ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd21h01 |
|---|---|
| Clone Library Name | barley_pub |
>R1A4_SOLDE (Q6L439) Putative late blight resistance protein homolog R1A-4| Length = 1096 Score = 36.2 bits (82), Expect = 0.082 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 6/47 (12%) Frame = -2 Query: 304 VLTELKI------FVGNCTKQRCWYRCATFHGYQMFPPSHLSVIVWL 182 VL ELK+ FV N + YRC TF+ + + SH++++VWL Sbjct: 108 VLKELKLLRFFVCFVSNKCSIQPQYRCTTFYTHALIEASHIAMVVWL 154
>EXT1B_BRARE (Q5IGR7) Exostosin-1b (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase 1b) (Multiple exostoses protein 1 homolog b) Length = 741 Score = 31.2 bits (69), Expect = 2.6 Identities = 14/43 (32%), Positives = 27/43 (62%) Frame = +2 Query: 26 YFFDTDCQREIFTAKTSGNYMMGLVTESVHWQFYIILYTT*LP 154 +F+D + +R +T+K + +Y M L +++ ++Y LYT LP Sbjct: 592 HFWDNNKERWGYTSKWTNDYSMVLTGAAIYHRYYHFLYTHFLP 634
>R1B19_SOLDE (Q6L406) Putative late blight resistance protein homolog R1B-19| Length = 1582 Score = 30.8 bits (68), Expect = 3.5 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 7/48 (14%) Frame = -2 Query: 304 VLTELKI------FVGN-CTKQRCWYRCATFHGYQMFPPSHLSVIVWL 182 VL ELK+ FV N CT+ + Y+ TF+ + + SH++++VWL Sbjct: 183 VLKELKLLRFFVCFVSNKCTEPQ--YQYTTFYTHALIEASHIAMVVWL 228
>VE1_HPV03 (P36719) Replication protein E1 (EC 3.6.1.-) (ATP-dependent| helicase E1) Length = 659 Score = 30.8 bits (68), Expect = 3.5 Identities = 20/73 (27%), Positives = 29/73 (39%) Frame = -2 Query: 451 FLQSLTEYSITRFWSPGDTFSLDVCSQLF*FCIRVECRRSSEGIE*WTLVLTELKIFVGN 272 FLQ + + S F+ P DT C L F V ++ W L E KI + + Sbjct: 473 FLQGIPKKSCIVFYGPADTGKSYFCMSLLKFLGGVVISYANSSSHFWLQPLAEAKIGLLD 532 Query: 271 CTKQRCWYRCATF 233 +CW T+ Sbjct: 533 DATSQCWCYIDTY 545
>NTP1_CFEPV (O91729) Nucleoside triphosphatase I (EC 3.6.1.15) (Nucleoside| triphosphate phosphohydrolase I) (NPH I) Length = 647 Score = 30.4 bits (67), Expect = 4.5 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%) Frame = -1 Query: 506 IQEVLFQIINYANEKKDHIP-PISDRIFNHEILVPR*HLFLGRVFTALLILYS 351 + ++ + INYA +K H+P I++ I N EI++ F R+F L L S Sbjct: 4 LDSIVGKHINYALDKTQHLPNKINNSITNTEIILQDYQYFASRIFIGLKNLNS 56
>EXT1_CRIGR (Q9JK82) Exostosin-1 (EC 2.4.1.224) (EC 2.4.1.225) (Heparan sulfate| copolymerase) (Multiple exostoses protein 1 homolog) Length = 746 Score = 30.4 bits (67), Expect = 4.5 Identities = 14/43 (32%), Positives = 26/43 (60%) Frame = +2 Query: 26 YFFDTDCQREIFTAKTSGNYMMGLVTESVHWQFYIILYTT*LP 154 +F+D +R +T+K + +Y M L +++ ++Y LYT LP Sbjct: 597 HFWDNSKERWGYTSKWTNDYSMVLTGAAIYHKYYHYLYTHYLP 639
>VE1_HPV29 (P50764) Replication protein E1 (EC 3.6.1.-) (ATP-dependent| helicase E1) Length = 660 Score = 30.0 bits (66), Expect = 5.9 Identities = 19/74 (25%), Positives = 31/74 (41%) Frame = -2 Query: 454 IFLQSLTEYSITRFWSPGDTFSLDVCSQLF*FCIRVECRRSSEGIE*WTLVLTELKIFVG 275 +FLQ + + S F+ P DT C L F V ++ W L+E K+ + Sbjct: 473 LFLQGIPKKSCLVFYGPADTGKSYFCMSLLKFMGGVVISYANSHSHFWLQPLSEAKMGLL 532 Query: 274 NCTKQRCWYRCATF 233 + +CW T+ Sbjct: 533 DDATSQCWSYVDTY 546
>NTP1_AMEPV (P29814) Nucleoside triphosphatase I (EC 3.6.1.15) (Nucleoside| triphosphate phosphohydrolase I) (NPH I) Length = 648 Score = 29.6 bits (65), Expect = 7.7 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = -1 Query: 506 IQEVLFQIINYANEKKDHIP-PISDRIFNHEILVPR*HLFLGRVFTALLILYS 351 + ++ + INYA +K H+P I + I N EI + F+ R+F L L S Sbjct: 4 LDSIVGKHINYALDKTQHLPNKIMNNITNTEITLQDYQYFVSRIFIGLKNLNS 56
>VE1_HPV28 (P50763) Replication protein E1 (EC 3.6.1.-) (ATP-dependent| helicase E1) Length = 662 Score = 29.6 bits (65), Expect = 7.7 Identities = 19/73 (26%), Positives = 29/73 (39%) Frame = -2 Query: 451 FLQSLTEYSITRFWSPGDTFSLDVCSQLF*FCIRVECRRSSEGIE*WTLVLTELKIFVGN 272 FLQ + + S F+ P DT C L F V ++ W L + KI + + Sbjct: 476 FLQGIPKKSCLVFYGPADTGKSYFCMSLLRFLGGVVISYANSNSHFWLQPLADAKIGLLD 535 Query: 271 CTKQRCWYRCATF 233 +CW T+ Sbjct: 536 DATSQCWCYIDTY 548
>R1B12_SOLDE (Q6L3Z4) Putative late blight resistance protein homolog R1B-12| Length = 1296 Score = 29.6 bits (65), Expect = 7.7 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 7/48 (14%) Frame = -2 Query: 304 VLTELKI------FVGN-CTKQRCWYRCATFHGYQMFPPSHLSVIVWL 182 VL ELK+ FV N C + + YR TF+ + + SH++++VWL Sbjct: 192 VLKELKLLRFFVCFVSNKCIEPQ--YRRTTFYTHALIEASHITMVVWL 237
>EXT1A_BRARE (Q5IGR8) Exostosin-1a (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase 1a) (Multiple exostoses protein 1 homolog a) Length = 730 Score = 29.6 bits (65), Expect = 7.7 Identities = 14/43 (32%), Positives = 27/43 (62%) Frame = +2 Query: 26 YFFDTDCQREIFTAKTSGNYMMGLVTESVHWQFYIILYTT*LP 154 +F+D++ +R +T+K + +Y M L + + ++Y LYT LP Sbjct: 581 HFWDSNKERWGYTSKWTNDYSMVLTGAAFYHRYYNYLYTHYLP 623 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,348,861 Number of Sequences: 219361 Number of extensions: 1809689 Number of successful extensions: 4931 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4789 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4930 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
