein hifC precursor|
          Length = 837

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 19/78 (24%), Positives = 34/78 (43%)
 Frame = +2

Query: 11  QGGAPTHTSHVQRSPFLVSHMYAGNNSGNRVWRLVSSGDQKQEFHK*HGSCAKRLRMLHG 190
           Q G   +   V   PF+++ +YA   SG+    +  S  + + F     + A  +R+ H 
Sbjct: 299 QNGYTIYQITVPAGPFVINDLYASGYSGDLTVEIQESDGKVRSFIVPFSNLAPLMRVGH- 357

Query: 191 IGLIGAPLKVQLGGKQYQ 244
                  L+ QL G +Y+
Sbjct: 358 -------LRYQLAGGRYR 368


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,942,049
Number of Sequences: 219361
Number of extensions: 1446900
Number of successful extensions: 3843
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3841
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)