ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK104077.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 5e-28
2dbj|AK073116.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 5e-28
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 109 7e-21
4dbj|AP005450.3| Oryza sativa (japonica cultivar-group) genomic D... 109 7e-21
5dbj|AP004749.2| Oryza sativa (japonica cultivar-group) genomic D... 109 7e-21
6gb|AY105583.1| Zea mays PCO062823 mRNA sequence 88 2e-14
7gb|AY105657.1| Zea mays PCO062824 mRNA sequence 72 1e-09
8dbj|AP006125.1| Lotus japonicus genomic DNA, chromosome 2, clone... 42 1.3
9emb|CR318607.7| Zebrafish DNA sequence from clone CH211-237H22 i... 40 5.1
10gb|AC097357.2| Homo sapiens chromosome 3 clone RP11-137N22, comp... 40 5.1
11gb|AC098480.2| Homo sapiens chromosome 3 clone RP11-149J4, compl... 40 5.1
12gb|AC153514.8| Mus musculus 10 BAC RP23-406O24 (Roswell Park Can... 40 5.1 
>dbj|AK104077.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-D06, full
           insert sequence
          Length = 600

 Score =  133 bits (67), Expect = 5e-28
 Identities = 121/139 (87%)
 Strand = Plus / Minus

                                                                       
Query: 235 gcaatatcagaagacaccgccttgcatgatagcttcaatctcttcctcagagagtggttt 294
           |||||||||| ||| ||| |||||||||||||| ||||| |||||||| || ||||| ||
Sbjct: 366 gcaatatcagtagataccaccttgcatgatagcctcaatttcttcctctgacagtggctt 307

                                                                       
Query: 295 gcgcttgggaagttgtgaagctggccctccaacagcattatgagaaggtgcgggtggcac 354
           ||| || |||||  ||||||||||||||||||||||  ||| |||||||| ||  |||||
Sbjct: 306 gcgtttaggaaggagtgaagctggccctccaacagccgtataagaaggtggggaaggcac 247

                              
Query: 355 atctgatctaaagcggtaa 373
           |||||||||||||||||||
Sbjct: 246 atctgatctaaagcggtaa 228
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>dbj|AK073116.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033020J17, full
           insert sequence
          Length = 609

 Score =  133 bits (67), Expect = 5e-28
 Identities = 121/139 (87%)
 Strand = Plus / Minus

                                                                       
Query: 235 gcaatatcagaagacaccgccttgcatgatagcttcaatctcttcctcagagagtggttt 294
           |||||||||| ||| ||| |||||||||||||| ||||| |||||||| || ||||| ||
Sbjct: 393 gcaatatcagtagataccaccttgcatgatagcctcaatttcttcctctgacagtggctt 334

                                                                       
Query: 295 gcgcttgggaagttgtgaagctggccctccaacagcattatgagaaggtgcgggtggcac 354
           ||| || |||||  ||||||||||||||||||||||  ||| |||||||| ||  |||||
Sbjct: 333 gcgtttaggaaggagtgaagctggccctccaacagccgtataagaaggtggggaaggcac 274

                              
Query: 355 atctgatctaaagcggtaa 373
           |||||||||||||||||||
Sbjct: 273 atctgatctaaagcggtaa 255
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  109 bits (55), Expect = 7e-21
 Identities = 100/115 (86%)
 Strand = Plus / Minus

                                                                            
Query: 259      catgatagcttcaatctcttcctcagagagtggtttgcgcttgggaagttgtgaagctgg 318
                ||||||||| ||||| |||||||| || ||||| ||||| || |||||  ||||||||||
Sbjct: 19385282 catgatagcctcaatttcttcctctgacagtggcttgcgtttaggaaggagtgaagctgg 19385223

                                                                       
Query: 319      ccctccaacagcattatgagaaggtgcgggtggcacatctgatctaaagcggtaa 373
                ||||||||||||  ||| |||||||| ||  ||||||||||||||||||||||||
Sbjct: 19385222 ccctccaacagccgtataagaaggtggggaaggcacatctgatctaaagcggtaa 19385168
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>dbj|AP005450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0438E12
          Length = 146851

 Score =  109 bits (55), Expect = 7e-21
 Identities = 100/115 (86%)
 Strand = Plus / Minus

                                                                         
Query: 259   catgatagcttcaatctcttcctcagagagtggtttgcgcttgggaagttgtgaagctgg 318
             ||||||||| ||||| |||||||| || ||||| ||||| || |||||  ||||||||||
Sbjct: 90055 catgatagcctcaatttcttcctctgacagtggcttgcgtttaggaaggagtgaagctgg 89996

                                                                    
Query: 319   ccctccaacagcattatgagaaggtgcgggtggcacatctgatctaaagcggtaa 373
             ||||||||||||  ||| |||||||| ||  ||||||||||||||||||||||||
Sbjct: 89995 ccctccaacagccgtataagaaggtggggaaggcacatctgatctaaagcggtaa 89941
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>dbj|AP004749.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0410C01
          Length = 138424

 Score =  109 bits (55), Expect = 7e-21
 Identities = 100/115 (86%)
 Strand = Plus / Minus

                                                                        
Query: 259  catgatagcttcaatctcttcctcagagagtggtttgcgcttgggaagttgtgaagctgg 318
            ||||||||| ||||| |||||||| || ||||| ||||| || |||||  ||||||||||
Sbjct: 3691 catgatagcctcaatttcttcctctgacagtggcttgcgtttaggaaggagtgaagctgg 3632

                                                                   
Query: 319  ccctccaacagcattatgagaaggtgcgggtggcacatctgatctaaagcggtaa 373
            ||||||||||||  ||| |||||||| ||  ||||||||||||||||||||||||
Sbjct: 3631 ccctccaacagccgtataagaaggtggggaaggcacatctgatctaaagcggtaa 3577
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>gb|AY105583.1| Zea mays PCO062823 mRNA sequence
          Length = 567

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 98/116 (84%)
 Strand = Plus / Minus

                                                                       
Query: 258 gcatgatagcttcaatctcttcctcagagagtggtttgcgcttgggaagttgtgaagctg 317
           |||| ||||| ||||||||||| ||||  || ||||||||||| |||||  |||||||||
Sbjct: 421 gcataatagcctcaatctcttcttcagtcaggggtttgcgcttaggaaggagtgaagctg 362

                                                                   
Query: 318 gccctccaacagcattatgagaaggtgcgggtggcacatctgatctaaagcggtaa 373
           | ||||| || ||| |||||||||||| |   |||||||| |||||||||||||||
Sbjct: 361 gacctcctacggcagtatgagaaggtgggcaaggcacatcagatctaaagcggtaa 306
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>gb|AY105657.1| Zea mays PCO062824 mRNA sequence
          Length = 817

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 96/116 (82%)
 Strand = Plus / Minus

                                                                       
Query: 258 gcatgatagcttcaatctcttcctcagagagtggtttgcgcttgggaagttgtgaagctg 317
           |||| ||||| ||||||||||| ||||  || ||||| ||||| |||||  |||||||| 
Sbjct: 518 gcataatagcctcaatctcttcttcagtcagaggtttacgcttaggaaggagtgaagctt 459

                                                                   
Query: 318 gccctccaacagcattatgagaaggtgcgggtggcacatctgatctaaagcggtaa 373
           | ||||| |||||| |||| || |||| ||  ||||||||||| ||||||||||||
Sbjct: 458 gacctcctacagcagtatgcgacggtggggaaggcacatctgaactaaagcggtaa 403
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>dbj|AP006125.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT43I02, TM0210a,
             complete sequence
          Length = 55211

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 150   aacatggctcttgtgcaaaac 170
             |||||||||||||||||||||
Sbjct: 35530 aacatggctcttgtgcaaaac 35550
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>emb|CR318607.7| Zebrafish DNA sequence from clone CH211-237H22 in linkage group 14,
             complete sequence
          Length = 111412

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   cttgtgcaaaacggttacga 178
             ||||||||||||||||||||
Sbjct: 26631 cttgtgcaaaacggttacga 26650
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>gb|AC097357.2| Homo sapiens chromosome 3 clone RP11-137N22, complete sequence
          Length = 162277

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    catttttggttagtcacatg 73
             ||||||||||||||||||||
Sbjct: 53018 catttttggttagtcacatg 52999
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>gb|AC098480.2| Homo sapiens chromosome 3 clone RP11-149J4, complete sequence
          Length = 188681

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     catttttggttagtcacatg 73
              ||||||||||||||||||||
Sbjct: 171348 catttttggttagtcacatg 171329
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>gb|AC153514.8| Mus musculus 10 BAC RP23-406O24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 189633

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 268    ttcaatctcttcctcagaga 287
              ||||||||||||||||||||
Sbjct: 120970 ttcaatctcttcctcagaga 120951


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,638,606
Number of Sequences: 3902068
Number of extensions: 2638606
Number of successful extensions: 45136
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45112
Number of HSP's gapped (non-prelim): 24
length of query: 381
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 359
effective length of database: 17,147,199,772
effective search space: 6155844718148
effective search space used: 6155844718148
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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